jgi.p|Nanoce1779_2|598477, mRNA_7367 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598477
Unique NamemRNA_7367
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1185
Alignment locationscaffold_19:340205..341389 +

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Properties
Property NameValue
TranscriptId598563
TrackFilteredModels2
ProteinId598477
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:340205..341389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598477gene_7367Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598477mRNA_7367-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7367CDS_7367Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7367 ID=mRNA_7367|Name=jgi.p|Nanoce1779_2|598477|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
ACAGGAAAAATATGTTAAAGGTCTTCCTCTTCGGGCTCCTCTTAGCCCTG
GCGCCAATAATTCTGAATTTTGCGACCCGCCGGGCCTATCCAATCCCGCC
CGCAGGCGGCAGCGCCATCGTCATCTCCGGTGCTTCCACAGGCATCGGTT
ACGACGCTGCTGTCCACTTAGCCGACGACTTTGTAGTTTTTGCTGGCGTG
CGGAAAGAAAAAGACGCCGAGGCTCTCCGGGCATTGGGCAAGCCGACTCT
CGTGCCGGTGCTCCTGGACGTGGCCAAGCAGGAATCCGTAGACGAGGCGT
ACGAGAAAATCACGGCCGACGTCAAGAAACGCGGTATCCCCATCTGGGCC
ATTGTCAACAATGCAGGGATTATGACGGGCTCGACGGTAGAATTCCATGA
CGTGGCCAAGATGAAAGAGATCTACGAGGTGAACGTGTGGGGCGTCTTGA
GGCTTACGCAGAAGTTTCTACCATTGATTCGAGCGCAATCGGGACGCATT
ATCCAAATCTCTTCCATAGTCGGCTTCCTCACAATCCCGCGCGCCTCTGC
GTATAGCTCCAGTAAACATGCCTTGGAATCGTTGAGCGATGCCCTGCGAA
TGGAGCTCGATAAATTCAATGTCTCTGTCACTGTGGTCCAACCAGGTGCC
GTAAAGAGCGCCATATTTGACAAGAGCAAGGAGGCGACCAAAACTAAGTT
AGCCGAAGACCCTCGCGAGCTCGAAGTATACGGGCTTCCGGCTAATAGGG
AAAATAATTCGATTGTCGAGGCGGCTGCTACGCCTGAGTGTACCACGAGG
GCGATCCGACATGCGCTCATGGCCGAGTACCCCAAGACGCGCGAGGTGGT
CGCGAATATCAATGGAGTCCCAGCGATAGTGTCGTACTATCTGAAGCTGA
CATTGCCTGATCGATTATTGGATCAGTTATTATTATCAGCGTTCACGTAA
AGGACGGAGGTTGGTGAGAGGGAGGGAGGGAAGAGTGAGGGGCTGTGTGA
AAGTGTGGCAAACGTCGTGTGTGAGAGTGTGTGAGAGAGAGTGTGCGTGT
GTGTCAGAGAGAGCGTGAGAGAGAGAGTGTGTGTGAGGGAGAGCTATTGG
CGAATAGAAACTATGTAGCAAGGCATACAAATTTATACAGCCAAATCACC
GGACCCAAACGAAAGAAATACAGAAGACCTTTGAA
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protein sequence of jgi.p|Nanoce1779_2|598477

>mRNA_7367-protein ID=mRNA_7367-protein|Name=jgi.p|Nanoce1779_2|598477|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MLKVFLFGLLLALAPIILNFATRRAYPIPPAGGSAIVISGASTGIGYDAA
VHLADDFVVFAGVRKEKDAEALRALGKPTLVPVLLDVAKQESVDEAYEKI
TADVKKRGIPIWAIVNNAGIMTGSTVEFHDVAKMKEIYEVNVWGVLRLTQ
KFLPLIRAQSGRIIQISSIVGFLTIPRASAYSSSKHALESLSDALRMELD
KFNVSVTVVQPGAVKSAIFDKSKEATKTKLAEDPRELEVYGLPANRENNS
IVEAAATPECTTRAIRHALMAEYPKTREVVANINGVPAIVSYYLKLTLPD
RLLDQLLLSAFT*
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mRNA from alignment at scaffold_19:340205..341389+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7367 ID=mRNA_7367|Name=jgi.p|Nanoce1779_2|598477|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp|location=Sequence derived from alignment at scaffold_19:340205..341389+ (Nannochloropsis oceanica)
ACAGGAAAAATATGTTAAAGGTCTTCCTCTTCGGGCTCCTCTTAGCCCTG
GCGCCAATAATTCTGAATTTTGCGACCCGCCGGGCCTATCCAATCCCGCC
CGCAGGCGGCAGCGCCATCGTCATCTCCGGTGCTTCCACAGGCATCGGTT
ACGACGCTGCTGTCCACTTAGCCGACGACTTTGTAGTTTTTGCTGGCGTG
CGGAAAGAAAAAGACGCCGAGGCTCTCCGGGCATTGGGCAAGCCGACTCT
CGTGCCGGTGCTCCTGGACGTGGCCAAGCAGGAATCCGTAGACGAGGCGT
ACGAGAAAATCACGGCCGACGTCAAGAAACGCGGTATCCCCATCTGGGCC
ATTGTCAACAATGCAGGGATTATGACGGGCTCGACGGTAGAATTCCATGA
CGTGGCCAAGATGAAAGAGATCTACGAGGTGAACGTGTGGGGCGTCTTGA
GGCTTACGCAGAAGTTTCTACCATTGATTCGAGCGCAATCGGGACGCATT
ATCCAAATCTCTTCCATAGTCGGCTTCCTCACAATCCCGCGCGCCTCTGC
GTATAGCTCCAGTAAACATGCCTTGGAATCGTTGAGCGATGCCCTGCGAA
TGGAGCTCGATAAATTCAATGTCTCTGTCACTGTGGTCCAACCAGGTGCC
GTAAAGAGCGCCATATTTGACAAGAGCAAGGAGGCGACCAAAACTAAGTT
AGCCGAAGACCCTCGCGAGCTCGAAGTATACGGGCTTCCGGCTAATAGGG
AAAATAATTCGATTGTCGAGGCGGCTGCTACGCCTGAGTGTACCACGAGG
GCGATCCGACATGCGCTCATGGCCGAGTACCCCAAGACGCGCGAGGTGGT
CGCGAATATCAATGGAGTCCCAGCGATAGTGTCGTACTATCTGAAGCTGA
CATTGCCTGATCGATTATTGGATCAGTTATTATTATCAGCGTTCACGTAA
AGGACGGAGGTTGGTGAGAGGGAGGGAGGGAAGAGTGAGGGGCTGTGTGA
AAGTGTGGCAAACGTCGTGTGTGAGAGTGTGTGAGAGAGAGTGTGCGTGT
GTGTCAGAGAGAGCGTGAGAGAGAGAGTGTGTGTGAGGGAGAGCTATTGG
CGAATAGAAACTATGTAGCAAGGCATACAAATTTATACAGCCAAATCACC
GGACCCAAACGAAAGAAATACAGAAGACCTTTGAA
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Coding sequence (CDS) from alignment at scaffold_19:340205..341389+

>mRNA_7367 ID=mRNA_7367|Name=jgi.p|Nanoce1779_2|598477|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at scaffold_19:340205..341389+ (Nannochloropsis oceanica)
ATGTTAAAGGTCTTCCTCTTCGGGCTCCTCTTAGCCCTGGCGCCAATAAT
TCTGAATTTTGCGACCCGCCGGGCCTATCCAATCCCGCCCGCAGGCGGCA
GCGCCATCGTCATCTCCGGTGCTTCCACAGGCATCGGTTACGACGCTGCT
GTCCACTTAGCCGACGACTTTGTAGTTTTTGCTGGCGTGCGGAAAGAAAA
AGACGCCGAGGCTCTCCGGGCATTGGGCAAGCCGACTCTCGTGCCGGTGC
TCCTGGACGTGGCCAAGCAGGAATCCGTAGACGAGGCGTACGAGAAAATC
ACGGCCGACGTCAAGAAACGCGGTATCCCCATCTGGGCCATTGTCAACAA
TGCAGGGATTATGACGGGCTCGACGGTAGAATTCCATGACGTGGCCAAGA
TGAAAGAGATCTACGAGGTGAACGTGTGGGGCGTCTTGAGGCTTACGCAG
AAGTTTCTACCATTGATTCGAGCGCAATCGGGACGCATTATCCAAATCTC
TTCCATAGTCGGCTTCCTCACAATCCCGCGCGCCTCTGCGTATAGCTCCA
GTAAACATGCCTTGGAATCGTTGAGCGATGCCCTGCGAATGGAGCTCGAT
AAATTCAATGTCTCTGTCACTGTGGTCCAACCAGGTGCCGTAAAGAGCGC
CATATTTGACAAGAGCAAGGAGGCGACCAAAACTAAGTTAGCCGAAGACC
CTCGCGAGCTCGAAGTATACGGGCTTCCGGCTAATAGGGAAAATAATTCG
ATTGTCGAGGCGGCTGCTACGCCTGAGTGTACCACGAGGGCGATCCGACA
TGCGCTCATGGCCGAGTACCCCAAGACGCGCGAGGTGGTCGCGAATATCA
ATGGAGTCCCAGCGATAGTGTCGTACTATCTGAAGCTGACATTGCCTGAT
CGATTATTGGATCAGTTATTATTATCAGCGTTCACGTAA
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Synonyms
Publications