jgi.p|Nanoce1779_2|598465, mRNA_7363 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598465
Unique Name	mRNA_7363
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2080
Alignment location	scaffold_19:332258..334479 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598551
Track	FilteredModels2
ProteinId	598465

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:332258..334479 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598465	gene_7363	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598465	mRNA_7363-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7363	CDS_7363	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:332258..334479+
coding sequence from alignment at scaffold_19:332258..334479+

mRNA sequence

>mRNA_7363 ID=mRNA_7363|Name=jgi.p|Nanoce1779_2|598465|organism=Nannochloropsis oceanica|type=mRNA|length=2080bp
ATTCTCTCAACGGCCTTTCTTGCTTCCGTCCGTCTGTCTCGTTTCGTTGC
CTATTGATAAGAGGGACATATGCATCCCGGCACGCGATCTTTGCATCTTG
CACGTATGCGAGTTGTCCCTGTTTTGTCATGGACGGGGTGGGGTGTTCAA
GTGCTGCCTGAATGCGACGTATCCTCAAACATCCGAGGAACAAGCTACAC
CTTACAAAGTAAAGTAGACTATCCCTCTCATGGAAGAAGACGAGTAAAAC
GACAAGGCACACCATCAGCTTCTCTACAACTGTGCAAAATTATTCATCTC
TCAAGCCCATTGACAACTAATTGACATGCAAATTATAAACTTCACAGACG
ACAAGAAAAGCAAGGGTCCTCCCAAGATCAGCAAGCAAGCACTCGAGGAA
GCACTCAACTATGAGCAAAATCTGTGGTGTCAAACGACGTTGCCTCTTGT
ATGGCATTGGTGCGGCACTAGTGCCCGCCATTGTGATTGCATCTTTAGTA
GGGGTCTATTACCCCAGGGGTGAGTGAGGGAGCGGAGGGAGAGGGAGAGA
GAACTGGAGAGTCGTAGAGGGGCGACGGAAAGGGTTCATACATGTAAGGC
TGCTGTCGCGGTCAATCAATCCTAGTATAGAGACAATTACAGGTATTTAC
AGAGTAAATCACATCTCGTTTATCATTGTTCTCCCCCTACCCCTCTCTTG
CACCTAACCGCACAGCCCCCGAAATCACTGCGAACGAAACCACCATTAAC
ACCTTCAAGTTCAACGGAGTGGAATCTGTTAGCGTAGACGCTGACATAAA
CCTTGAAATCGTCAACAGCAACAAGCACTATCCCATTGCGTTTGATACTG
TGGAGCTTGAATTCTACCTCCCCGCTAGTCCCGACAAGCCTCTTGGGTTT
GGACAACTAGACGGGGGGGTGATACCAGCCGGGGCGACGACGACAAGGAA
TTTACATACTGATTTCGAAGCATCATTGAATCTGCTTGGCAACAGCTTCA
TGAGTGATATAAAGAAAGGATCCTCCGGACTTATTGTCAAAGGCAACGTG
CTAGGATACTCCACCATTTTAAAAAGTGATTTCCGATTGTCCTCCGAGTT
TGAATGCGACCTTAGTTATACATGGAATGATCGCACAACCCACAAGGACT
GCCAAAGCACCAAAAAAGTGATTCTATTGAGGTCAAAGTAAGATTCCTAC
GAGAGTCATTACACATGGAAGGAGAGAAAGGGATAGTCTCGTAATTTGAT
TAGAAATAGGTAAGAGAAGCTGTGTGTGTGTTATGGCAGTGAACGATGTG
ACTCTCATGAAATGGATGACCACCCGTGACAAGAAATCAGTGCATGTTGG
TCAACAAGGTAGTCAACAAAAAACTTAATATTTTCGCGAAAACCTAGCGA
CAAAAAATAATTTATCGCATGTTGTCGTTTGTTCGTCCCTCGCACGTCTG
TCTCCGCGGCTCGGCACGGTTGTCGTGTACGCGCGCACACGGCGACCGCC
CGCCAAAGCGACAGATGGAAAATAAAATAGGTGTCTTTGATTTTACATAA
AACGCTAAAAAATTCTTCCTGTGCTTTCCTCTTGCTCACATAGGCTTGGA
TGTAGAAGCATACGTTCCCTCATCTTGATAGATGAGCGCGTTGACGCGAA
CTTGCGTCGCTTTTCTTGGCTGTCCTCAAACCAACTCATAACACGATCTC
CGTCCATCAAGATGTATCATTATACAACTTGATACGCTTTTAATTTTGAC
ACCACACCTTATATGCACATGCACCACCATACAGTCATGCAAAAGGCGCC
TACCGTACGTTACGTGGCCCATCGTCTGTTGCTTTATTTGTTCTGCCTCC
GCGTCTGCGTCTCCTAATCCCGATCAGCCTCACCACCACAACCCCGTCAT
GACACTATCACCATCCTCTACCTCGCGAAAAGTTAGACAATGGTCCCGGT
CTCGAATGACGCTCTCCTATTTCTCCCTCCTGTCGGTGCTGTCTACCCTC
GCTTGTGCCTACAGCCCTATGGATGGGAGCAGCCAAGTCTGTCGTGTGGT
CCACCTCGACGAGACGAGTCTCCCCTTTCC

protein sequence of jgi.p|Nanoce1779_2|598465

>mRNA_7363-protein ID=mRNA_7363-protein|Name=jgi.p|Nanoce1779_2|598465|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MHPGTRSLHLARMRVVPVLSWTGWGVQVLPECDVSSNIRGTSYTLQSKVD
YPSHGRRRVKRQGTPSASLQLCKIIHLSSPLTTN*

mRNA from alignment at scaffold_19:332258..334479+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7363 ID=mRNA_7363|Name=jgi.p|Nanoce1779_2|598465|organism=Nannochloropsis oceanica|type=mRNA|length=2222bp|location=Sequence derived from alignment at scaffold_19:332258..334479+ (Nannochloropsis oceanica)
ATTCTCTCAACGGCCTTTCTTGCTTCCGTCCGTCTGTCTCGTTTCGTTGC
CTATTGATAAGAGGGACATATGCATCCCGGCACGCGATCTTTGCATCTTG
CACGTATGCGAGTTGTCCCTGTTTTGTCATGGACGGGGTGGGGTGTTCAA
GTGCTGCCTGAATGCGACGTATCCTCAAACATCCGAGGAACAAGCTACAC
CTTACAAAGTAAAGTAGACTATCCCTCTCATGGAAGAAGACGAGTAAAAC
GACAAGGCACACCATCAGCTTCTCTACAACTGTGCAAAATTATTCATCTC
TCAAGCCCATTGACAACTAATTGACATGCAAATTATAAACTTCACAGACG
ACAAGAAAAGCAAGGGTCCTCCCAAGATCAGCAAGCAAGCACTCGAGGAA
GCACTCAACTATGAGCAAAATCTGTGGTGTCAAACGACGTTGCCTCTTGT
ATGGCATTGGTGCGGCACTAGTGCCCGCCATTGTGATTGCATCTTTAGTA
GGGGTCTATTACCCCAGGGGTGAGTGAGGGAGCGGAGGGAGAGGGAGAGA
GAACTGGAGAGTCGTAGAGGGGCGACGGAAAGGGTTCATACATGTAAGGC
TGCTGTCGCGGTCAATCAATCCTAGTATAGAGACAATTACAGGTATTTAC
AGAGTAAATCACATCTCGTTTATCATTGTTCTCCCCCTACCCCTCTCTTG
CACCTAACCGCACAGCCCCCGAAATCACTGCGAACGAAACCACCATTAAC
ACCTTCAAGTTCAACGGAGTGGAATCTGTTAGCGTAGACGCTGACATAAA
CCTTGAAATCGTCAACAGCAACAAGCACTATCCCATTGCGTTTGATACTG
TGGAGCTTGAATTCTACCTCCCCGCTAGTCCCGACAAGCCTCTTGGGTTT
GGACAACTAGACGGGGGGGTGATACCAGCCGGGGCGACGACGACAAGGAA
TTTACATACTGATTTCGAAGCATCATTGAATCTGCTTGGTTCGTATGCAG
AGGAGTGAGAGGAAAAGGAAGAGAGAAATGGAAAAAAGGACGTGGTGCTG
GTGGTGACAGTGAGAGACGGGCATCCACCCACATCATTCTCATCTTCCGT
TCTTCTCCTCCCGTCCAACCAAATAAACAGGCAACAGCTTCATGAGTGAT
ATAAAGAAAGGATCCTCCGGACTTATTGTCAAAGGCAACGTGCTAGGATA
CTCCACCATTTTAAAAAGTGATTTCCGATTGTCCTCCGAGTTTGAATGCG
ACCTTAGTTATACATGGAATGATCGCACAACCCACAAGGACTGCCAAAGC
ACCAAAAAAGTGATTCTATTGAGGTCAAAGTAAGATTCCTACGAGAGTCA
TTACACATGGAAGGAGAGAAAGGGATAGTCTCGTAATTTGATTAGAAATA
GGTAAGAGAAGCTGTGTGTGTGTTATGGCAGTGAACGATGTGACTCTCAT
GAAATGGATGACCACCCGTGACAAGAAATCAGTGCATGTTGGTCAACAAG
GTAGTCAACAAAAAACTTAATATTTTCGCGAAAACCTAGCGACAAAAAAT
AATTTATCGCATGTTGTCGTTTGTTCGTCCCTCGCACGTCTGTCTCCGCG
GCTCGGCACGGTTGTCGTGTACGCGCGCACACGGCGACCGCCCGCCAAAG
CGACAGATGGAAAATAAAATAGGTGTCTTTGATTTTACATAAAACGCTAA
AAAATTCTTCCTGTGCTTTCCTCTTGCTCACATAGGCTTGGATGTAGAAG
CATACGTTCCCTCATCTTGATAGATGAGCGCGTTGACGCGAACTTGCGTC
GCTTTTCTTGGCTGTCCTCAAACCAACTCATAACACGATCTCCGTCCATC
AAGATGTATCATTATACAACTTGATACGCTTTTAATTTTGACACCACACC
TTATATGCACATGCACCACCATACAGTCATGCAAAAGGCGCCTACCGTAC
GTTACGTGGCCCATCGTCTGTTGCTTTATTTGTTCTGCCTCCGCGTCTGC
GTCTCCTAATCCCGATCAGCCTCACCACCACAACCCCGTCATGACACTAT
CACCATCCTCTACCTCGCGAAAAGTTAGACAATGGTCCCGGTCTCGAATG
ACGCTCTCCTATTTCTCCCTCCTGTCGGTGCTGTCTACCCTCGCTTGTGC
CTACAGCCCTATGGATGGGAGCAGCCAAGTCTGTCGTGTGGTCCACCTCG
ACGAGACGAGTCTCCCCTTTCC

Coding sequence (CDS) from alignment at scaffold_19:332258..334479+

>mRNA_7363 ID=mRNA_7363|Name=jgi.p|Nanoce1779_2|598465|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_19:332258..334479+ (Nannochloropsis oceanica)
ATGCATCCCGGCACGCGATCTTTGCATCTTGCACGTATGCGAGTTGTCCC
TGTTTTGTCATGGACGGGGTGGGGTGTTCAAGTGCTGCCTGAATGCGACG
TATCCTCAAACATCCGAGGAACAAGCTACACCTTACAAAGTAAAGTAGAC
TATCCCTCTCATGGAAGAAGACGAGTAAAACGACAAGGCACACCATCAGC
TTCTCTACAACTGTGCAAAATTATTCATCTCTCAAGCCCATTGACAACTA
ATTGA

Synonyms

Publications