jgi.p|Nanoce1779_2|598469, mRNA_7364 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598469
Unique NamemRNA_7364
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1207
Alignment locationscaffold_19:332601..334479 +

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Properties
Property NameValue
TranscriptId598555
TrackFilteredModels2
ProteinId598469
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:332601..334479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598469gene_7364Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598469mRNA_7364-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7364CDS_7364Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7364 ID=mRNA_7364|Name=jgi.p|Nanoce1779_2|598469|organism=Nannochloropsis oceanica|type=mRNA|length=1207bp
ACAGACGACAAGAAAAGCAAGGGTCCTCCCAAGATCAGCAAGCAAGCACT
CGAGGAAGCACTCAACTATGAGCAAAATCTGTGGTGTCAAACGACGTTGC
CTCTTGTATGGCATTGGTGCGGCACTAGTGCCCGCCATTGTGATTGCATC
TTTAGTAGGGGTCTATTACCCCAGGGCCCCCGAAATCACTGCGAACGAAA
CCACCATTAACACCTTCAAGTTCAACGGAGTGGAATCTGTTAGCGTAGAC
GCTGACATAAACCTTGAAATCGTCAACAGCAACAAGCACTATCCCATTGC
GTTTGATACTGTGGAGCTTGAATTCTACCTCCCCGCTAGTCCCGACAAGC
CTCTTGGGTTTGGACAACTAGACGGGGGGGTGATACCAGCCGGGGCGACG
ACGACAAGGAATTTACATACTGATTTCGAAGCATCATTGAATCTGCTTGG
CAACAGCTTCATGAGTGATATAAAGAAAGGATCCTCCGGACTTATTGTCA
AAGGCAACGTGCTAGGATACTCCACCATTTTAAAAAGTGATTTCCGATTG
TCCTCCGAGTTTGAATGCGACCTTAGTTATACATGGAATGATCGCACAAC
CCACAAGGACTGCCAAAGCACCAAAAAAGTGATTCTATTGAGGTCAAAGT
AAGATTCCTACGAGAGTCATTACACATGGAAGGAGAGAAAGGGATAGTCT
CGTAATTTGATTAGAAATAGGCTTGGATGTAGAAGCATACGTTCCCTCAT
CTTGATAGATGAGCGCGTTGACGCGAACTTGCGTCGCTTTTCTTGGCTGT
CCTCAAACCAACTCATAACACGATCTCCGTCCATCAAGATGTATCATTAT
ACAACTTGATACGCTTTTAATTTTGACACCACACCTTATATGCACATGCA
CCACCATACAGTCATGCAAAAGGCGCCTACCGTACGTTACGTGGCCCATC
GTCTGTTGCTTTATTTGTTCTGCCTCCGCGTCTGCGTCTCCTAATCCCGA
TCAGCCTCACCACCACAACCCCGTCATGACACTATCACCATCCTCTACCT
CGCGAAAAGTTAGACAATGGTCCCGGTCTCGAATGACGCTCTCCTATTTC
TCCCTCCTGTCGGTGCTGTCTACCCTCGCTTGTGCCTACAGCCCTATGGA
TGGGAGCAGCCAAGTCTGTCGTGTGGTCCACCTCGACGAGACGAGTCTCC
CCTTTCC
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protein sequence of jgi.p|Nanoce1779_2|598469

>mRNA_7364-protein ID=mRNA_7364-protein|Name=jgi.p|Nanoce1779_2|598469|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MSKICGVKRRCLLYGIGAALVPAIVIASLVGVYYPRAPEITANETTINTF
KFNGVESVSVDADINLEIVNSNKHYPIAFDTVELEFYLPASPDKPLGFGQ
LDGGVIPAGATTTRNLHTDFEASLNLLGNSFMSDIKKGSSGLIVKGNVLG
YSTILKSDFRLSSEFECDLSYTWNDRTTHKDCQSTKKVILLRSK*
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mRNA from alignment at scaffold_19:332601..334479+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7364 ID=mRNA_7364|Name=jgi.p|Nanoce1779_2|598469|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at scaffold_19:332601..334479+ (Nannochloropsis oceanica)
ACAGACGACAAGAAAAGCAAGGGTCCTCCCAAGATCAGCAAGCAAGCACT
CGAGGAAGCACTCAACTATGAGCAAAATCTGTGGTGTCAAACGACGTTGC
CTCTTGTATGGCATTGGTGCGGCACTAGTGCCCGCCATTGTGATTGCATC
TTTAGTAGGGGTCTATTACCCCAGGGGTGAGTGAGGGAGCGGAGGGAGAG
GGAGAGAGAACTGGAGAGTCGTAGAGGGGCGACGGAAAGGGTTCATACAT
GTAAGGCTGCTGTCGCGGTCAATCAATCCTAGTATAGAGACAATTACAGG
TATTTACAGAGTAAATCACATCTCGTTTATCATTGTTCTCCCCCTACCCC
TCTCTTGCACCTAACCGCACAGCCCCCGAAATCACTGCGAACGAAACCAC
CATTAACACCTTCAAGTTCAACGGAGTGGAATCTGTTAGCGTAGACGCTG
ACATAAACCTTGAAATCGTCAACAGCAACAAGCACTATCCCATTGCGTTT
GATACTGTGGAGCTTGAATTCTACCTCCCCGCTAGTCCCGACAAGCCTCT
TGGGTTTGGACAACTAGACGGGGGGGTGATACCAGCCGGGGCGACGACGA
CAAGGAATTTACATACTGATTTCGAAGCATCATTGAATCTGCTTGGTTCG
TATGCAGAGGAGTGAGAGGAAAAGGAAGAGAGAAATGGAAAAAAGGACGT
GGTGCTGGTGGTGACAGTGAGAGACGGGCATCCACCCACATCATTCTCAT
CTTCCGTTCTTCTCCTCCCGTCCAACCAAATAAACAGGCAACAGCTTCAT
GAGTGATATAAAGAAAGGATCCTCCGGACTTATTGTCAAAGGCAACGTGC
TAGGATACTCCACCATTTTAAAAAGTGATTTCCGATTGTCCTCCGAGTTT
GAATGCGACCTTAGTTATACATGGAATGATCGCACAACCCACAAGGACTG
CCAAAGCACCAAAAAAGTGATTCTATTGAGGTCAAAGTAAGATTCCTACG
AGAGTCATTACACATGGAAGGAGAGAAAGGGATAGTCTCGTAATTTGATT
AGAAATAGGTAAGAGAAGCTGTGTGTGTGTTATGGCAGTGAACGATGTGA
CTCTCATGAAATGGATGACCACCCGTGACAAGAAATCAGTGCATGTTGGT
CAACAAGGTAGTCAACAAAAAACTTAATATTTTCGCGAAAACCTAGCGAC
AAAAAATAATTTATCGCATGTTGTCGTTTGTTCGTCCCTCGCACGTCTGT
CTCCGCGGCTCGGCACGGTTGTCGTGTACGCGCGCACACGGCGACCGCCC
GCCAAAGCGACAGATGGAAAATAAAATAGGTGTCTTTGATTTTACATAAA
ACGCTAAAAAATTCTTCCTGTGCTTTCCTCTTGCTCACATAGGCTTGGAT
GTAGAAGCATACGTTCCCTCATCTTGATAGATGAGCGCGTTGACGCGAAC
TTGCGTCGCTTTTCTTGGCTGTCCTCAAACCAACTCATAACACGATCTCC
GTCCATCAAGATGTATCATTATACAACTTGATACGCTTTTAATTTTGACA
CCACACCTTATATGCACATGCACCACCATACAGTCATGCAAAAGGCGCCT
ACCGTACGTTACGTGGCCCATCGTCTGTTGCTTTATTTGTTCTGCCTCCG
CGTCTGCGTCTCCTAATCCCGATCAGCCTCACCACCACAACCCCGTCATG
ACACTATCACCATCCTCTACCTCGCGAAAAGTTAGACAATGGTCCCGGTC
TCGAATGACGCTCTCCTATTTCTCCCTCCTGTCGGTGCTGTCTACCCTCG
CTTGTGCCTACAGCCCTATGGATGGGAGCAGCCAAGTCTGTCGTGTGGTC
CACCTCGACGAGACGAGTCTCCCCTTTCC
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Coding sequence (CDS) from alignment at scaffold_19:332601..334479+

>mRNA_7364 ID=mRNA_7364|Name=jgi.p|Nanoce1779_2|598469|organism=Nannochloropsis oceanica|type=CDS|length=1755bp|location=Sequence derived from alignment at scaffold_19:332601..334479+ (Nannochloropsis oceanica)
ATGAGCAAAATCTGTGGTGTCAAACGACGTTGCCTCTTGTATGGCATTGG
TGCGGCACTAGTGCCCGCCATTGTGATTGCATCTTTAGTAGGGGTCTATT
ACCCCAGGGCCCCCGAAATCACTGCGAACGAAACCACCATTAACACCTTC
AAGTTCAACGGAGTGGAATCTGTTAGCGTAGACGCTGACATAAACCTTGA
AATCGTCAACAGCAACAAGCACTATCCCATTGCGTTTGATACTGTGGAGC
TTGAATTCTACCTCCCCGCTAGTCCCGACAAGCCTCTTGGGTTTGGACAA
CTAGACGGGGGGGTGATACCAGCCGGGGCGACGACGACAAGGAATTTACA
TACTGATTTCGAAGCATCATTGAATCTGCTTGGCAACAGCTTCATGAGTG
ATATAAAGAAAGGATCCTCCGGACTTATTGTCAAAGGCAACGTGCTAGGA
TACTCCACCATTTTAAAAAGTGATTTCCGATTGTCCTCCGAGTTTGAATG
CGACCTTAGTTATACATGGAATGATCGCACAACCCACAAGGACTGCCAAA
GCACCAAAAAAGTGATTCTATTGAGGTCAAAGTAAATGAGCAAAATCTGT
GGTGTCAAACGACGTTGCCTCTTGTATGGCATTGGTGCGGCACTAGTGCC
CGCCATTGTGATTGCATCTTTAGTAGGGGTCTATTACCCCAGGGCCCCCG
AAATCACTGCGAACGAAACCACCATTAACACCTTCAAGTTCAACGGAGTG
GAATCTGTTAGCGTAGACGCTGACATAAACCTTGAAATCGTCAACAGCAA
CAAGCACTATCCCATTGCGTTTGATACTGTGGAGCTTGAATTCTACCTCC
CCGCTAGTCCCGACAAGCCTCTTGGGTTTGGACAACTAGACGGGGGGGTG
ATACCAGCCGGGGCGACGACGACAAGGAATTTACATACTGATTTCGAAGC
ATCATTGAATCTGCTTGGCAACAGCTTCATGAGTGATATAAAGAAAGGAT
CCTCCGGACTTATTGTCAAAGGCAACGTGCTAGGATACTCCACCATTTTA
AAAAGTGATTTCCGATTGTCCTCCGAGTTTGAATGCGACCTTAGTTATAC
ATGGAATGATCGCACAACCCACAAGGACTGCCAAAGCACCAAAAAAGTGA
TTCTATTGAGGTCAAAGTAAATGAGCAAAATCTGTGGTGTCAAACGACGT
TGCCTCTTGTATGGCATTGGTGCGGCACTAGTGCCCGCCATTGTGATTGC
ATCTTTAGTAGGGGTCTATTACCCCAGGGCCCCCGAAATCACTGCGAACG
AAACCACCATTAACACCTTCAAGTTCAACGGAGTGGAATCTGTTAGCGTA
GACGCTGACATAAACCTTGAAATCGTCAACAGCAACAAGCACTATCCCAT
TGCGTTTGATACTGTGGAGCTTGAATTCTACCTCCCCGCTAGTCCCGACA
AGCCTCTTGGGTTTGGACAACTAGACGGGGGGGTGATACCAGCCGGGGCG
ACGACGACAAGGAATTTACATACTGATTTCGAAGCATCATTGAATCTGCT
TGGCAACAGCTTCATGAGTGATATAAAGAAAGGATCCTCCGGACTTATTG
TCAAAGGCAACGTGCTAGGATACTCCACCATTTTAAAAAGTGATTTCCGA
TTGTCCTCCGAGTTTGAATGCGACCTTAGTTATACATGGAATGATCGCAC
AACCCACAAGGACTGCCAAAGCACCAAAAAAGTGATTCTATTGAGGTCAA
AGTAA
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Synonyms
Publications