jgi.p|Nanoce1779_2|598457, mRNA_7360 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598457
Unique Name	mRNA_7360
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2082
Alignment location	scaffold_19:324862..326943 +

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Properties


Property Name	Value
TranscriptId	598543
Track	FilteredModels2
ProteinId	598457

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:324862..326943 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598457	gene_7360	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598457	mRNA_7360-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7360	CDS_7360	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:324862..326943+
coding sequence from alignment at scaffold_19:324862..326943+

mRNA sequence

>mRNA_7360 ID=mRNA_7360|Name=jgi.p|Nanoce1779_2|598457|organism=Nannochloropsis oceanica|type=mRNA|length=2082bp
TGTGTGTGTGTACGTGTGTGTGGGTGTGGGTGGGTGGATGTGTGGGTGTG
GGTGGGTGGATGTGTGGGTGTGTGGGTGTGTCAAGTGAATGACGAAAATG
GATACGTGCAAGAGATGTCCGAGTATAAGTCTGATTATTGGAAAAGAATC
GTTATTTCGTGTTTGCTGTGCGTGTTTGTTCCGACATGGACGACCCGAGG
CCGAGTGAGATGGGTGGGGAGGTTTTGGGGGAGGGAGGAGGGAATGTTCC
CCCTATTTGAGTTCTATATTCATGGTACGTGAATCTAAAGTCCAAGAGAG
AGGAAAGTTTATATAAATATATATAATATTATCGAAGAAATCAATGCGCG
AGGAATGTCGCCTATATGAATGCGATTGATTTTGGTCGGAAAATGAGCTC
GTACAGCAAAGCACAAACGCGCTCGCCAATCCGTTGGTATCGCCCGTGAA
AAGGAAGAAAAGCACGAGCACACATACACAACACACACACACCCACTCGC
ACGCCTGCCCCACAGCCTTGTCATCCATTTCTTCATCCTACACCCACTCC
GCGAAATCTAGGTTGGGAGAGGCAAGGCAGACGCGCGAAGCAAGGCGCAA
GGAAGAAGGGAAAAGACGACGCTGCAGCCAACACCACACACCGATACTAC
CACGGTATGAGTGCCCGCTCCCGCCGTCCCAGCACCTCGGCTAGGGGCCG
CGGGGCAGGCCCACCCCAGACCGGCCTCGAAGAGCTGGTGCATGGGCAGT
TTTCCCACCTTCACCCTTACCGCGCCGGAGATCTGATCACCTACCCGCGT
TGCATTTCCTCGGACCACCCGCAAGGCAGTGGTAATTGTGCCAAGAATCC
ACATTGTCTGTATGGGCTGGGGGAAAAAAAGGAGGGAATATGGCACACAA
GTGGAAAGAATTCGTTGGTGCAGGCCTTGGGGGAGGACCCGGCCGCGCTG
ATGAGGGGATGGAAGGCTCATCCTTCCGCTGCAGCTAGCAAAGGCATGAA
AAAAGGAGGAGGAAATGGTGGAGTAGGAAGGAAGGGGGGAAGTAAGAAAA
AAGCGGGGACTGTGGCTGTGCCGACAACGACATCCGACGTGGCGAAAGGT
GAAGGAGGAGGAGAAGGAGGGAAGAGGAAGAAGCGGGGACGGCCTTCGGG
TGCGGGAGCGGCCGGAGTGAAGAAGAGAAGGAGTAGCAAGGGCACCGAAG
ATGACGAGGATGCGGACAGGAAAGAGGAGGACGGGGGTGGAGCAACGGCC
ATGGCGGTCGTTCCTTTCCTCCCTCCCCCTCCTTCCTCATCCGCAGCAAC
AGCAGCAGCAGCAGCAGCAACAGATTACCGCGCCACCCCCACGGGCCTGA
CAAATCTAGGAGCCACCTGTTACTTGAATGTCCTCCTCCAAGCCATGTTC
TTCAACAAGAGTTTTCGGAAGGCTGTTTACGAATTCCGCCCTCCGTCCTC
CTCCTCCTCTTCCGCGGGAGGCAGCAAGGGGGAAAGGATGGTAGTGATCT
TGCAGGAGCTACAGCGGGTGTTTGCACATATGCATTTGGGGATGGCCCGG
AACTACAATCCTCACGAGTTTGTGAGACTGCTGCATCTGGACAGGGGGGA
GCAGCAGGATCCTCAGGAGTTCCATCGGCTTTTCATGAACAAGATTGAAG
AGTGCTTCGGTGCCTTATCGCCGTCTTCTATAGGTACCACCTCCCTCGCT
TCCTCGACCTCGGGGGAGGGAGGGTCAAGGGGATTGGCAGGAACGGTGAG
GGGGCTGCACAGGGGGAGATTAAAGTATGTGACCACGTGTCAGTGCTGTC
AGACAGCCTCAAGACGGAAGGAAAGCTTCGATGAACTTGAATTGAGCCTG
TCATCCCTCCCGCCCTCCTCCTCGTCCTGGACGATTGCTGGGTGTATAGC
GCGGTACTTGGCGCCCGAGCGCTTGGAGGGGGAAAATCAATACATGTGCG
GTCAATGCCATGATAAACGGGATGCTGAGCGAAGAATTGATTTGACGGAG
CTCCCGCCGGTGTTGAACGTGCATCTTCTTCGATACGTGTATGTGGGGGG
GGAGAAGAAAAAGGTCAGGGAGCTGGTACAGC

protein sequence of jgi.p|Nanoce1779_2|598457

>mRNA_7360-protein ID=mRNA_7360-protein|Name=jgi.p|Nanoce1779_2|598457|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MSARSRRPSTSARGRGAGPPQTGLEELVHGQFSHLHPYRAGDLITYPRCI
SSDHPQGSGNCAKNPHCLYGLGEKKEGIWHTSGKNSLVQALGEDPAALMR
GWKAHPSAAASKGMKKGGGNGGVGRKGGSKKKAGTVAVPTTTSDVAKGEG
GGEGGKRKKRGRPSGAGAAGVKKRRSSKGTEDDEDADRKEEDGGGATAMA
VVPFLPPPPSSSAATAAAAAATDYRATPTGLTNLGATCYLNVLLQAMFFN
KSFRKAVYEFRPPSSSSSSAGGSKGERMVVILQELQRVFAHMHLGMARNY
NPHEFVRLLHLDRGEQQDPQEFHRLFMNKIEECFGALSPSSIGTTSLASS
TSGEGGSRGLAGTVRGLHRGRLKYVTTCQCCQTASRRKESFDELELSLSS
LPPSSSSWTIAGCIARYLAPERLEGENQYMCGQCHDKRDAERRIDLTELP
PVLNVHLLRYVYVGGEKKKVRELVQ

mRNA from alignment at scaffold_19:324862..326943+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7360 ID=mRNA_7360|Name=jgi.p|Nanoce1779_2|598457|organism=Nannochloropsis oceanica|type=mRNA|length=2082bp|location=Sequence derived from alignment at scaffold_19:324862..326943+ (Nannochloropsis oceanica)
TGTGTGTGTGTACGTGTGTGTGGGTGTGGGTGGGTGGATGTGTGGGTGTG
GGTGGGTGGATGTGTGGGTGTGTGGGTGTGTCAAGTGAATGACGAAAATG
GATACGTGCAAGAGATGTCCGAGTATAAGTCTGATTATTGGAAAAGAATC
GTTATTTCGTGTTTGCTGTGCGTGTTTGTTCCGACATGGACGACCCGAGG
CCGAGTGAGATGGGTGGGGAGGTTTTGGGGGAGGGAGGAGGGAATGTTCC
CCCTATTTGAGTTCTATATTCATGGTACGTGAATCTAAAGTCCAAGAGAG
AGGAAAGTTTATATAAATATATATAATATTATCGAAGAAATCAATGCGCG
AGGAATGTCGCCTATATGAATGCGATTGATTTTGGTCGGAAAATGAGCTC
GTACAGCAAAGCACAAACGCGCTCGCCAATCCGTTGGTATCGCCCGTGAA
AAGGAAGAAAAGCACGAGCACACATACACAACACACACACACCCACTCGC
ACGCCTGCCCCACAGCCTTGTCATCCATTTCTTCATCCTACACCCACTCC
GCGAAATCTAGGTTGGGAGAGGCAAGGCAGACGCGCGAAGCAAGGCGCAA
GGAAGAAGGGAAAAGACGACGCTGCAGCCAACACCACACACCGATACTAC
CACGGTATGAGTGCCCGCTCCCGCCGTCCCAGCACCTCGGCTAGGGGCCG
CGGGGCAGGCCCACCCCAGACCGGCCTCGAAGAGCTGGTGCATGGGCAGT
TTTCCCACCTTCACCCTTACCGCGCCGGAGATCTGATCACCTACCCGCGT
TGCATTTCCTCGGACCACCCGCAAGGCAGTGGTAATTGTGCCAAGAATCC
ACATTGTCTGTATGGGCTGGGGGAAAAAAAGGAGGGAATATGGCACACAA
GTGGAAAGAATTCGTTGGTGCAGGCCTTGGGGGAGGACCCGGCCGCGCTG
ATGAGGGGATGGAAGGCTCATCCTTCCGCTGCAGCTAGCAAAGGCATGAA
AAAAGGAGGAGGAAATGGTGGAGTAGGAAGGAAGGGGGGAAGTAAGAAAA
AAGCGGGGACTGTGGCTGTGCCGACAACGACATCCGACGTGGCGAAAGGT
GAAGGAGGAGGAGAAGGAGGGAAGAGGAAGAAGCGGGGACGGCCTTCGGG
TGCGGGAGCGGCCGGAGTGAAGAAGAGAAGGAGTAGCAAGGGCACCGAAG
ATGACGAGGATGCGGACAGGAAAGAGGAGGACGGGGGTGGAGCAACGGCC
ATGGCGGTCGTTCCTTTCCTCCCTCCCCCTCCTTCCTCATCCGCAGCAAC
AGCAGCAGCAGCAGCAGCAACAGATTACCGCGCCACCCCCACGGGCCTGA
CAAATCTAGGAGCCACCTGTTACTTGAATGTCCTCCTCCAAGCCATGTTC
TTCAACAAGAGTTTTCGGAAGGCTGTTTACGAATTCCGCCCTCCGTCCTC
CTCCTCCTCTTCCGCGGGAGGCAGCAAGGGGGAAAGGATGGTAGTGATCT
TGCAGGAGCTACAGCGGGTGTTTGCACATATGCATTTGGGGATGGCCCGG
AACTACAATCCTCACGAGTTTGTGAGACTGCTGCATCTGGACAGGGGGGA
GCAGCAGGATCCTCAGGAGTTCCATCGGCTTTTCATGAACAAGATTGAAG
AGTGCTTCGGTGCCTTATCGCCGTCTTCTATAGGTACCACCTCCCTCGCT
TCCTCGACCTCGGGGGAGGGAGGGTCAAGGGGATTGGCAGGAACGGTGAG
GGGGCTGCACAGGGGGAGATTAAAGTATGTGACCACGTGTCAGTGCTGTC
AGACAGCCTCAAGACGGAAGGAAAGCTTCGATGAACTTGAATTGAGCCTG
TCATCCCTCCCGCCCTCCTCCTCGTCCTGGACGATTGCTGGGTGTATAGC
GCGGTACTTGGCGCCCGAGCGCTTGGAGGGGGAAAATCAATACATGTGCG
GTCAATGCCATGATAAACGGGATGCTGAGCGAAGAATTGATTTGACGGAG
CTCCCGCCGGTGTTGAACGTGCATCTTCTTCGATACGTGTATGTGGGGGG
GGAGAAGAAAAAGGTCAGGGAGCTGGTACAGC

Coding sequence (CDS) from alignment at scaffold_19:324862..326943+

>mRNA_7360 ID=mRNA_7360|Name=jgi.p|Nanoce1779_2|598457|organism=Nannochloropsis oceanica|type=CDS|length=1426bp|location=Sequence derived from alignment at scaffold_19:324862..326943+ (Nannochloropsis oceanica)
ATGAGTGCCCGCTCCCGCCGTCCCAGCACCTCGGCTAGGGGCCGCGGGGC
AGGCCCACCCCAGACCGGCCTCGAAGAGCTGGTGCATGGGCAGTTTTCCC
ACCTTCACCCTTACCGCGCCGGAGATCTGATCACCTACCCGCGTTGCATT
TCCTCGGACCACCCGCAAGGCAGTGGTAATTGTGCCAAGAATCCACATTG
TCTGTATGGGCTGGGGGAAAAAAAGGAGGGAATATGGCACACAAGTGGAA
AGAATTCGTTGGTGCAGGCCTTGGGGGAGGACCCGGCCGCGCTGATGAGG
GGATGGAAGGCTCATCCTTCCGCTGCAGCTAGCAAAGGCATGAAAAAAGG
AGGAGGAAATGGTGGAGTAGGAAGGAAGGGGGGAAGTAAGAAAAAAGCGG
GGACTGTGGCTGTGCCGACAACGACATCCGACGTGGCGAAAGGTGAAGGA
GGAGGAGAAGGAGGGAAGAGGAAGAAGCGGGGACGGCCTTCGGGTGCGGG
AGCGGCCGGAGTGAAGAAGAGAAGGAGTAGCAAGGGCACCGAAGATGACG
AGGATGCGGACAGGAAAGAGGAGGACGGGGGTGGAGCAACGGCCATGGCG
GTCGTTCCTTTCCTCCCTCCCCCTCCTTCCTCATCCGCAGCAACAGCAGC
AGCAGCAGCAGCAACAGATTACCGCGCCACCCCCACGGGCCTGACAAATC
TAGGAGCCACCTGTTACTTGAATGTCCTCCTCCAAGCCATGTTCTTCAAC
AAGAGTTTTCGGAAGGCTGTTTACGAATTCCGCCCTCCGTCCTCCTCCTC
CTCTTCCGCGGGAGGCAGCAAGGGGGAAAGGATGGTAGTGATCTTGCAGG
AGCTACAGCGGGTGTTTGCACATATGCATTTGGGGATGGCCCGGAACTAC
AATCCTCACGAGTTTGTGAGACTGCTGCATCTGGACAGGGGGGAGCAGCA
GGATCCTCAGGAGTTCCATCGGCTTTTCATGAACAAGATTGAAGAGTGCT
TCGGTGCCTTATCGCCGTCTTCTATAGGTACCACCTCCCTCGCTTCCTCG
ACCTCGGGGGAGGGAGGGTCAAGGGGATTGGCAGGAACGGTGAGGGGGCT
GCACAGGGGGAGATTAAAGTATGTGACCACGTGTCAGTGCTGTCAGACAG
CCTCAAGACGGAAGGAAAGCTTCGATGAACTTGAATTGAGCCTGTCATCC
CTCCCGCCCTCCTCCTCGTCCTGGACGATTGCTGGGTGTATAGCGCGGTA
CTTGGCGCCCGAGCGCTTGGAGGGGGAAAATCAATACATGTGCGGTCAAT
GCCATGATAAACGGGATGCTGAGCGAAGAATTGATTTGACGGAGCTCCCG
CCGGTGTTGAACGTGCATCTTCTTCGATACGTGTATGTGGGGGGGGAGAA
GAAAAAGGTCAGGGAGCTGGTACAGC

Synonyms

Publications