jgi.p|Nanoce1779_2|598461, mRNA_7361 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598461
Unique NamemRNA_7361
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length628
Alignment locationscaffold_19:327535..328162 -

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Properties
Property NameValue
TranscriptId598547
TrackFilteredModels2
ProteinId598461
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:327535..328162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598461gene_7361Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598461mRNA_7361-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7361CDS_7361Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7361 ID=mRNA_7361|Name=jgi.p|Nanoce1779_2|598461|organism=Nannochloropsis oceanica|type=mRNA|length=628bp
CCTCCAAGCCTCCCCCCGCTCTCCCTCCTCCTCCTCCTGCCCCACACCCG
TCACCCATCCTTTCAGCCACACCGTTGGGACCCAATGAAAGGCCTCCCCC
TCTTCCCCCGTCAACGACACCGGCCCTTCCTTCCCGCCCTCCTTTCCGCC
CTCCTTTCCGCCCTCCAAGAACAACTCCTCATACACCTTCCTCCGAGCCT
TCATCTCCTCCTCCATTCTAGTCTTCCTCTCTTGGTACCTCTCCCGCATT
CTCACCAGTTTCTGATTCGCCTCCTCCACCTCCGCAACTACTTCTTGGGG
CAGCAACGACTCCAACACGTCCTCCCCCGGTCCCTCCCATCCTCTCCTCA
CATAGATAAGACAGTATGCATCCGCAGATCCCGCTTTCCTAACTCCCCCT
CCCCTTCCTCCCACTTCTCCTCCTCGTGCTGTTGCTGCCGCTGCTGCTGC
TGTACCGTTAGCCTTGTTGATGAGGGTCTCCTTCATCCCTTCCCTGCCGT
CATCATAATCGTACTCGTCTCTCTCTTCCTTTCCCTCCTCCTCCTCCTCC
ACCTTCTCTCTATCCCTGTCATCTCCCCCCTCATCCTCTGACACCAAATG
AATAACATCCTCCCTCGCCTCATTCCTA
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protein sequence of jgi.p|Nanoce1779_2|598461

>mRNA_7361-protein ID=mRNA_7361-protein|Name=jgi.p|Nanoce1779_2|598461|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MKGLPLFPRQRHRPFLPALLSALLSALQEQLLIHLPPSLHLLLHSSLPLL
VPLPHSHQFLIRLLHLRNYFLGQQRLQHVLPRSLPSSPHIDKTVCIRRSR
FPNSPSPSSHFSSSCCCCRCCCCTVSLVDEGLLHPFPAVIIIVLVSLFLS
LLLLLHLLSIPVISPLIL*
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mRNA from alignment at scaffold_19:327535..328162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7361 ID=mRNA_7361|Name=jgi.p|Nanoce1779_2|598461|organism=Nannochloropsis oceanica|type=mRNA|length=628bp|location=Sequence derived from alignment at scaffold_19:327535..328162- (Nannochloropsis oceanica)
CCTCCAAGCCTCCCCCCGCTCTCCCTCCTCCTCCTCCTGCCCCACACCCG
TCACCCATCCTTTCAGCCACACCGTTGGGACCCAATGAAAGGCCTCCCCC
TCTTCCCCCGTCAACGACACCGGCCCTTCCTTCCCGCCCTCCTTTCCGCC
CTCCTTTCCGCCCTCCAAGAACAACTCCTCATACACCTTCCTCCGAGCCT
TCATCTCCTCCTCCATTCTAGTCTTCCTCTCTTGGTACCTCTCCCGCATT
CTCACCAGTTTCTGATTCGCCTCCTCCACCTCCGCAACTACTTCTTGGGG
CAGCAACGACTCCAACACGTCCTCCCCCGGTCCCTCCCATCCTCTCCTCA
CATAGATAAGACAGTATGCATCCGCAGATCCCGCTTTCCTAACTCCCCCT
CCCCTTCCTCCCACTTCTCCTCCTCGTGCTGTTGCTGCCGCTGCTGCTGC
TGTACCGTTAGCCTTGTTGATGAGGGTCTCCTTCATCCCTTCCCTGCCGT
CATCATAATCGTACTCGTCTCTCTCTTCCTTTCCCTCCTCCTCCTCCTCC
ACCTTCTCTCTATCCCTGTCATCTCCCCCCTCATCCTCTGACACCAAATG
AATAACATCCTCCCTCGCCTCATTCCTA
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Coding sequence (CDS) from alignment at scaffold_19:327535..328162-

>mRNA_7361 ID=mRNA_7361|Name=jgi.p|Nanoce1779_2|598461|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_19:327535..328162- (Nannochloropsis oceanica)
ATGAAAGGCCTCCCCCTCTTCCCCCGTCAACGACACCGGCCCTTCCTTCC
CGCCCTCCTTTCCGCCCTCCTTTCCGCCCTCCAAGAACAACTCCTCATAC
ACCTTCCTCCGAGCCTTCATCTCCTCCTCCATTCTAGTCTTCCTCTCTTG
GTACCTCTCCCGCATTCTCACCAGTTTCTGATTCGCCTCCTCCACCTCCG
CAACTACTTCTTGGGGCAGCAACGACTCCAACACGTCCTCCCCCGGTCCC
TCCCATCCTCTCCTCACATAGATAAGACAGTATGCATCCGCAGATCCCGC
TTTCCTAACTCCCCCTCCCCTTCCTCCCACTTCTCCTCCTCGTGCTGTTG
CTGCCGCTGCTGCTGCTGTACCGTTAGCCTTGTTGATGAGGGTCTCCTTC
ATCCCTTCCCTGCCGTCATCATAATCGTACTCGTCTCTCTCTTCCTTTCC
CTCCTCCTCCTCCTCCACCTTCTCTCTATCCCTGTCATCTCCCCCCTCAT
CCTCTGA
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Synonyms
Publications