jgi.p|Nanoce1779_2|672681, mRNA_7358 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672681
Unique NamemRNA_7358
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1324
Alignment locationscaffold_19:320743..322410 -

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Properties
Property NameValue
TranscriptId672767
TrackFilteredModels2
ProteinId672681
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:320743..322410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672681gene_7358Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672681mRNA_7358-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7358CDS_7358Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7358 ID=mRNA_7358|Name=jgi.p|Nanoce1779_2|672681|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp
AAAGACAAGCCCATCGCTGGCGGTTAGGGTGGTTGCGTAGAAGGGAAGAT
GGGCCGTCGTTGGAGGCGAAGAGCACTTGTTACAAGGCCACTCGCGCGCA
TAGCTTGTCCACGCAGAGCAGCTGGTGCATTTCTATGGTGGCGTATGAGG
GATGAGGTGCACATGCTCGAGGTGTGGTGCAAGAAATATGTTTTTGTGTC
GTCGTGTTGGAGGCTGAGCTCAACGGTCGAAGCAAACCTGTGGTGTTGGT
TTTCGGTGATGACGAGTGTGAAGCCAGATAATTACAAAGCCTTGATGGAA
TCATAGAAAATCCCTCTTCTGGACCAGTCACCGGTCGTATTCACGATGCA
GAAGTCCCACGCCCCTTCCATCTATCAGGATTTTTTAGTGCCTGACATGG
CACGCTGTCCTTCCTCCCTTCTTTGCCTCGCTTTCCACTTCACTCTCATC
ATTCGCTCAGCATTCTTCCCGCCCATTCCCGCGAAGGCAACCACTCTATA
CCGAGGTAACCATGAGCATCAGCACCAATCCCGTCGGGAAGGTATGGGTG
GAAAACATGTTCCTGTGGCTGGGTCCCCTCCTCCTGTTCGTCTACAAGAT
GCTGTACGAGTACCTTCCCTTCCCGGCCTTTGCCGTCTGCTTGATCATCC
CTGCCATTTACTTGTACCGCATTACAAAGGATTTGTCTCCCGTAGAAGCT
GCGGATGAGTTGAACAAGAAGCTTCGGCAAGCAGACCAAATGCTTGAGGA
GCTCACAAAGGAGGAAGAGGCGGAGGAGAGGGAGAGGAGGAAGGCCGAGA
GCAAGCAACAGAAGAAGAAGCAACAGAGCGTTTCGCAGCCAGTACAGGTC
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTGCCACTGG
AGGGAAAAAGAATAAAAAGCAGGCGGCAGCGGCTGCACGGGCGGCGGCGG
CAGAAGAGGAGGATGACATGTTGTCGCGCATGGCGCAACAAAGGTCGAAG
AAGGCCACGAGATAGAGAAGGAAAGAATGTGACCCAATGAATAGTAGGGA
AGGAACAAATAAACAAAAAAGAGTGGAGGAAATAGGAGCTAAGGCAATAG
AAAAAGTAAAATTGCTTCCGCAGAGACAAAAAAGCAAGAGAAATAGGAAA
CAGTCATACAAGAGGCAAACACCAAAACCTCCTCCCTCTCTCCCTCCTCC
CCCCTCCCCCCCTTTTCCCTCCTGAGAGTCGTCGTGAAGGTGGAACGCGG
TCCCTCCCTGAAAGCCAACATTAGAGCCGAAGAAAAAAACTTAGAAAGAT
TTGGAAAATATCGGCAACACTGAC
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protein sequence of jgi.p|Nanoce1779_2|672681

>mRNA_7358-protein ID=mRNA_7358-protein|Name=jgi.p|Nanoce1779_2|672681|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MSISTNPVGKVWVENMFLWLGPLLLFVYKMLYEYLPFPAFAVCLIIPAIY
LYRITKDLSPVEAADELNKKLRQADQMLEELTKEEEAEERERRKAESKQQ
KKKQQSVSQPVQVAAAAAAAAAAAAATATGGKKNKKQAAAAARAAAAEEE
DDMLSRMAQQRSKKATR*
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mRNA from alignment at scaffold_19:320743..322410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7358 ID=mRNA_7358|Name=jgi.p|Nanoce1779_2|672681|organism=Nannochloropsis oceanica|type=mRNA|length=1668bp|location=Sequence derived from alignment at scaffold_19:320743..322410- (Nannochloropsis oceanica)
AAAGACAAGCCCATCGCTGGCGGTTAGGGTGGTTGCGTAGAAGGGAAGAT
GGGCCGTCGTTGGAGGCGAAGAGCACTTGTTACAAGGCCACTCGCGCGCA
TAGCTTGTCCACGCAGAGCAGCTGGTGCATTTCTATGGTGGCGTATGAGG
GATGAGGTGCACATGCTCGAGGTGTGGTGCAAGAAATATGTTTTTGTGTC
GTCGTGTTGGAGGCTGAGCTCAACGGTCGAAGCAAACCTGTGGTGTTGGT
TTTCGGTGATGACGAGTGTGAAGCCAGATAATTACAAAGCCTTGATGGAA
TCATAGAAAATCCCTCTTCTGGACCAGTCACCGGTCGTATTCACGATGCA
GAAGTCCCACGCCCCTTCCATCTATCAGGATTTTTTAGTGCCTGACATGG
CACGCTGTCCTTCCTCCCTTCTTTGCCTCGCTTTCCACTTCACTCTCATC
ATTCGCTCAGCATTCTTCCCGCCCATTCCCGCGAAGGCAACCACTCTATA
CCGAGGTAACCATGAGCATCAGCACCAATCCCGTCGGGAAGGTATGGGTG
GAAAACATGTTCCTGTGGCTGGGTCCCCTCCTCCTGTTCGTCTACAAGGT
ACGCTTTGGCCCAGAACCTGTCCGATAGAGCCTCCCCTCCCTCCTTGCCG
TGTCCCTTCCTGTCTGCTCCTCGTACCACCCCCACCACACCTGCTTACGC
CCCATCCTTTGCAAACGAAAAATACGTCCTTTATGTTGTCATTTAACTGC
GTTGCTACTCCATTCCCTCAATCCGGCCGCCCGATCTCACCCTCCCTCCT
CTCTCCCTTTTCCCCCTCCCTCCTTCGTCCACAGATGCTGTACGAGTACC
TTCCCTTCCCGGCCTTTGCCGTCTGCTTGATCATCCCTGCCATTTACTTG
TACCGCATTACAAAGGATTTGTCTCCCGTAGAAGCTGCGGATGAGTTGAA
CAAGAAGCTTCGGCAAGCAGACCAAATGCTTGAGGAGCTCACAAAGGAGG
AAGAGGCGGAGGAGAGGGAGAGGAGGAAGGTAAGAAAGAGGAATGGAGAA
AACAGATAATCGAAGGAAGACGTGAGTTGGGTTGTCAATTTCCTGGATTT
GCGTCTCGCGTTCTGACATGTAATTTCTCTCCTCTAGGCCGAGAGCAAGC
AACAGAAGAAGAAGCAACAGAGCGTTTCGCAGCCAGTACAGGTCGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTGCCACTGGAGGGAA
AAAGAATAAAAAGCAGGCGGCAGCGGCTGCACGGGCGGCGGCGGCAGAAG
AGGAGGATGACATGTTGTCGCGCATGGCGCAACAAAGGTCGAAGAAGGCC
ACGAGATAGAGAAGGAAAGAATGTGACCCAATGAATAGTAGGGAAGGAAC
AAATAAACAAAAAAGAGTGGAGGAAATAGGAGCTAAGGCAATAGAAAAAG
TAAAATTGCTTCCGCAGAGACAAAAAAGCAAGAGAAATAGGAAACAGTCA
TACAAGAGGCAAACACCAAAACCTCCTCCCTCTCTCCCTCCTCCCCCCTC
CCCCCCTTTTCCCTCCTGAGAGTCGTCGTGAAGGTGGAACGCGGTCCCTC
CCTGAAAGCCAACATTAGAGCCGAAGAAAAAAACTTAGAAAGATTTGGAA
AATATCGGCAACACTGAC
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Coding sequence (CDS) from alignment at scaffold_19:320743..322410-

>mRNA_7358 ID=mRNA_7358|Name=jgi.p|Nanoce1779_2|672681|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_19:320743..322410- (Nannochloropsis oceanica)
GCCGAGAGCAAGCAACAGAAGAAGAAGCAACAGAGCGTTTCGCAGCCAGT
ACAGGTCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTG
CCACTGGAGGGAAAAAGAATAAAAAGCAGGCGGCAGCGGCTGCACGGGCG
GCGGCGGCAGAAGAGGAGGATGACATGTTGTCGCGCATGGCGCAACAAAG
GTCGAAGAAGGCCACGAGATAGATGCTGTACGAGTACCTTCCCTTCCCGG
CCTTTGCCGTCTGCTTGATCATCCCTGCCATTTACTTGTACCGCATTACA
AAGGATTTGTCTCCCGTAGAAGCTGCGGATGAGTTGAACAAGAAGCTTCG
GCAAGCAGACCAAATGCTTGAGGAGCTCACAAAGGAGGAAGAGGCGGAGG
AGAGGGAGAGGAGGAAGATGAGCATCAGCACCAATCCCGTCGGGAAGGTA
TGGGTGGAAAACATGTTCCTGTGGCTGGGTCCCCTCCTCCTGTTCGTCTA
CAAGGCCGAGAGCAAGCAACAGAAGAAGAAGCAACAGAGCGTTTCGCAGC
CAGTACAGGTCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACTGCCACTGGAGGGAAAAAGAATAAAAAGCAGGCGGCAGCGGCTGCACG
GGCGGCGGCGGCAGAAGAGGAGGATGACATGTTGTCGCGCATGGCGCAAC
AAAGGTCGAAGAAGGCCACGAGATAGATGCTGTACGAGTACCTTCCCTTC
CCGGCCTTTGCCGTCTGCTTGATCATCCCTGCCATTTACTTGTACCGCAT
TACAAAGGATTTGTCTCCCGTAGAAGCTGCGGATGAGTTGAACAAGAAGC
TTCGGCAAGCAGACCAAATGCTTGAGGAGCTCACAAAGGAGGAAGAGGCG
GAGGAGAGGGAGAGGAGGAAGATGAGCATCAGCACCAATCCCGTCGGGAA
GGTATGGGTGGAAAACATGTTCCTGTGGCTGGGTCCCCTCCTCCTGTTCG
TCTACAAGGCCGAGAGCAAGCAACAGAAGAAGAAGCAACAGAGCGTTTCG
CAGCCAGTACAGGTCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAACTGCCACTGGAGGGAAAAAGAATAAAAAGCAGGCGGCAGCGGCTG
CACGGGCGGCGGCGGCAGAAGAGGAGGATGACATGTTGTCGCGCATGGCG
CAACAAAGGTCGAAGAAGGCCACGAGATAGATGCTGTACGAGTACCTTCC
CTTCCCGGCCTTTGCCGTCTGCTTGATCATCCCTGCCATTTACTTGTACC
GCATTACAAAGGATTTGTCTCCCGTAGAAGCTGCGGATGAGTTGAACAAG
AAGCTTCGGCAAGCAGACCAAATGCTTGAGGAGCTCACAAAGGAGGAAGA
GGCGGAGGAGAGGGAGAGGAGGAAGATGAGCATCAGCACCAATCCCGTCG
GGAAGGTATGGGTGGAAAACATGTTCCTGTGGCTGGGTCCCCTCCTCCTG
TTCGTCTACAAG
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Synonyms
Publications