jgi.p|Nanoce1779_2|652298, mRNA_7368 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|652298
Unique NamemRNA_7368
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1290
Alignment locationscaffold_19:341427..342964 -

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Properties
Property NameValue
TranscriptId652384
TrackFilteredModels2
ProteinId652298
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:341427..342964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|652298gene_7368Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|652298mRNA_7368-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7368CDS_7368Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7368 ID=mRNA_7368|Name=jgi.p|Nanoce1779_2|652298|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp
CAGCTCCATAGCTTCTTCCACGACGGTTTTCTCATCAAACATGGCCTCTT
TGCCCCCGCCGAGCTTCGACCTGTCATGAACGACATCGAAAAACAAGTCG
ACTCCCTAGCGTCCACCCTTCTCTCTGCCGGGCTGATCACCGACTCTGCC
CCTTCCCTCGGATTCTACCAGCGCATGGCAGCTCTCGAGAAGCAATTTCC
AGGGGCCAGCGTCCTCTTGCACAAGACACCCGCCCTTCCTCCATCCTTCC
AATCGCTCTGGACTGACAATCGCTTGCTTGATATCGCGCAGCAATTGTTG
GGGGGTCGGGATATAGATGTGGCTGGTCACCCTGTCTGGAATTTACGCGT
TAAAGTGCCACAAACAGACTCGTCAGTCGTGCCTTGGCATCAAGACGCGG
CGTACCTCGACCCCGAATCCGCACATACTTTGCAGGTCACGGCATGGATC
CCTTTTATCAATGCCACAGCTCGTAATGGCTGTTTGCAAGTGATCAGAGG
CGCGCACCGCACGGGGAAAACAGCCAAGCATACATGCTGTGCGGGGGGTA
CGTGGTATGTGCAGATGGACATGGACGATGCGTCCTCGCGGCTGGGAGTT
AATTGCCACGACGAAGGAGAATGGGAGACATGTGAAGTACCTTTAGGGTC
GGTACTTTTTCTCAGCAATTTGATCCCTCATCGTTCGCTTGCAAACAGTT
CTCCTGACATTCGATGGAGCGTGGACTTACGATGGCAGGACGCAAACCAA
CCCACCGGGTTCTGGGGCATTAAAGACCATGTCCTGATGAGGAGGGGATC
GAGGGAGGGAGGGAAGGAGAGCGAGGAGGAGGAGAACTTCATGGTGCGTT
GGGATGAGTTTCTGGCGGTGGACCGTGGGAAAGCTCAGAGTAAGGCAGCC
GCGAATGCAACACATGTACAGGAGGACGAGGACGGAAAGGAGGGTGGGAA
GGAGGAGGTTTCAGCAGCAGTGGCGGCCGGGGCGGATGAGTTAAAGCCAG
TGATTGCAGGTCCATGGATGCTGCGATGGGAGATTACGAATCACAATGCG
CACACTGCGGAGTTGGAAGAGGTGGGGGCGGAGGGAGGAGAGGACGCAGT
GCCGGCATCGTGGCATAAGGCGTGAGCGCGTGAGGAAAAAACGCGGAGGT
TGTGATTCTAGGGAGGGTGAGGGGTTTTCAAGGAAGAAATAAAGGAGTGA
GGGGGGACAAATCCTCCTCCGTGTGTAATTGTATGGACACGAAGTAGGAA
ATAGGTAAAATCAAGGGTACAGGTGTAAGAAAGACGGGCC
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protein sequence of jgi.p|Nanoce1779_2|652298

>mRNA_7368-protein ID=mRNA_7368-protein|Name=jgi.p|Nanoce1779_2|652298|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MNDIEKQVDSLASTLLSAGLITDSAPSLGFYQRMAALEKQFPGASVLLHK
TPALPPSFQSLWTDNRLLDIAQQLLGGRDIDVAGHPVWNLRVKVPQTDSS
VVPWHQDAAYLDPESAHTLQVTAWIPFINATARNGCLQVIRGAHRTGKTA
KHTCCAGGTWYVQMDMDDASSRLGVNCHDEGEWETCEVPLGSVLFLSNLI
PHRSLANSSPDIRWSVDLRWQDANQPTGFWGIKDHVLMRRGSREGGKESE
EEENFMVRWDEFLAVDRGKAQSKAAANATHVQEDEDGKEGGKEEVSAAVA
AGADELKPVIAGPWMLRWEITNHNAHTAELEEVGAEGGEDAVPASWHKA*
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mRNA from alignment at scaffold_19:341427..342964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7368 ID=mRNA_7368|Name=jgi.p|Nanoce1779_2|652298|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp|location=Sequence derived from alignment at scaffold_19:341427..342964- (Nannochloropsis oceanica)
CAGCTCCATAGCTTCTTCCACGACGGTTTTCTCATCAAACATGGCCTCTT
TGCCCCCGCCGAGCTTCGACCTGTCATGAACGACATCGAAAAACAAGTCG
ACTCCCTAGCGTCCACCCTTCTCTCTGCCGGGCTGATCACCGACTCTGCC
CCTTCCCTCGGATTCTACCAGCGCATGGCAGCTCTCGAGAAGCAATTTCC
AGGGGCCAGCGTCCTCTTGCACAAGACACCCGCCCTTCCTCCATCCTTCC
AATCGCTCTGGACTGACAATCGCTTGCTTGATATCGCGCAGCAATTGTTG
GGGGGTCGGGATATAGATGTGGCTGGTCACCCTGTCTGGAATTTACGCGT
TAAAGTGCCACAAACAGACTCGTCAGTCGTGCCTTGGCATCAAGACGCGG
CGTACCTCGACCCCGAATCCGCACATACTTTGCAGGTAGGCTAGTGCTCC
TTCCTTTCCTTCCGCCCCTCCTACCTTCTATTATTTCCCCTTTTCTCAGT
CGTGTCGATGTCCTCCCTCCCTCCCTCTCTCCTTCCCTCTCTCCCTCCCT
CCCTCTCTGCATAGGTCACGGCATGGATCCCTTTTATCAATGCCACAGCT
CGTAATGGCTGTTTGCAAGTGATCAGAGGCGCGCACCGCACGGGGAAAAC
AGCCAAGCATACATGCTGTGCGGGGGGTACGTGGTATGTGCAGATGGACA
TGGACGATGCGTCCTCGCGGCTGGGAGTTAATTGCCACGACGAAGGAGAA
TGGGAGACATGTGAAGTACCTTTAGGGTCGGTACTTTTTCTCAGGTACAG
CTTATTTTTTCGATTGTTTATTTTCTCTTCTCCCCTGCAGCCAGCAAGCT
TACACTTCCTCCCTTTCCTTCCTCCCTCCCACCCCCCCATTCCTCCCTCT
CTCCCTCCTTCAGCAATTTGATCCCTCATCGTTCGCTTGCAAACAGTTCT
CCTGACATTCGATGGAGCGTGGACTTACGATGGCAGGACGCAAACCAACC
CACCGGGTTCTGGGGCATTAAAGACCATGTCCTGATGAGGAGGGGATCGA
GGGAGGGAGGGAAGGAGAGCGAGGAGGAGGAGAACTTCATGGTGCGTTGG
GATGAGTTTCTGGCGGTGGACCGTGGGAAAGCTCAGAGTAAGGCAGCCGC
GAATGCAACACATGTACAGGAGGACGAGGACGGAAAGGAGGGTGGGAAGG
AGGAGGTTTCAGCAGCAGTGGCGGCCGGGGCGGATGAGTTAAAGCCAGTG
ATTGCAGGTCCATGGATGCTGCGATGGGAGATTACGAATCACAATGCGCA
CACTGCGGAGTTGGAAGAGGTGGGGGCGGAGGGAGGAGAGGACGCAGTGC
CGGCATCGTGGCATAAGGCGTGAGCGCGTGAGGAAAAAACGCGGAGGTTG
TGATTCTAGGGAGGGTGAGGGGTTTTCAAGGAAGAAATAAAGGAGTGAGG
GGGGACAAATCCTCCTCCGTGTGTAATTGTATGGACACGAAGTAGGAAAT
AGGTAAAATCAAGGGTACAGGTGTAAGAAAGACGGGCC
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Coding sequence (CDS) from alignment at scaffold_19:341427..342964-

>mRNA_7368 ID=mRNA_7368|Name=jgi.p|Nanoce1779_2|652298|organism=Nannochloropsis oceanica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_19:341427..342964- (Nannochloropsis oceanica)
CAATTTGATCCCTCATCGTTCGCTTGCAAACAGTTCTCCTGACATTCGAT
GGAGCGTGGACTTACGATGGCAGGACGCAAACCAACCCACCGGGTTCTGG
GGCATTAAAGACCATGTCCTGATGAGGAGGGGATCGAGGGAGGGAGGGAA
GGAGAGCGAGGAGGAGGAGAACTTCATGGTGCGTTGGGATGAGTTTCTGG
CGGTGGACCGTGGGAAAGCTCAGAGTAAGGCAGCCGCGAATGCAACACAT
GTACAGGAGGACGAGGACGGAAAGGAGGGTGGGAAGGAGGAGGTTTCAGC
AGCAGTGGCGGCCGGGGCGGATGAGTTAAAGCCAGTGATTGCAGGTCCAT
GGATGCTGCGATGGGAGATTACGAATCACAATGCGCACACTGCGGAGTTG
GAAGAGGTGGGGGCGGAGGGAGGAGAGGACGCAGTGCCGGCATCGTGGCA
TAAGGCGTGAGTCACGGCATGGATCCCTTTTATCAATGCCACAGCTCGTA
ATGGCTGTTTGCAAGTGATCAGAGGCGCGCACCGCACGGGGAAAACAGCC
AAGCATACATGCTGTGCGGGGGGTACGTGGTATGTGCAGATGGACATGGA
CGATGCGTCCTCGCGGCTGGGAGTTAATTGCCACGACGAAGGAGAATGGG
AGACATGTGAAGTACCTTTAGGGTCGGTACTTTTTCTCAGATGAACGACA
TCGAAAAACAAGTCGACTCCCTAGCGTCCACCCTTCTCTCTGCCGGGCTG
ATCACCGACTCTGCCCCTTCCCTCGGATTCTACCAGCGCATGGCAGCTCT
CGAGAAGCAATTTCCAGGGGCCAGCGTCCTCTTGCACAAGACACCCGCCC
TTCCTCCATCCTTCCAATCGCTCTGGACTGACAATCGCTTGCTTGATATC
GCGCAGCAATTGTTGGGGGGTCGGGATATAGATGTGGCTGGTCACCCTGT
CTGGAATTTACGCGTTAAAGTGCCACAAACAGACTCGTCAGTCGTGCCTT
GGCATCAAGACGCGGCGTACCTCGACCCCGAATCCGCACATACTTTGCAG
CAATTTGATCCCTCATCGTTCGCTTGCAAACAGTTCTCCTGACATTCGAT
GGAGCGTGGACTTACGATGGCAGGACGCAAACCAACCCACCGGGTTCTGG
GGCATTAAAGACCATGTCCTGATGAGGAGGGGATCGAGGGAGGGAGGGAA
GGAGAGCGAGGAGGAGGAGAACTTCATGGTGCGTTGGGATGAGTTTCTGG
CGGTGGACCGTGGGAAAGCTCAGAGTAAGGCAGCCGCGAATGCAACACAT
GTACAGGAGGACGAGGACGGAAAGGAGGGTGGGAAGGAGGAGGTTTCAGC
AGCAGTGGCGGCCGGGGCGGATGAGTTAAAGCCAGTGATTGCAGGTCCAT
GGATGCTGCGATGGGAGATTACGAATCACAATGCGCACACTGCGGAGTTG
GAAGAGGTGGGGGCGGAGGGAGGAGAGGACGCAGTGCCGGCATCGTGGCA
TAAGGCGTGAGTCACGGCATGGATCCCTTTTATCAATGCCACAGCTCGTA
ATGGCTGTTTGCAAGTGATCAGAGGCGCGCACCGCACGGGGAAAACAGCC
AAGCATACATGCTGTGCGGGGGGTACGTGGTATGTGCAGATGGACATGGA
CGATGCGTCCTCGCGGCTGGGAGTTAATTGCCACGACGAAGGAGAATGGG
AGACATGTGAAGTACCTTTAGGGTCGGTACTTTTTCTCAGATGAACGACA
TCGAAAAACAAGTCGACTCCCTAGCGTCCACCCTTCTCTCTGCCGGGCTG
ATCACCGACTCTGCCCCTTCCCTCGGATTCTACCAGCGCATGGCAGCTCT
CGAGAAGCAATTTCCAGGGGCCAGCGTCCTCTTGCACAAGACACCCGCCC
TTCCTCCATCCTTCCAATCGCTCTGGACTGACAATCGCTTGCTTGATATC
GCGCAGCAATTGTTGGGGGGTCGGGATATAGATGTGGCTGGTCACCCTGT
CTGGAATTTACGCGTTAAAGTGCCACAAACAGACTCGTCAGTCGTGCCTT
GGCATCAAGACGCGGCGTACCTCGACCCCGAATCCGCACATACTTTGCAG
CAATTTGATCCCTCATCGTTCGCTTGCAAACAGTTCTCCTGACATTCGAT
GGAGCGTGGACTTACGATGGCAGGACGCAAACCAACCCACCGGGTTCTGG
GGCATTAAAGACCATGTCCTGATGAGGAGGGGATCGAGGGAGGGAGGGAA
GGAGAGCGAGGAGGAGGAGAACTTCATGGTGCGTTGGGATGAGTTTCTGG
CGGTGGACCGTGGGAAAGCTCAGAGTAAGGCAGCCGCGAATGCAACACAT
GTACAGGAGGACGAGGACGGAAAGGAGGGTGGGAAGGAGGAGGTTTCAGC
AGCAGTGGCGGCCGGGGCGGATGAGTTAAAGCCAGTGATTGCAGGTCCAT
GGATGCTGCGATGGGAGATTACGAATCACAATGCGCACACTGCGGAGTTG
GAAGAGGTGGGGGCGGAGGGAGGAGAGGACGCAGTGCCGGCATCGTGGCA
TAAGGCGTGAGTCACGGCATGGATCCCTTTTATCAATGCCACAGCTCGTA
ATGGCTGTTTGCAAGTGATCAGAGGCGCGCACCGCACGGGGAAAACAGCC
AAGCATACATGCTGTGCGGGGGGTACGTGGTATGTGCAGATGGACATGGA
CGATGCGTCCTCGCGGCTGGGAGTTAATTGCCACGACGAAGGAGAATGGG
AGACATGTGAAGTACCTTTAGGGTCGGTACTTTTTCTCAGATGAACGACA
TCGAAAAACAAGTCGACTCCCTAGCGTCCACCCTTCTCTCTGCCGGGCTG
ATCACCGACTCTGCCCCTTCCCTCGGATTCTACCAGCGCATGGCAGCTCT
CGAGAAGCAATTTCCAGGGGCCAGCGTCCTCTTGCACAAGACACCCGCCC
TTCCTCCATCCTTCCAATCGCTCTGGACTGACAATCGCTTGCTTGATATC
GCGCAGCAATTGTTGGGGGGTCGGGATATAGATGTGGCTGGTCACCCTGT
CTGGAATTTACGCGTTAAAGTGCCACAAACAGACTCGTCAGTCGTGCCTT
GGCATCAAGACGCGGCGTACCTCGACCCCGAATCCGCACATACTTTGCAG
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Synonyms
Publications