jgi.p|Nanoce1779_2|598471, mRNA_7365 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598471
Unique NamemRNA_7365
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1031
Alignment locationscaffold_19:335507..336537 +

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Properties
Property NameValue
TranscriptId598557
TrackFilteredModels2
ProteinId598471
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:335507..336537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598471gene_7365Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598471mRNA_7365-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7365CDS_7365Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7365 ID=mRNA_7365|Name=jgi.p|Nanoce1779_2|598471|organism=Nannochloropsis oceanica|type=mRNA|length=1031bp
CCCTATAATGCAACGGTGATGACGGACATTAACGGCAGCAGCAGCAGCAG
CAATAGCAGCAGCAGCAACAGAGGGAAGAGCGTAGTGGTAGAAGTAAGTC
TGAACGGGCAGCAGTGGACACGCTCAGGACGCACCTTCCACTATTGTCCA
TCTTCCTCCTCATCTTCTTTGAGAAAAGGAGACGAGGAGGAGGAGGAGGA
GATCGACGACGAAAGAGAGAACGAAGAGTGCCTCGCTGCCCATGATAGTT
GTCTACCTGGATGGACGGGCAAAAACTGCACGTTGAAATGCCCCGGTAAT
GCGAATAACCCATGTAATGGAGAAGGATTCTGTCTGGCTGTTGGTACAGG
AGAAGAAGGGATGGATGAAGAGGAGGCGTCGTGTGTATGTAAGCCTGGAT
TTGAGGGCGTGGCGTGCGATGTCGGGGTGATAGTGGCCAGTAGTACCACT
GAAAGCAGCAACAACAGCACCAGCAGTACATCATTATCGAAGACCGTCGC
TTCTTCCTCTATCTCCTCGGAGCCAGGCAGCAGCAGCAGCACAGATTCTT
CTGCCATGCGACAGGGGTTATTGCTGGGCATGGGGGCGTGCCTTCTCCTC
CTAACCCTCGCTGCAGTCGCTGTGTACGTAAAGCGAGTAGAAGTTCTGGA
ATTTATCTTTTGGACGTTGGCAGCCTCGCGTTTTGAGCGGTTACAGCATG
GGCAGGAACAGGGTGATAGCCTAGGAGAGGTTGAGGAAGGACGGCAGTCG
GTGGAGCTGACTGCGGCGTCGAGTTCACTGCAGCAGTTGGAGAACGAGGA
AGTAGGAGAAGTGACTGTTATGTGATTTTGAAAGCGAAAATGAAAGAAAC
AAGAGCATGCGTCCGATGACCTGAGCGTGGTGTGTTTGACGCAGTAAGCA
TGGGAGGGGTATGGGAATAGGGATATCAGAAGTGAAAAACGATGTTACGA
TCTCAAAATCGCAAGCTTACCACAAATTGTGGCGTTGAGATGCGTCCCAC
GGCCCCGATTATTCATATTTCTTCATTTTCG
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protein sequence of jgi.p|Nanoce1779_2|598471

>mRNA_7365-protein ID=mRNA_7365-protein|Name=jgi.p|Nanoce1779_2|598471|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MTDINGSSSSSNSSSSNRGKSVVVEVSLNGQQWTRSGRTFHYCPSSSSSS
LRKGDEEEEEEIDDERENEECLAAHDSCLPGWTGKNCTLKCPGNANNPCN
GEGFCLAVGTGEEGMDEEEASCVCKPGFEGVACDVGVIVASSTTESSNNS
TSSTSLSKTVASSSISSEPGSSSSTDSSAMRQGLLLGMGACLLLLTLAAV
AVYVKRVEVLEFIFWTLAASRFERLQHGQEQGDSLGEVEEGRQSVELTAA
SSSLQQLENEEVGEVTVM*
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mRNA from alignment at scaffold_19:335507..336537+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7365 ID=mRNA_7365|Name=jgi.p|Nanoce1779_2|598471|organism=Nannochloropsis oceanica|type=mRNA|length=1031bp|location=Sequence derived from alignment at scaffold_19:335507..336537+ (Nannochloropsis oceanica)
CCCTATAATGCAACGGTGATGACGGACATTAACGGCAGCAGCAGCAGCAG
CAATAGCAGCAGCAGCAACAGAGGGAAGAGCGTAGTGGTAGAAGTAAGTC
TGAACGGGCAGCAGTGGACACGCTCAGGACGCACCTTCCACTATTGTCCA
TCTTCCTCCTCATCTTCTTTGAGAAAAGGAGACGAGGAGGAGGAGGAGGA
GATCGACGACGAAAGAGAGAACGAAGAGTGCCTCGCTGCCCATGATAGTT
GTCTACCTGGATGGACGGGCAAAAACTGCACGTTGAAATGCCCCGGTAAT
GCGAATAACCCATGTAATGGAGAAGGATTCTGTCTGGCTGTTGGTACAGG
AGAAGAAGGGATGGATGAAGAGGAGGCGTCGTGTGTATGTAAGCCTGGAT
TTGAGGGCGTGGCGTGCGATGTCGGGGTGATAGTGGCCAGTAGTACCACT
GAAAGCAGCAACAACAGCACCAGCAGTACATCATTATCGAAGACCGTCGC
TTCTTCCTCTATCTCCTCGGAGCCAGGCAGCAGCAGCAGCACAGATTCTT
CTGCCATGCGACAGGGGTTATTGCTGGGCATGGGGGCGTGCCTTCTCCTC
CTAACCCTCGCTGCAGTCGCTGTGTACGTAAAGCGAGTAGAAGTTCTGGA
ATTTATCTTTTGGACGTTGGCAGCCTCGCGTTTTGAGCGGTTACAGCATG
GGCAGGAACAGGGTGATAGCCTAGGAGAGGTTGAGGAAGGACGGCAGTCG
GTGGAGCTGACTGCGGCGTCGAGTTCACTGCAGCAGTTGGAGAACGAGGA
AGTAGGAGAAGTGACTGTTATGTGATTTTGAAAGCGAAAATGAAAGAAAC
AAGAGCATGCGTCCGATGACCTGAGCGTGGTGTGTTTGACGCAGTAAGCA
TGGGAGGGGTATGGGAATAGGGATATCAGAAGTGAAAAACGATGTTACGA
TCTCAAAATCGCAAGCTTACCACAAATTGTGGCGTTGAGATGCGTCCCAC
GGCCCCGATTATTCATATTTCTTCATTTTCG
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Coding sequence (CDS) from alignment at scaffold_19:335507..336537+

>mRNA_7365 ID=mRNA_7365|Name=jgi.p|Nanoce1779_2|598471|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at scaffold_19:335507..336537+ (Nannochloropsis oceanica)
ATGACGGACATTAACGGCAGCAGCAGCAGCAGCAATAGCAGCAGCAGCAA
CAGAGGGAAGAGCGTAGTGGTAGAAGTAAGTCTGAACGGGCAGCAGTGGA
CACGCTCAGGACGCACCTTCCACTATTGTCCATCTTCCTCCTCATCTTCT
TTGAGAAAAGGAGACGAGGAGGAGGAGGAGGAGATCGACGACGAAAGAGA
GAACGAAGAGTGCCTCGCTGCCCATGATAGTTGTCTACCTGGATGGACGG
GCAAAAACTGCACGTTGAAATGCCCCGGTAATGCGAATAACCCATGTAAT
GGAGAAGGATTCTGTCTGGCTGTTGGTACAGGAGAAGAAGGGATGGATGA
AGAGGAGGCGTCGTGTGTATGTAAGCCTGGATTTGAGGGCGTGGCGTGCG
ATGTCGGGGTGATAGTGGCCAGTAGTACCACTGAAAGCAGCAACAACAGC
ACCAGCAGTACATCATTATCGAAGACCGTCGCTTCTTCCTCTATCTCCTC
GGAGCCAGGCAGCAGCAGCAGCACAGATTCTTCTGCCATGCGACAGGGGT
TATTGCTGGGCATGGGGGCGTGCCTTCTCCTCCTAACCCTCGCTGCAGTC
GCTGTGTACGTAAAGCGAGTAGAAGTTCTGGAATTTATCTTTTGGACGTT
GGCAGCCTCGCGTTTTGAGCGGTTACAGCATGGGCAGGAACAGGGTGATA
GCCTAGGAGAGGTTGAGGAAGGACGGCAGTCGGTGGAGCTGACTGCGGCG
TCGAGTTCACTGCAGCAGTTGGAGAACGAGGAAGTAGGAGAAGTGACTGT
TATGTGA
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Synonyms
Publications