jgi.p|Nanoce1779_2|598442, mRNA_7357 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598442
Unique Name	mRNA_7357
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1673
Alignment location	scaffold_19:318215..320719 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598528
Track	FilteredModels2
ProteinId	598442

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:318215..320719 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598442	gene_7357	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598442	mRNA_7357-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7357	CDS_7357	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:318215..320719+
coding sequence from alignment at scaffold_19:318215..320719+

mRNA sequence

>mRNA_7357 ID=mRNA_7357|Name=jgi.p|Nanoce1779_2|598442|organism=Nannochloropsis oceanica|type=mRNA|length=1673bp
GTTCACGCTGTTTAGCGGGCCCAACGCTGGCTGGCCGAATCGCTGTCTTG
CCCTCATTCCCGTTGTCGCTTTAACTTCTGGTCCGACCCGAACGATCTCA
ACCCACTCAACCCGAACGAAGACAGGCCTTTCGTCTATCAATGGAGGGTG
TGACGGTGCATGAGGCCGCTGTCCGGCGTTTTCTTCAGCTCCAACTCCAA
CTCCAACCCACGCAGCAACCCAACTTTTGGGAGCGGCCCTTTCGTGACAC
CAGACCCTTTGCGCGTTGCAACCATCCCTACTCTGACAACCCTTTTGAGC
TTGAGTGCAAGACGCTGGCATTTATTTAAACCTAAAATGAGACAATATCA
CCCTTCTTTTCACAACGTACCATCTTAGCACAGGAAGGGTGAGGACACAG
CCGAGCCGAGCTTGTCGTTGTAGTTGTCGTCTCGCCCGCCAAAGGGAGAC
GAGGGGTGCGTTGGCGACAAGTAGCAGCAGCGGGTGGCACGTCCAGTCTA
CCAGGACTCTCCTTCGATCAGTAAAAAAGAAAAGGAAAGGAGGAACTAGT
GGTGAAGCCAAAGGAATCGATAGCGTTGATCCAACGGGTTGAAGGCATAG
GCTTAAGACAACCGAGCCAGTCGAGCATTTACCCCCGGGGTTGACCGCAC
GAGAACGATGGCGTACGTAATCAAAACTGAAGACCATACCGTCCCGGGCT
TCCGGTGGGTAAGCCTTAAAAGGCTACAGTACTGTGATGCGAAGGGCCAT
AAACGCACGTGGGAAATGGCAGAGAGAATCACGAGACGGACGCCGAGTGA
AGGACCGCCGCCCGCCAATGGAGTAGGGGTTGTCGCTATTATCTCGACGG
CACTGGAAAAGGACAATGATCACATTGTATTAGTGTCTCAGTTCAGACCG
CCGGTGGGGAAAGAGGTATTAGAACTGCCGGCAGGTCTAGTAGATGATGG
AGAGGATGAAGCCACCGCCGCCATCCGCGAGCTCCGAGAAGAGACCGGCT
TTGAAGGCATTGTCACGCACGTCTCGCCTGTCATCTACTCCGACCCGGGG
CTCAGCAACGCCTCCATACGCTATGTCTTTATGAAGATAGACGGTGATTT
AGGGAGTAACCAGCAGCCTGTCGCCATTCCGGATGACGGCGAGATAATTA
CCGTCCATCGCATCCCTGTCAAAAGATTACTTAGCGAGGTAGAGACGTTC
CGAGACAAGGGTTTGGAGATTGATGCCCGTCTCTACGGTCTTGCTCTCGG
CCTGCAATACGGCGATGTAAAGCAGTATAACCCTCCGGGCAGCCATTCCT
CCTCCTGGACCTGGACTTTCGCTTCTGGAGTTGCCGCGTTGTTGCTTTAC
CGGTATATGAAAGGAGCGGGTGGGTAGAGCCCCTTCTTCCTCCTCTCCCT
TCCATTTCCCCTCCATTTATCCCACCCTCTTCGAATAAAAGGGAGGGAGA
GGGGAAGGGATGGGTGGAAGGTAAGAGGGTAGCAGGGTCCGTCGCGGTCA
TGGAGGGATGGCAGATGTAGGGATGGAAATCGAGGCGTGCCAATGTCATA
TACAAATATTATCAAATGAACGAGTGAGGGAGAGGGCAAAAGGCAAGAAC
GAAGGGGGGCTAAGATGAAACAGGGATTGAGACTAGAGGGAGAAAAGAAA
CAACAAATGATGAATCTCCTCTG

protein sequence of jgi.p|Nanoce1779_2|598442

>mRNA_7357-protein ID=mRNA_7357-protein|Name=jgi.p|Nanoce1779_2|598442|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MAYVIKTEDHTVPGFRWVSLKRLQYCDAKGHKRTWEMAERITRRTPSEGP
PPANGVGVVAIISTALEKDNDHIVLVSQFRPPVGKEVLELPAGLVDDGED
EATAAIRELREETGFEGIVTHVSPVIYSDPGLSNASIRYVFMKIDGDLGS
NQQPVAIPDDGEIITVHRIPVKRLLSEVETFRDKGLEIDARLYGLALGLQ
YGDVKQYNPPGSHSSSWTWTFASGVAALLLYRYMKGAGG*

mRNA from alignment at scaffold_19:318215..320719+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7357 ID=mRNA_7357|Name=jgi.p|Nanoce1779_2|598442|organism=Nannochloropsis oceanica|type=mRNA|length=2505bp|location=Sequence derived from alignment at scaffold_19:318215..320719+ (Nannochloropsis oceanica)
GTTCACGCTGTTTAGCGGGCCCAACGCTGGCTGGCCGAATCGCTGTCTTG
CCCTCATTCCCGTTGTCGCTTTAACTTCTGGTCCGACCCGAACGATCTCA
ACCCACTCAACCCGAACGAAGACAGGCCTTTCGTCTATCAATGGAGGGTG
TGACGGTGCATGAGGCCGCTGTCCGGCGTTTTCTTCAGCTCCAACTCCAA
CTCCAACCCACGCAGCAACCCAACTTTTGGGAGCGGCCCTTTCGTGACAC
CAGACCCTTTGCGCGTTGCAACCATCCCTACTCTGACAACCCTTTTGAGC
TTGAGTGCAAGACGCTGGCATTTATTTAAACCTAAAATGAGACAATATCA
CCCTTCTTTTCACAACGTACCATCTTAGCACAGGAAGGGTGAGGACACAG
CCGAGCCGAGCTTGTCGTTGTAGTTGTCGTCTCGCCCGCCAAAGGGAGAC
GAGGGGTGCGTTGGCGACAAGTAGCAGCAGCGGGTGGCACGTCCAGTCTA
CCAGGACTCTCCTTCGATCAGTAAAAAAGAAAAGGAAAGGAGGAACTAGT
GGTGAAGCCAAAGGAATCGATAGCGTTGATCCAACGGGTTGAAGGCATAG
GCTTAAGACAACCGAGCCAGTCGAGCATTTACCCCCGGGGTTGACCGCAC
GAGAACGATGGCGTACGTAATCAAAACTGAAGACCATACCGTCCCGGGCT
TCCGGTGGGTAAGCCTTAAAAGGCTACAGTACTGTGATGCGAAGGGCCAT
AAACGCACGTGGGAAATGGCAGAGAGAATCACGAGACGGACGCCGAGTGA
AGGACCGCCGCCCGCCAATGGAGTAGGGGTTGTCGCTATTATCTCGACGG
CACTGGAAAAGGACAATGATCACATTGTATTAGGTGAGGAGGGAGGGAGG
GACGGAGGGAGGGAGGAGGGGCTGTGGGAGGGAGACATATACACGCCAAA
GCAGACACATTTTCCCATCTTGACCATTTCCTTTCCTCCCTTCCTCCTCC
TTCCCTCCCCTCCCCTCATGTGAACAGTGTCTCAGTTCAGACCGCCGGTG
GGGAAAGAGGTATTAGAACTGCCGGCAGGTCTAGTAGATGATGGAGAGGT
ATGTATTTGTATGAGGAGAGAGGGGAGGGAGGGTAAGGTAGAGTGACTGC
AAGAAAACGATAATAGATTGTTCATTTCATTTGGCTTTGCGTACATACGT
AAACCAAGCGTATCCATGATTTCCTCTCTCCCGCACGTCGCTTCGGTGTT
CATAAAATATAAACGTAGGATGAAGCCACCGCCGCCATCCGCGAGCTCCG
AGAAGAGACCGGCTTTGAAGGCATTGTCACGCACGTCTCGCCTGTCATCT
ACTCCGACCCGGGGCTCAGCAACGCCTCCATACGCTATGTCTTTATGAAG
ATAGACGGTGATTTAGGGAGTAACCAGCAGCCTGTCGCCATTCCGGATGA
CGGCGAGATAATTACCGTCCATCGCATCCCTGTCAAAAGGTATGTACGTC
ACACCTTCTCCTTTTCTTCCCTTCCTCCGTCCCTCCCTCCCCAGGCAAGC
ATCAATGCTTCGATGCGATGGTTGTTTATCAAACAAAATGGGGATAAAGG
AAGGAACGAGCAGCGCTTCGCTGTTTCTAATTATGGCGATGTTATTATTA
CCATCACGCGGAGGGGGCTTCTAAAGAGTTATTTCAGTCTTTTCTATGTT
CCTTCTTCCATTTCTAAGCTCTCTTCTTTTTTGGTTTACCATGTTATTGA
CGGATGGATTGACTTATATATCTAATTGTTTTTCCTTCTTATACATTGTG
TATTGATATATTCGAAAATGATAATTATATGTTTATTCATTTTACCTTCT
TTATCTTACTTTAATTTATTTTTATTCATTTATTATTTTCCATTTTATTA
ATTCTCCTATTTTTCCTTTTATTCAATTACATTATGTATTTTTATTCATT
AATAAGCATTCACTCATTCATCCATCTACATATTTATTAACTCGGCTGTT
CAAACAGATTACTTAGCGAGGTAGAGACGTTCCGAGACAAGGGTTTGGAG
ATTGATGCCCGTCTCTACGGTCTTGCTCTCGGCCTGCAATACGGCGATGT
AAAGCAGTATAACCCTCCGGGCAGCCATTCCTCCTCCTGGACCTGGACTT
TCGCTTCTGGAGTTGCCGCGTTGTTGCTTTACCGGTATATGAAAGGAGCG
GGTGGGTAGAGCCCCTTCTTCCTCCTCTCCCTTCCATTTCCCCTCCATTT
ATCCCACCCTCTTCGAATAAAAGGGAGGGAGAGGGGAAGGGATGGGTGGA
AGGTAAGAGGGTAGCAGGGTCCGTCGCGGTCATGGAGGGATGGCAGATGT
AGGGATGGAAATCGAGGCGTGCCAATGTCATATACAAATATTATCAAATG
AACGAGTGAGGGAGAGGGCAAAAGGCAAGAACGAAGGGGGGCTAAGATGA
AACAGGGATTGAGACTAGAGGGAGAAAAGAAACAACAAATGATGAATCTC
CTCTG

Coding sequence (CDS) from alignment at scaffold_19:318215..320719+

>mRNA_7357 ID=mRNA_7357|Name=jgi.p|Nanoce1779_2|598442|organism=Nannochloropsis oceanica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_19:318215..320719+ (Nannochloropsis oceanica)
ATGGCGTACGTAATCAAAACTGAAGACCATACCGTCCCGGGCTTCCGGTG
GGTAAGCCTTAAAAGGCTACAGTACTGTGATGCGAAGGGCCATAAACGCA
CGTGGGAAATGGCAGAGAGAATCACGAGACGGACGCCGAGTGAAGGACCG
CCGCCCGCCAATGGAGTAGGGGTTGTCGCTATTATCTCGACGGCACTGGA
AAAGGACAATGATCACATTGTATTAGTGTCTCAGTTCAGACCGCCGGTGG
GGAAAGAGGTATTAGAACTGCCGGCAGGTCTAGTAGATGATGGAGAGGAT
GAAGCCACCGCCGCCATCCGCGAGCTCCGAGAAGAGACCGGCTTTGAAGG
CATTGTCACGCACGTCTCGCCTGTCATCTACTCCGACCCGGGGCTCAGCA
ACGCCTCCATACGCTATGTCTTTATGAAGATAGACGGTGATTTAGGGAGT
AACCAGCAGCCTGTCGCCATTCCGGATGACGGCGAGATAATTACCGTCCA
TCGCATCCCTGTCAAAAGATTACTTAGCGAGGTAGAGACGTTCCGAGACA
AGGGTTTGGAGATTGATGCCCGTCTCTACGGTCTTGCTCTCGGCCTGCAA
TACGGCGATGTAAAGCAGTATAACCCTCCGGGCAGCCATTCCTCCTCCTG
GACCTGGACTTTCGCTTCTGGAGTTGCCGCGTTGTTGCTTTACCGGTATA
TGAAAGGAGCGGGTGGGTAGATGGCGTACGTAATCAAAACTGAAGACCAT
ACCGTCCCGGGCTTCCGGTGGGTAAGCCTTAAAAGGCTACAGTACTGTGA
TGCGAAGGGCCATAAACGCACGTGGGAAATGGCAGAGAGAATCACGAGAC
GGACGCCGAGTGAAGGACCGCCGCCCGCCAATGGAGTAGGGGTTGTCGCT
ATTATCTCGACGGCACTGGAAAAGGACAATGATCACATTGTATTAGTGTC
TCAGTTCAGACCGCCGGTGGGGAAAGAGGTATTAGAACTGCCGGCAGGTC
TAGTAGATGATGGAGAGGATGAAGCCACCGCCGCCATCCGCGAGCTCCGA
GAAGAGACCGGCTTTGAAGGCATTGTCACGCACGTCTCGCCTGTCATCTA
CTCCGACCCGGGGCTCAGCAACGCCTCCATACGCTATGTCTTTATGAAGA
TAGACGGTGATTTAGGGAGTAACCAGCAGCCTGTCGCCATTCCGGATGAC
GGCGAGATAATTACCGTCCATCGCATCCCTGTCAAAAGATTACTTAGCGA
GGTAGAGACGTTCCGAGACAAGGGTTTGGAGATTGATGCCCGTCTCTACG
GTCTTGCTCTCGGCCTGCAATACGGCGATGTAAAGCAGTATAACCCTCCG
GGCAGCCATTCCTCCTCCTGGACCTGGACTTTCGCTTCTGGAGTTGCCGC
GTTGTTGCTTTACCGGTATATGAAAGGAGCGGGTGGGTAGATGGCGTACG
TAATCAAAACTGAAGACCATACCGTCCCGGGCTTCCGGTGGGTAAGCCTT
AAAAGGCTACAGTACTGTGATGCGAAGGGCCATAAACGCACGTGGGAAAT
GGCAGAGAGAATCACGAGACGGACGCCGAGTGAAGGACCGCCGCCCGCCA
ATGGAGTAGGGGTTGTCGCTATTATCTCGACGGCACTGGAAAAGGACAAT
GATCACATTGTATTAGTGTCTCAGTTCAGACCGCCGGTGGGGAAAGAGGT
ATTAGAACTGCCGGCAGGTCTAGTAGATGATGGAGAGGATGAAGCCACCG
CCGCCATCCGCGAGCTCCGAGAAGAGACCGGCTTTGAAGGCATTGTCACG
CACGTCTCGCCTGTCATCTACTCCGACCCGGGGCTCAGCAACGCCTCCAT
ACGCTATGTCTTTATGAAGATAGACGGTGATTTAGGGAGTAACCAGCAGC
CTGTCGCCATTCCGGATGACGGCGAGATAATTACCGTCCATCGCATCCCT
GTCAAAAGATTACTTAGCGAGGTAGAGACGTTCCGAGACAAGGGTTTGGA
GATTGATGCCCGTCTCTACGGTCTTGCTCTCGGCCTGCAATACGGCGATG
TAAAGCAGTATAACCCTCCGGGCAGCCATTCCTCCTCCTGGACCTGGACT
TTCGCTTCTGGAGTTGCCGCGTTGTTGCTTTACCGGTATATGAAAGGAGC
GGGTGGGTAGATGGCGTACGTAATCAAAACTGAAGACCATACCGTCCCGG
GCTTCCGGTGGGTAAGCCTTAAAAGGCTACAGTACTGTGATGCGAAGGGC
CATAAACGCACGTGGGAAATGGCAGAGAGAATCACGAGACGGACGCCGAG
TGAAGGACCGCCGCCCGCCAATGGAGTAGGGGTTGTCGCTATTATCTCGA
CGGCACTGGAAAAGGACAATGATCACATTGTATTAGTGTCTCAGTTCAGA
CCGCCGGTGGGGAAAGAGGTATTAGAACTGCCGGCAGGTCTAGTAGATGA
TGGAGAGGATGAAGCCACCGCCGCCATCCGCGAGCTCCGAGAAGAGACCG
GCTTTGAAGGCATTGTCACGCACGTCTCGCCTGTCATCTACTCCGACCCG
GGGCTCAGCAACGCCTCCATACGCTATGTCTTTATGAAGATAGACGGTGA
TTTAGGGAGTAACCAGCAGCCTGTCGCCATTCCGGATGACGGCGAGATAA
TTACCGTCCATCGCATCCCTGTCAAAAGATTACTTAGCGAGGTAGAGACG
TTCCGAGACAAGGGTTTGGAGATTGATGCCCGTCTCTACGGTCTTGCTCT
CGGCCTGCAATACGGCGATGTAAAGCAGTATAACCCTCCGGGCAGCCATT
CCTCCTCCTGGACCTGGACTTTCGCTTCTGGAGTTGCCGCGTTGTTGCTT
TACCGGTATATGAAAGGAGCGGGTGGGTAG

Synonyms

Publications