jgi.p|Nanoce1779_2|598482, mRNA_7369 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598482
Unique NamemRNA_7369
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length776
Alignment locationscaffold_19:343605..344839 +

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Properties
Property NameValue
TranscriptId598568
TrackFilteredModels2
ProteinId598482
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:343605..344839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598482gene_7369Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598482mRNA_7369-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7369CDS_7369Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7369 ID=mRNA_7369|Name=jgi.p|Nanoce1779_2|598482|organism=Nannochloropsis oceanica|type=mRNA|length=776bp
ACAGGCTTCCATCGCACCATCGCACCACTGCACCAACGTTTTCCTTCGTA
CTAAGAGCATAATGGGACGTTTGTCAGACAATGGACCCGCGACGATCGAT
GATCTTGCCCGCCAGCTCAAAATAAAGGTCGGGGTAGCCAAACGTCTTAC
CAAAGAGGTTGCCTCCTACGAAAATGAAGCCGTAGCTCAAGAACAAAAGA
TTGCGGATATGCGTGAACGAGGTCAAGATATCTATGACATTAAGAAGCAA
GAAGAAGTTCTACAGGAGTCATACATGATGATTCCTGATAGCAAGGCTAG
ACTGCAGGCAGCAGTGGAGGACTTGGAGGCCTTCGTGACGGAGCACCAGG
AGGTGAAGGGGTTGCAGGAGTCAGACATCTTGGCGGAGGCCACCGCGCTC
GTCAACCAGGCCACGACAGCTGCCACTGCCACCACCACTGGCATTTAAAC
AATAAGAAGAGGTAAGAGAAGCTGCCTAGAATACCAGCAATCGAGTAAAG
GGAGAACCCACGAGAGGAAGACAGGGACCAACGGCGGCAACCACCACCGG
CAGCTAACAGAAAGAGATGGCAGGAGAAGGCAACGGAGGGAAAAGATGAC
AACATGATGAAGAAACCATAAGGGTGTCTTTACACAGAGGCAAGGCGACG
AAAAGCATCACCATAACAATAAGATCAATGGTAGAAAGGGGGGGGGTAAT
ACAAGCAAATCAACGGGACAGGAGAGGGAAGACAGAAAACAAGGGAATCA
CCCAAAACGAATGGCGGAGCTGTGAC
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protein sequence of jgi.p|Nanoce1779_2|598482

>mRNA_7369-protein ID=mRNA_7369-protein|Name=jgi.p|Nanoce1779_2|598482|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MGRLSDNGPATIDDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADM
RERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVTEHQEVKG
LQESDILAEATALVNQATTAATATTTGI*
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mRNA from alignment at scaffold_19:343605..344839+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7369 ID=mRNA_7369|Name=jgi.p|Nanoce1779_2|598482|organism=Nannochloropsis oceanica|type=mRNA|length=1235bp|location=Sequence derived from alignment at scaffold_19:343605..344839+ (Nannochloropsis oceanica)
ACAGGCTTCCATCGCACCATCGCACCACTGCACCAACGTTTTCCTTCGTA
CTAAGAGCATAATGGGACGTTTGTCAGACAATGGACCCGCGACGATCGAT
GATCTTGCCCGCCAGCTCAAAATAAAGGTCGGGGTAGCCAAACGGTGGGT
CGACTCGGCAAAAAGTGAAAGCGTGTGGGAGAGGGATGAACAGTGATAAT
GTTGAGCGGCATCTTGTTTGTACAAGGCTTTCCAACTGCCTATGTTCGTT
GTAACCTTTTGAGGCAGAGAGTGAATGCCATAGCAGGAGAAGTCTCACCC
TCCCTCCCTCCCCCCTCCCCTAGTCTTACCAAAGAGGTTGCCTCCTACGA
AAATGAAGCCGTAGCTCAAGAACAAAAGATTGCGGATATGCGTGAACGAG
GTCAAGATATCTATGACATTAAGAAGCAAGAAGAAGTTCTACAGGAGTCA
TACATGATGATTCCTGATAGCAAGGCTAGACTGCAGGCAGCAGTGGAGGA
CTTGGAGGCCTTCGTGGTAAGGGAGGAAAGGAGGGAGGAAGGGAGTGATG
TAGAAACGATCACATACTGTCGCCATTTGTAGAAAAACATCAAGATGCTG
ATATTCATTTCTCTTTCCTCGTCAACAAAATTTGTCTCCCCCCGTCTATC
TTCTGTTGCATATCTGCAGGCGGAGAAGCGACATGGAAGGGAGTGGAAAC
GTCCGTGGGCATTTCAATTGAAACATTTAATTGACATGCTCCAGCCTGTT
CACGTCTTTCTATCCATATTTCCTGTTTCCTTTCTCTTTCTTGCAGACGG
AGCACCAGGAGGTGAAGGGGTTGCAGGAGTCAGACATCTTGGCGGAGGCC
ACCGCGCTCGTCAACCAGGCCACGACAGCTGCCACTGCCACCACCACTGG
CATTTAAACAATAAGAAGAGGTAAGAGAAGCTGCCTAGAATACCAGCAAT
CGAGTAAAGGGAGAACCCACGAGAGGAAGACAGGGACCAACGGCGGCAAC
CACCACCGGCAGCTAACAGAAAGAGATGGCAGGAGAAGGCAACGGAGGGA
AAAGATGACAACATGATGAAGAAACCATAAGGGTGTCTTTACACAGAGGC
AAGGCGACGAAAAGCATCACCATAACAATAAGATCAATGGTAGAAAGGGG
GGGGGTAATACAAGCAAATCAACGGGACAGGAGAGGGAAGACAGAAAACA
AGGGAATCACCCAAAACGAATGGCGGAGCTGTGAC
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Coding sequence (CDS) from alignment at scaffold_19:343605..344839+

>mRNA_7369 ID=mRNA_7369|Name=jgi.p|Nanoce1779_2|598482|organism=Nannochloropsis oceanica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_19:343605..344839+ (Nannochloropsis oceanica)
ATGGGACGTTTGTCAGACAATGGACCCGCGACGATCGATGATCTTGCCCG
CCAGCTCAAAATAAAGGTCGGGGTAGCCAAACGTCTTACCAAAGAGGTTG
CCTCCTACGAAAATGAAGCCGTAGCTCAAGAACAAAAGATTGCGGATATG
CGTGAACGAGGTCAAGATATCTATGACATTAAGAAGCAAGAAGAAGTTCT
ACAGGAGTCATACATGATGATTCCTGATAGCAAGGCTAGACTGCAGGCAG
CAGTGGAGGACTTGGAGGCCTTCGTGACGGAGCACCAGGAGGTGAAGGGG
TTGCAGGAGTCAGACATCTTGGCGGAGGCCACCGCGCTCGTCAACCAGGC
CACGACAGCTGCCACTGCCACCACCACTGGCATTTAAATGGGACGTTTGT
CAGACAATGGACCCGCGACGATCGATGATCTTGCCCGCCAGCTCAAAATA
AAGGTCGGGGTAGCCAAACGTCTTACCAAAGAGGTTGCCTCCTACGAAAA
TGAAGCCGTAGCTCAAGAACAAAAGATTGCGGATATGCGTGAACGAGGTC
AAGATATCTATGACATTAAGAAGCAAGAAGAAGTTCTACAGGAGTCATAC
ATGATGATTCCTGATAGCAAGGCTAGACTGCAGGCAGCAGTGGAGGACTT
GGAGGCCTTCGTGACGGAGCACCAGGAGGTGAAGGGGTTGCAGGAGTCAG
ACATCTTGGCGGAGGCCACCGCGCTCGTCAACCAGGCCACGACAGCTGCC
ACTGCCACCACCACTGGCATTTAAATGGGACGTTTGTCAGACAATGGACC
CGCGACGATCGATGATCTTGCCCGCCAGCTCAAAATAAAGGTCGGGGTAG
CCAAACGTCTTACCAAAGAGGTTGCCTCCTACGAAAATGAAGCCGTAGCT
CAAGAACAAAAGATTGCGGATATGCGTGAACGAGGTCAAGATATCTATGA
CATTAAGAAGCAAGAAGAAGTTCTACAGGAGTCATACATGATGATTCCTG
ATAGCAAGGCTAGACTGCAGGCAGCAGTGGAGGACTTGGAGGCCTTCGTG
ACGGAGCACCAGGAGGTGAAGGGGTTGCAGGAGTCAGACATCTTGGCGGA
GGCCACCGCGCTCGTCAACCAGGCCACGACAGCTGCCACTGCCACCACCA
CTGGCATTTAA
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Synonyms
Publications