jgi.p|Nanoce1779_2|598474, mRNA_7366 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598474
Unique Name	mRNA_7366
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1221
Alignment location	scaffold_19:337239..339101 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598560
Track	FilteredModels2
ProteinId	598474

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:337239..339101 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598474	gene_7366	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598474	mRNA_7366-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7366	CDS_7366	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:337239..339101+
coding sequence from alignment at scaffold_19:337239..339101+

mRNA sequence

>mRNA_7366 ID=mRNA_7366|Name=jgi.p|Nanoce1779_2|598474|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp
ACAGGTAACCTAGCTCAAAGAAGGACTTATTTACCCCATACACGACACCA
ACGGAGGGATGCTGCGCCTGTCTCTCCTTTTGCTGGCCTCGGCCACGTTC
AGCAGTGCCTTTGTCTTCCCTGCTAGCCGGGTGGGTAGCAGAATCGTCGC
AGAGCCACTAACCAAGCTGCATGTCGTCGTCTCCGAAACCACCCGTGAAG
GGGTCCCGATGCCCCAACCCAGCATCAAGCCCGCCTCTGACAAACTCTTC
GTGTACCTGTGGATCGACCACCTGGGCAACCGTGTCTACCGTGCAACCCG
CAATATCGGGGCCTCTCCCCGAGCCATCCAGCTCTGGAACCCCCTCGCCA
CCGATGAAGAGCAGAGCTACCCCGAGACTGGCGTCTCCACCGCTCCTTCT
TTCACCAAGTACGAGATGCTGGGCGAGGAAAACCTGGATGCGTGGGTAGA
GAATGGGTTTGGTGAAATGGATGATGTGGAGGCTTCTCCCCTAGCTTATA
CCATTGAGGGCGGGGACGACGCGTCAGCTACCGCAAACGCGGCCGCGGCT
GCTACAGCTGGGGGGGAAGGAAATGAGGAAGCGGAGATGACGAGTGAGGA
GATCGAGGAATCCATCAGTGCGTACAACGAATACTACCCGCCCGCGGACT
TCAAGAGCATGGTGACGGCGATGGAGAAGAGCTGGCGGACCATCATTTTG
TCGCGAGGAAAACAAGGAGCCAAGTCCATGCGAGAATTTTACAGGGATCT
GCACAAGGCTCACCCTGAGCTGGAGCAAAAAGTCTGGATCATGGAGACGC
ACGCCACTCGCTCCCCCGTTCCCGGCGATCCGGACACGTACAACCACTGG
ATGAGCGACGAGGACATCCTGAAGATGGCCCGCGTGGCGACTGAAGGGCA
CGATGACGTGGTTGAATTTTCGGGTTTGGAATTTGGAGACTCTATGGATG
GGATTAAGGGGGAGGATTGGGTTACCATTCCGCCGCCTTTATCCTGGTTT
AAGGATGAGGCCAAGAAGTAAAGAGAGCATGGAAAGGAGAAGAAGAGAGG
AAATGAATTAGAGGGATAAAGAGAGAGAGAGAGAGAGAGAGAGCAAAATT
AGACATAGGAATGGCGAAAGAGGAGGAAGAGAATGCAGCGACGATGAGAA
GAGAGAGGAAGGCAAGAGAGCAGATAAAAGGAAGGAGAGGTATATGTGGG
GGGGGAATGAAGGAGAGAGAG

protein sequence of jgi.p|Nanoce1779_2|598474

>mRNA_7366-protein ID=mRNA_7366-protein|Name=jgi.p|Nanoce1779_2|598474|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MLRLSLLLLASATFSSAFVFPASRVGSRIVAEPLTKLHVVVSETTREGVP
MPQPSIKPASDKLFVYLWIDHLGNRVYRATRNIGASPRAIQLWNPLATDE
EQSYPETGVSTAPSFTKYEMLGEENLDAWVENGFGEMDDVEASPLAYTIE
GGDDASATANAAAAATAGGEGNEEAEMTSEEIEESISAYNEYYPPADFKS
MVTAMEKSWRTIILSRGKQGAKSMREFYRDLHKAHPELEQKVWIMETHAT
RSPVPGDPDTYNHWMSDEDILKMARVATEGHDDVVEFSGLEFGDSMDGIK
GEDWVTIPPPLSWFKDEAKK*

mRNA from alignment at scaffold_19:337239..339101+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7366 ID=mRNA_7366|Name=jgi.p|Nanoce1779_2|598474|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp|location=Sequence derived from alignment at scaffold_19:337239..339101+ (Nannochloropsis oceanica)
ACAGGTAACCTAGCTCAAAGAAGGACTTATTTACCCCATACACGACACCA
ACGGAGGGATGCTGCGCCTGTCTCTCCTTTTGCTGGCCTCGGCCACGTTC
AGCAGTGCCTTTGTCTTCCCTGCTAGCCGGGTGGGTAGCAGAATCGTCGC
AGGTACGTGCGTTATTTGATATGGCGTGCTTTTGGGGATGTATGTTTTGG
TTATGGCATGGTAATACTGTGTAAATGAGTGACTGGATGCTGGAAAATTA
TCCCTAATACCTTCTCCCTGGCGTTGCTCGCCCATCTCCACATCTCAATC
CCTCCCTCCCTCCCTCCCTCCCTCCAAATCAACACAGAGCCACTAACCAA
GCTGCATGTCGTCGTCTCCGAAACCACCCGTGAAGGGGTCCCGATGCCCC
AACCCAGCATCAAGCCCGCCTCTGACAAACTCTTCGTGTACCTGTGGATC
GACCACCTGGGCAACCGTGTCTACCGTGCAACCCGCAATATCGGGGCCTC
TCCCCGAGCCATCCAGCTCTGGAACCCCCTCGCCACCGATGAAGAGCAGG
TAAGCAAAATATATCTCTCACCTTCCCCCCGTGGCGGTGTCCCTCTTAAA
ATTCTTTTCGTGTAGTAATTGTGCCTTTCGCTCACCCTCCCTCCCCCCTC
TTTCCCTTCCTCCCCTTCTCAACAGAGCTACCCCGAGACTGGCGTCTCCA
CCGCTCCTTCTTTCACCAAGTACGAGATGCTGGGCGAGGAAAACCTGGAT
GCGTGGGTAGAGAATGGGTTTGGTGAAATGGATGATGTGGAGGCTTCTCC
CCTAGCTTATACCATTGAGGGCGGGGACGACGCGTCAGCTACCGCAAACG
CGGCCGCGGCTGCTACAGCTGGGGGGGAAGGAAATGAGGAAGCGGAGATG
ACGAGTGAGGAGATCGAGGAATCCATCAGTGCGTACAACGAATACTACCC
GCCCGCGGACTTCAAGAGCATGGTGACGGCGATGGAGAAGAGCTGGCGGA
CCATCATTTTGTCGCGAGGAAAACAAGGAGCCAAGTCCATGCGAGAATTT
TACAGGTAAGAGAGGCAGGGGATGAGGGAGTGAGGGAGAAATGAGAGGAA
AGGGTATGGCCAATATCAATTTCTTGTCTATGTACACCGCAAGGCTGTAT
TTGGTGGAATGTTCATCATCCCCTCCCTTCCTCCCTTCCTCCCTACCCCC
TTCCCCTCCTTCTAGGGATCTGCACAAGGCTCACCCTGAGCTGGAGCAAA
AAGTCTGGATCATGGAGACGCACGCCACTCGCTCCCCCGTTCCCGGCGAT
CCGGACACGTACAACCACTGGATGAGCGACGAGGACATCCTGAAGATGGC
CCGCGTGGTACGTAGCCCGCCCTCCTTCGCGTCCTCGTTTCCTCCCTCCT
CTCCGTTCATACCTCGTTTTGCCTGATATAGATGCTGGCCTCCTACATTG
ATGACAGGCCCCTTCACTCATATTTTCGTTCTCTCCCTCCTTCCCTCCTT
CCCTCCGTCCCTCCGCAGGCGACTGAAGGGCACGATGACGTGGTTGAATT
TTCGGGTTTGGAATTTGGAGACTCTATGGATGGGATTAAGGGGGAGGATT
GGGTTACCATTCCGCCGCCTTTATCCTGGTTTAAGGATGAGGCCAAGAAG
TAAAGAGAGCATGGAAAGGAGAAGAAGAGAGGAAATGAATTAGAGGGATA
AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAAATTAGACATAG
GAATGGCGAAAGAGGAGGAAGAGAATGCAGCGACGATGAGAAGAGAGAGG
AAGGCAAGAGAGCAGATAAAAGGAAGGAGAGGTATATGTGGGGGGGGAAT
GAAGGAGAGAGAG

Coding sequence (CDS) from alignment at scaffold_19:337239..339101+

>mRNA_7366 ID=mRNA_7366|Name=jgi.p|Nanoce1779_2|598474|organism=Nannochloropsis oceanica|type=CDS|length=4815bp|location=Sequence derived from alignment at scaffold_19:337239..339101+ (Nannochloropsis oceanica)
ATGCTGCGCCTGTCTCTCCTTTTGCTGGCCTCGGCCACGTTCAGCAGTGC
CTTTGTCTTCCCTGCTAGCCGGGTGGGTAGCAGAATCGTCGCAGAGCCAC
TAACCAAGCTGCATGTCGTCGTCTCCGAAACCACCCGTGAAGGGGTCCCG
ATGCCCCAACCCAGCATCAAGCCCGCCTCTGACAAACTCTTCGTGTACCT
GTGGATCGACCACCTGGGCAACCGTGTCTACCGTGCAACCCGCAATATCG
GGGCCTCTCCCCGAGCCATCCAGCTCTGGAACCCCCTCGCCACCGATGAA
GAGCAGAGCTACCCCGAGACTGGCGTCTCCACCGCTCCTTCTTTCACCAA
GTACGAGATGCTGGGCGAGGAAAACCTGGATGCGTGGGTAGAGAATGGGT
TTGGTGAAATGGATGATGTGGAGGCTTCTCCCCTAGCTTATACCATTGAG
GGCGGGGACGACGCGTCAGCTACCGCAAACGCGGCCGCGGCTGCTACAGC
TGGGGGGGAAGGAAATGAGGAAGCGGAGATGACGAGTGAGGAGATCGAGG
AATCCATCAGTGCGTACAACGAATACTACCCGCCCGCGGACTTCAAGAGC
ATGGTGACGGCGATGGAGAAGAGCTGGCGGACCATCATTTTGTCGCGAGG
AAAACAAGGAGCCAAGTCCATGCGAGAATTTTACAGGGATCTGCACAAGG
CTCACCCTGAGCTGGAGCAAAAAGTCTGGATCATGGAGACGCACGCCACT
CGCTCCCCCGTTCCCGGCGATCCGGACACGTACAACCACTGGATGAGCGA
CGAGGACATCCTGAAGATGGCCCGCGTGGCGACTGAAGGGCACGATGACG
TGGTTGAATTTTCGGGTTTGGAATTTGGAGACTCTATGGATGGGATTAAG
GGGGAGGATTGGGTTACCATTCCGCCGCCTTTATCCTGGTTTAAGGATGA
GGCCAAGAAGTAAATGCTGCGCCTGTCTCTCCTTTTGCTGGCCTCGGCCA
CGTTCAGCAGTGCCTTTGTCTTCCCTGCTAGCCGGGTGGGTAGCAGAATC
GTCGCAGAGCCACTAACCAAGCTGCATGTCGTCGTCTCCGAAACCACCCG
TGAAGGGGTCCCGATGCCCCAACCCAGCATCAAGCCCGCCTCTGACAAAC
TCTTCGTGTACCTGTGGATCGACCACCTGGGCAACCGTGTCTACCGTGCA
ACCCGCAATATCGGGGCCTCTCCCCGAGCCATCCAGCTCTGGAACCCCCT
CGCCACCGATGAAGAGCAGAGCTACCCCGAGACTGGCGTCTCCACCGCTC
CTTCTTTCACCAAGTACGAGATGCTGGGCGAGGAAAACCTGGATGCGTGG
GTAGAGAATGGGTTTGGTGAAATGGATGATGTGGAGGCTTCTCCCCTAGC
TTATACCATTGAGGGCGGGGACGACGCGTCAGCTACCGCAAACGCGGCCG
CGGCTGCTACAGCTGGGGGGGAAGGAAATGAGGAAGCGGAGATGACGAGT
GAGGAGATCGAGGAATCCATCAGTGCGTACAACGAATACTACCCGCCCGC
GGACTTCAAGAGCATGGTGACGGCGATGGAGAAGAGCTGGCGGACCATCA
TTTTGTCGCGAGGAAAACAAGGAGCCAAGTCCATGCGAGAATTTTACAGG
GATCTGCACAAGGCTCACCCTGAGCTGGAGCAAAAAGTCTGGATCATGGA
GACGCACGCCACTCGCTCCCCCGTTCCCGGCGATCCGGACACGTACAACC
ACTGGATGAGCGACGAGGACATCCTGAAGATGGCCCGCGTGGCGACTGAA
GGGCACGATGACGTGGTTGAATTTTCGGGTTTGGAATTTGGAGACTCTAT
GGATGGGATTAAGGGGGAGGATTGGGTTACCATTCCGCCGCCTTTATCCT
GGTTTAAGGATGAGGCCAAGAAGTAAATGCTGCGCCTGTCTCTCCTTTTG
CTGGCCTCGGCCACGTTCAGCAGTGCCTTTGTCTTCCCTGCTAGCCGGGT
GGGTAGCAGAATCGTCGCAGAGCCACTAACCAAGCTGCATGTCGTCGTCT
CCGAAACCACCCGTGAAGGGGTCCCGATGCCCCAACCCAGCATCAAGCCC
GCCTCTGACAAACTCTTCGTGTACCTGTGGATCGACCACCTGGGCAACCG
TGTCTACCGTGCAACCCGCAATATCGGGGCCTCTCCCCGAGCCATCCAGC
TCTGGAACCCCCTCGCCACCGATGAAGAGCAGAGCTACCCCGAGACTGGC
GTCTCCACCGCTCCTTCTTTCACCAAGTACGAGATGCTGGGCGAGGAAAA
CCTGGATGCGTGGGTAGAGAATGGGTTTGGTGAAATGGATGATGTGGAGG
CTTCTCCCCTAGCTTATACCATTGAGGGCGGGGACGACGCGTCAGCTACC
GCAAACGCGGCCGCGGCTGCTACAGCTGGGGGGGAAGGAAATGAGGAAGC
GGAGATGACGAGTGAGGAGATCGAGGAATCCATCAGTGCGTACAACGAAT
ACTACCCGCCCGCGGACTTCAAGAGCATGGTGACGGCGATGGAGAAGAGC
TGGCGGACCATCATTTTGTCGCGAGGAAAACAAGGAGCCAAGTCCATGCG
AGAATTTTACAGGGATCTGCACAAGGCTCACCCTGAGCTGGAGCAAAAAG
TCTGGATCATGGAGACGCACGCCACTCGCTCCCCCGTTCCCGGCGATCCG
GACACGTACAACCACTGGATGAGCGACGAGGACATCCTGAAGATGGCCCG
CGTGGCGACTGAAGGGCACGATGACGTGGTTGAATTTTCGGGTTTGGAAT
TTGGAGACTCTATGGATGGGATTAAGGGGGAGGATTGGGTTACCATTCCG
CCGCCTTTATCCTGGTTTAAGGATGAGGCCAAGAAGTAAATGCTGCGCCT
GTCTCTCCTTTTGCTGGCCTCGGCCACGTTCAGCAGTGCCTTTGTCTTCC
CTGCTAGCCGGGTGGGTAGCAGAATCGTCGCAGAGCCACTAACCAAGCTG
CATGTCGTCGTCTCCGAAACCACCCGTGAAGGGGTCCCGATGCCCCAACC
CAGCATCAAGCCCGCCTCTGACAAACTCTTCGTGTACCTGTGGATCGACC
ACCTGGGCAACCGTGTCTACCGTGCAACCCGCAATATCGGGGCCTCTCCC
CGAGCCATCCAGCTCTGGAACCCCCTCGCCACCGATGAAGAGCAGAGCTA
CCCCGAGACTGGCGTCTCCACCGCTCCTTCTTTCACCAAGTACGAGATGC
TGGGCGAGGAAAACCTGGATGCGTGGGTAGAGAATGGGTTTGGTGAAATG
GATGATGTGGAGGCTTCTCCCCTAGCTTATACCATTGAGGGCGGGGACGA
CGCGTCAGCTACCGCAAACGCGGCCGCGGCTGCTACAGCTGGGGGGGAAG
GAAATGAGGAAGCGGAGATGACGAGTGAGGAGATCGAGGAATCCATCAGT
GCGTACAACGAATACTACCCGCCCGCGGACTTCAAGAGCATGGTGACGGC
GATGGAGAAGAGCTGGCGGACCATCATTTTGTCGCGAGGAAAACAAGGAG
CCAAGTCCATGCGAGAATTTTACAGGGATCTGCACAAGGCTCACCCTGAG
CTGGAGCAAAAAGTCTGGATCATGGAGACGCACGCCACTCGCTCCCCCGT
TCCCGGCGATCCGGACACGTACAACCACTGGATGAGCGACGAGGACATCC
TGAAGATGGCCCGCGTGGCGACTGAAGGGCACGATGACGTGGTTGAATTT
TCGGGTTTGGAATTTGGAGACTCTATGGATGGGATTAAGGGGGAGGATTG
GGTTACCATTCCGCCGCCTTTATCCTGGTTTAAGGATGAGGCCAAGAAGT
AAATGCTGCGCCTGTCTCTCCTTTTGCTGGCCTCGGCCACGTTCAGCAGT
GCCTTTGTCTTCCCTGCTAGCCGGGTGGGTAGCAGAATCGTCGCAGAGCC
ACTAACCAAGCTGCATGTCGTCGTCTCCGAAACCACCCGTGAAGGGGTCC
CGATGCCCCAACCCAGCATCAAGCCCGCCTCTGACAAACTCTTCGTGTAC
CTGTGGATCGACCACCTGGGCAACCGTGTCTACCGTGCAACCCGCAATAT
CGGGGCCTCTCCCCGAGCCATCCAGCTCTGGAACCCCCTCGCCACCGATG
AAGAGCAGAGCTACCCCGAGACTGGCGTCTCCACCGCTCCTTCTTTCACC
AAGTACGAGATGCTGGGCGAGGAAAACCTGGATGCGTGGGTAGAGAATGG
GTTTGGTGAAATGGATGATGTGGAGGCTTCTCCCCTAGCTTATACCATTG
AGGGCGGGGACGACGCGTCAGCTACCGCAAACGCGGCCGCGGCTGCTACA
GCTGGGGGGGAAGGAAATGAGGAAGCGGAGATGACGAGTGAGGAGATCGA
GGAATCCATCAGTGCGTACAACGAATACTACCCGCCCGCGGACTTCAAGA
GCATGGTGACGGCGATGGAGAAGAGCTGGCGGACCATCATTTTGTCGCGA
GGAAAACAAGGAGCCAAGTCCATGCGAGAATTTTACAGGGATCTGCACAA
GGCTCACCCTGAGCTGGAGCAAAAAGTCTGGATCATGGAGACGCACGCCA
CTCGCTCCCCCGTTCCCGGCGATCCGGACACGTACAACCACTGGATGAGC
GACGAGGACATCCTGAAGATGGCCCGCGTGGCGACTGAAGGGCACGATGA
CGTGGTTGAATTTTCGGGTTTGGAATTTGGAGACTCTATGGATGGGATTA
AGGGGGAGGATTGGGTTACCATTCCGCCGCCTTTATCCTGGTTTAAGGAT
GAGGCCAAGAAGTAA

Synonyms

Publications