jgi.p|Nanoce1779_2|641075, mRNA_7353 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|641075
Unique NamemRNA_7353
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length603
Alignment locationscaffold_19:305557..306159 -

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Properties
Property NameValue
TranscriptId641161
TrackFilteredModels2
ProteinId641075
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:305557..306159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641075gene_7353Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7353CDS_7353Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641075mRNA_7353-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7353 ID=mRNA_7353|Name=jgi.p|Nanoce1779_2|641075|organism=Nannochloropsis oceanica|type=mRNA|length=603bp
ATGGACGATGGTGGCGGTATGGATATGATGGGTTCTATGAGCATGACCTT
TGCCTCATTCTCAACCTACAAGATGCAAGTGGTGTGGGGCTGGTGGGACG
TCAAAACGAAGGGGCAGTACGTTGCTACCCTCCTTGCCTTGGCCGCAGCC
GTGGTGGTGCACCGGTGGCTCGTCAAGCTCGAAGTCGCTTACGTGAAGAA
GACCCTGGTTCAGGCGACGGAGGGTGGTGGCGCTGGTCGTGGAGGCGGCG
GTGGTGGGTTTGTAGGAGGACTGGGCATCAACACTACCACCACTGCTAAT
ATGGAGCTCGGGGAGTCTCTCTTGATGGGCGGAGGTGGAACGGGCGCCGG
TCGGACCCGTCTTCATGGGGCGGTGGTCAAGAGCGTGCCTTTCAGTAAGC
GGTTGATGCATGCCGCGTTTTCCGGGTTGTTATACCTGTATGCCTTGCTT
TTGATGTTGGCAGCCATGACTTACAATCCTGGGCTCTTTTTGGCTCTAGG
GGTGGGATACATTGTAGGGGAGCTTTGTTTTTCGACTACATTTGATTTGG
TTGGAGTTGGGGGTATGGTGATGCGGGGGAAGGGAGGAGCGTGTTGCGAG
TGA
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protein sequence of jgi.p|Nanoce1779_2|641075

>mRNA_7353-protein ID=mRNA_7353-protein|Name=jgi.p|Nanoce1779_2|641075|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MDDGGGMDMMGSMSMTFASFSTYKMQVVWGWWDVKTKGQYVATLLALAAA
VVVHRWLVKLEVAYVKKTLVQATEGGGAGRGGGGGGFVGGLGINTTTTAN
MELGESLLMGGGGTGAGRTRLHGAVVKSVPFSKRLMHAAFSGLLYLYALL
LMLAAMTYNPGLFLALGVGYIVGELCFSTTFDLVGVGGMVMRGKGGACCE
*
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mRNA from alignment at scaffold_19:305557..306159-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7353 ID=mRNA_7353|Name=jgi.p|Nanoce1779_2|641075|organism=Nannochloropsis oceanica|type=mRNA|length=603bp|location=Sequence derived from alignment at scaffold_19:305557..306159- (Nannochloropsis oceanica)
ATGGACGATGGTGGCGGTATGGATATGATGGGTTCTATGAGCATGACCTT
TGCCTCATTCTCAACCTACAAGATGCAAGTGGTGTGGGGCTGGTGGGACG
TCAAAACGAAGGGGCAGTACGTTGCTACCCTCCTTGCCTTGGCCGCAGCC
GTGGTGGTGCACCGGTGGCTCGTCAAGCTCGAAGTCGCTTACGTGAAGAA
GACCCTGGTTCAGGCGACGGAGGGTGGTGGCGCTGGTCGTGGAGGCGGCG
GTGGTGGGTTTGTAGGAGGACTGGGCATCAACACTACCACCACTGCTAAT
ATGGAGCTCGGGGAGTCTCTCTTGATGGGCGGAGGTGGAACGGGCGCCGG
TCGGACCCGTCTTCATGGGGCGGTGGTCAAGAGCGTGCCTTTCAGTAAGC
GGTTGATGCATGCCGCGTTTTCCGGGTTGTTATACCTGTATGCCTTGCTT
TTGATGTTGGCAGCCATGACTTACAATCCTGGGCTCTTTTTGGCTCTAGG
GGTGGGATACATTGTAGGGGAGCTTTGTTTTTCGACTACATTTGATTTGG
TTGGAGTTGGGGGTATGGTGATGCGGGGGAAGGGAGGAGCGTGTTGCGAG
TGA
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Coding sequence (CDS) from alignment at scaffold_19:305557..306159-

>mRNA_7353 ID=mRNA_7353|Name=jgi.p|Nanoce1779_2|641075|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_19:305557..306159- (Nannochloropsis oceanica)
ATGGACGATGGTGGCGGTATGGATATGATGGGTTCTATGAGCATGACCTT
TGCCTCATTCTCAACCTACAAGATGCAAGTGGTGTGGGGCTGGTGGGACG
TCAAAACGAAGGGGCAGTACGTTGCTACCCTCCTTGCCTTGGCCGCAGCC
GTGGTGGTGCACCGGTGGCTCGTCAAGCTCGAAGTCGCTTACGTGAAGAA
GACCCTGGTTCAGGCGACGGAGGGTGGTGGCGCTGGTCGTGGAGGCGGCG
GTGGTGGGTTTGTAGGAGGACTGGGCATCAACACTACCACCACTGCTAAT
ATGGAGCTCGGGGAGTCTCTCTTGATGGGCGGAGGTGGAACGGGCGCCGG
TCGGACCCGTCTTCATGGGGCGGTGGTCAAGAGCGTGCCTTTCAGTAAGC
GGTTGATGCATGCCGCGTTTTCCGGGTTGTTATACCTGTATGCCTTGCTT
TTGATGTTGGCAGCCATGACTTACAATCCTGGGCTCTTTTTGGCTCTAGG
GGTGGGATACATTGTAGGGGAGCTTTGTTTTTCGACTACATTTGATTTGG
TTGGAGTTGGGGGTATGGTGATGCGGGGGAAGGGAGGAGCGTGTTGCGAG
TGA
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Synonyms
Publications