jgi.p|Nanoce1779_2|632203, mRNA_7349 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632203
Unique Name	mRNA_7349
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1756
Alignment location	scaffold_19:290567..293129 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632289
Track	FilteredModels2
ProteinId	632203

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:290567..293129 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632203	gene_7349	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632203	mRNA_7349-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7349	CDS_7349	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:290567..293129+
coding sequence from alignment at scaffold_19:290567..293129+

mRNA sequence

>mRNA_7349 ID=mRNA_7349|Name=jgi.p|Nanoce1779_2|632203|organism=Nannochloropsis oceanica|type=mRNA|length=1756bp
GAGGGAGGGAAGGAGGGAGGGAGGGAGGCGCAGTAGCAGGAAGACGTGGG
ACATTCACGGTCAGGAGTGAAGACGCAGAAGACGCAGGAGGAGGAGGAGG
AGGAGTTGGAGGAGGAGGAGGGGTGCAACAGAAGCAGGGTCAGCAGGGAG
ACCAGGAGCAAGCACCCGCCACTCCCCTTCCTTCCGCCTGTCCGCCCATG
GCGTCGCTTACATCCACCGCCCGTCCTCCCTCCACCCCTCAGTCGCAACA
ACAGCAACGGCAATTCCCACAGCCCCATTCTCCTCTCTCCTCCCAGCAGC
ATCAGCAGCAGCAGCCATCGAACACACTGTACCCCTCATCTTCCTCCTCC
CCTGCCTCCTTCACCGCCCCCTCGCTCTCCTCCTTCTATCCCACCACCAC
CCAACGCCACCTCCAACCCGGCGCACCTCAAGGGAAGGACGAGGGAGGGA
AGGATGGATCGAATGAAGACGTGCTCATCCAAAACGAGTGGATCACGGGC
GCGACCTCCTCGGTCGGGACCTGCCTCTCCATGTGCCCCCCTGACGAAGT
CCTCATGCGGGAGTCCAACCGCAACAAGCTGGAAGACCGGCCCTCCCTCC
CCCCCTCCCTGTCGATGATCAAGGACTTGGAGAGGAACCCTCCAGCTGAC
TACCCCATGTCCAAAATCCGCCCCGTGGAATGGCTCTTGAAGTCAGTCGA
ATACATGGAGGACGAACTCATGGACAAGGGGAGGGAAGGGAGGGAGGGCG
GGAGGGCGGGAGGGCGGTTGCTGGATTCGGATCGGAGTTGGGGTCAGCAC
CACCTCAACTACAACCCCGACTTTGTCCGCGACGACGGCAAGCAAAACAC
GGAACAGCTGACCAACACCCTCGTGCCCCTGAAGGAGAACTACAGCTACG
CCCACATGCTCCACCAGCCAAGCCTCTGCAAGCACGAGGCAGAATTCCAT
TCATATTCGGTGCTTTTGACGGGAGACTTAAAACAGGCCCTGAAGGGCGG
GCCTGGCGTCTCCTCCTCCCCCGAAGTCCGTCTGGCGATCGACGTCTTGG
GCAGCGTCGAAACGGACAATTTCGCCCGTTTTTTCGCCCTTTTACGCAAG
GCACCTTATTTGATGGCCTGCCTGATGGCCAAGCATGTGGAGAGGATGCG
GGATAAAGCCCTGGAGGTGTGGGCGCGCGCCTTCAACCCGACCAAGCAGA
AGGCCACGTCTTTCTCACTGGAAGAGATATGCTACGCCTTGTGCCTGCAG
GGTGAGGAGGAATTGCGGGAATTGGCACAGAGCCGACCATGGCTGGAGGT
CGTCCAGATGGAGGGGGAGGGAGGAAAGGCAGGAAGTGCGGTGAGGGTGA
CGCTGCGGCGGGCAACGGCAGCAGACAGACAGCGAGGTCTACTGATGATG
ACCCCCTCACTGAGGGGCACTGATGGTGAGGAGCTGGATGAGGAGAAACA
GGCTGCACAGAAGAGGAAAGCGCGCGCCGCCTTGATCCTCAAGAGCTCGT
TTCCCTACGTCCCCTTTATTGAGGCGAAGGCGGAGGGGCAGCTGCTCCTG
CCGCTGCTCCTCCTACAGTACGTACAGGAACAGCAGCCGCAACAACAATA
GCAGCTCCTCCCTCTCTCCCTCCCTCTTCCTTGTTCCCTCCTTTGGCCAT
GCCACCTGCTATCCAACTGCCGCAAGCAGCAGCAGTAGCAGCAGGAAGAG
GCGGAGAAGAGGGAGGGGAGCGGGGAAGGGGTGGAGGTGGGGGAGGACTG
TTCGGA

protein sequence of jgi.p|Nanoce1779_2|632203

>mRNA_7349-protein ID=mRNA_7349-protein|Name=jgi.p|Nanoce1779_2|632203|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MASLTSTARPPSTPQSQQQQRQFPQPHSPLSSQQHQQQQPSNTLYPSSSS
SPASFTAPSLSSFYPTTTQRHLQPGAPQGKDEGGKDGSNEDVLIQNEWIT
GATSSVGTCLSMCPPDEVLMRESNRNKLEDRPSLPPSLSMIKDLERNPPA
DYPMSKIRPVEWLLKSVEYMEDELMDKGREGREGGRAGGRLLDSDRSWGQ
HHLNYNPDFVRDDGKQNTEQLTNTLVPLKENYSYAHMLHQPSLCKHEAEF
HSYSVLLTGDLKQALKGGPGVSSSPEVRLAIDVLGSVETDNFARFFALLR
KAPYLMACLMAKHVERMRDKALEVWARAFNPTKQKATSFSLEEICYALCL
QGEEELRELAQSRPWLEVVQMEGEGGKAGSAVRVTLRRATAADRQRGLLM
MTPSLRGTDGEELDEEKQAAQKRKARAALILKSSFPYVPFIEAKAEGQLL
LPLLLLQYVQEQQPQQQ*

mRNA from alignment at scaffold_19:290567..293129+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7349 ID=mRNA_7349|Name=jgi.p|Nanoce1779_2|632203|organism=Nannochloropsis oceanica|type=mRNA|length=2563bp|location=Sequence derived from alignment at scaffold_19:290567..293129+ (Nannochloropsis oceanica)
GAGGGAGGGAAGGAGGGAGGGAGGGAGGCGCAGTAGCAGGAAGACGTGGG
ACATTCACGGTCAGGAGTGAAGACGCAGAAGACGCAGGAGGAGGAGGAGG
AGGAGTTGGAGGAGGAGGAGGGGTGCAACAGAAGCAGGGTCAGCAGGGAG
ACCAGGAGCAAGCACCCGCCACTCCCCTTCCTTCCGCCTGTCCGCCCATG
GCGTCGCTTACATCCACCGCCCGTCCTCCCTCCACCCCTCAGTCGCAACA
ACAGCAACGGCAATTCCCACAGCCCCATTCTCCTCTCTCCTCCCAGCAGC
ATCAGCAGCAGCAGCCATCGAACACACTGTACCCCTCATCTTCCTCCTCC
CCTGCCTCCTTCACCGCCCCCTCGCTCTCCTCCTTCTATCCCACCACCAC
CCAACGCCACCTCCAACCCGGCGCACCTCAAGGGAAGGACGAGGGAGGGA
AGGATGGATCGAATGAAGACGTGCTCATCCAAAACGAGTGGATCACGGGC
GCGACCTCCTCGGTCGGGACCTGCCTCTCCATGTGCCCCCCTGACGAAGT
CCTCATGCGGGAGTCCAACCGCAACAAGCTGGAAGACCGGCCCTCCCTCC
CCCCCTCCCTGTCGATGATCAAGGACTTGGAGAGGAACCCTCCAGCTGAC
TACCCCATGTCCAAAATCCGCCCCGTGGAATGGCTCTTGAAGTCAGTCGA
ATACATGGAGGACGAACTCATGGACAAGGGGAGGGAAGGGAGGGAGGGCG
GGAGGGCGGGAGGGCGGTTGCTGGATTCGGATCGGAGTTGGGGTCAGGTG
ACGGTGCTTGAGAATTACAAATTTCACTTTCAGAGGCTGCGGATGGTGGC
AAAGGAGTTGATCATGCAGGTAGGGAGGCAAGGGGGAAGAGAGGGAAGGG
GGAAGAGAGGGAAGGGGGAGGAAAGGAGGGCGGGAGGGAAGGGATACTCT
GCTTGTCTTGTGGCACAATTTTTCTTCCATCTCCCTTCCTTTCCATCCCT
CTTTCCCTCCCTCCTCTGTAGAATTTCTCCTACGGCGGCAACATCTCCAC
CACGAGCATCCAGGTGATCGAACGGCTGACCCGCTACTGGATCATCTACC
AGCACCACCTCAACTACAACCCCGACTTTGTCCGCGACGACGGCAAGCAA
AACACGGAACAGCTGACCAACACCCTCGTGCCCCTGAAGGAGAACTACAG
CTACGCCCACATGCTCCACCAGCCAAGCCTCTGCAAGCACGAGGCAGAAT
TCCATTCATATTCGGTGCTTTTGACGGGAGACTTAAAACAGGCCCTGAAG
GGCGGGCCTGGCGTCTCCTCCTCCCCCGAAGTCCGTCTGGCGATCGACGT
CTTGGGCAGCGTCGAAACGGACAATTTCGCCCGTTTTTTCGCCCTTTTAC
GCAAGGCACCTTATTTGATGGCCTGCCTGATGGCCAAGCATGTGGAGAGG
ATGCGGGATAAAGCCCTGGAGGTGTGGGCGCGCGCCTTCAACCCGACCAA
GCAGAAGGCCACGTCTTTCTCACTGGAAGAGATATGCTACGCCTTGTGCC
TGCAGGGTGAGGAGGAATTGCGGGAATTGGCACAGAGCCGACCATGGCTG
GAGGTCGTCCAGATGGAGGGGGAGGGAGGAAAGGCAGGAAGTGCGGTGAG
GGTGACGCTGCGGCGGGCAACGGCAGCAGACAGACAGCGAGGTCTACTGA
TGATGACCCCCTCACTGAGGGGCACTGATGGTGAGGAGCTGGATGAGGAG
AAACAGGCTGCACAGAAGAGGAAAGCGCGCGCCGCCTTGATCCTCAAGAG
CTCGTTTCCCTACGTCCCCTTTATTGAGGCGAAGGCGGAGGGGGTGAGAT
TCCGGGATCTTACCCGAGGGTGGCAGGGGTCTTTGTCCCTATCGACGTCA
CAAGAGAGGCAGATCTCTGCTGCAGCTGCTACTGGTGCTGCTGTCACTTC
TACGATCCGGCCTCCCTTCCCTTCCTACTCCCCGGTGGCATCGACGGGTG
CGCAGGAGAAGAAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGGA
GGAGCGGCATCAAGAATGGCAGCAGAGTCAGCAGCAGCTACAGCAAGAAA
GGAAAGAGCAGCGATGGAGACAGCAGCAGCAGCAATAGATCAAAAGAAGA
AAAAGAAGAAGACAGAGGAAGAGGAGAAAGAGAGGAGGCAACGGGCTACC
CCTCCACTCGCCCCCACCTCCGTACCTTCTGCGATAGATGCTGCTGCTCC
TGCTACACCCACACCCTCCTTCCCTCCTTCCACGACGATTACCACTGAGG
ATAATGACCGTGCCCGCAAGCGTCGCCTTCCTTCCACTCCTGCAGCAGCT
GCTCCTGCCGCTGCTCCTCCTACAGTACGTACAGGAACAGCAGCCGCAAC
AACAATAGCAGCTCCTCCCTCTCTCCCTCCCTCTTCCTTGTTCCCTCCTT
TGGCCATGCCACCTGCTATCCAACTGCCGCAAGCAGCAGCAGTAGCAGCA
GGAAGAGGCGGAGAAGAGGGAGGGGAGCGGGGAAGGGGTGGAGGTGGGGG
AGGACTGTTCGGA

Coding sequence (CDS) from alignment at scaffold_19:290567..293129+

>mRNA_7349 ID=mRNA_7349|Name=jgi.p|Nanoce1779_2|632203|organism=Nannochloropsis oceanica|type=CDS|length=4212bp|location=Sequence derived from alignment at scaffold_19:290567..293129+ (Nannochloropsis oceanica)
ATGGCGTCGCTTACATCCACCGCCCGTCCTCCCTCCACCCCTCAGTCGCA
ACAACAGCAACGGCAATTCCCACAGCCCCATTCTCCTCTCTCCTCCCAGC
AGCATCAGCAGCAGCAGCCATCGAACACACTGTACCCCTCATCTTCCTCC
TCCCCTGCCTCCTTCACCGCCCCCTCGCTCTCCTCCTTCTATCCCACCAC
CACCCAACGCCACCTCCAACCCGGCGCACCTCAAGGGAAGGACGAGGGAG
GGAAGGATGGATCGAATGAAGACGTGCTCATCCAAAACGAGTGGATCACG
GGCGCGACCTCCTCGGTCGGGACCTGCCTCTCCATGTGCCCCCCTGACGA
AGTCCTCATGCGGGAGTCCAACCGCAACAAGCTGGAAGACCGGCCCTCCC
TCCCCCCCTCCCTGTCGATGATCAAGGACTTGGAGAGGAACCCTCCAGCT
GACTACCCCATGTCCAAAATCCGCCCCGTGGAATGGCTCTTGAAGTCAGT
CGAATACATGGAGGACGAACTCATGGACAAGGGGAGGGAAGGGAGGGAGG
GCGGGAGGGCGGGAGGGCGGTTGCTGGATTCGGATCGGAGTTGGGGTCAG
CACCACCTCAACTACAACCCCGACTTTGTCCGCGACGACGGCAAGCAAAA
CACGGAACAGCTGACCAACACCCTCGTGCCCCTGAAGGAGAACTACAGCT
ACGCCCACATGCTCCACCAGCCAAGCCTCTGCAAGCACGAGGCAGAATTC
CATTCATATTCGGTGCTTTTGACGGGAGACTTAAAACAGGCCCTGAAGGG
CGGGCCTGGCGTCTCCTCCTCCCCCGAAGTCCGTCTGGCGATCGACGTCT
TGGGCAGCGTCGAAACGGACAATTTCGCCCGTTTTTTCGCCCTTTTACGC
AAGGCACCTTATTTGATGGCCTGCCTGATGGCCAAGCATGTGGAGAGGAT
GCGGGATAAAGCCCTGGAGGTGTGGGCGCGCGCCTTCAACCCGACCAAGC
AGAAGGCCACGTCTTTCTCACTGGAAGAGATATGCTACGCCTTGTGCCTG
CAGGGTGAGGAGGAATTGCGGGAATTGGCACAGAGCCGACCATGGCTGGA
GGTCGTCCAGATGGAGGGGGAGGGAGGAAAGGCAGGAAGTGCGGTGAGGG
TGACGCTGCGGCGGGCAACGGCAGCAGACAGACAGCGAGGTCTACTGATG
ATGACCCCCTCACTGAGGGGCACTGATGGTGAGGAGCTGGATGAGGAGAA
ACAGGCTGCACAGAAGAGGAAAGCGCGCGCCGCCTTGATCCTCAAGAGCT
CGTTTCCCTACGTCCCCTTTATTGAGGCGAAGGCGGAGGGGCAGCTGCTC
CTGCCGCTGCTCCTCCTACAGTACGTACAGGAACAGCAGCCGCAACAACA
ATAGATGGCGTCGCTTACATCCACCGCCCGTCCTCCCTCCACCCCTCAGT
CGCAACAACAGCAACGGCAATTCCCACAGCCCCATTCTCCTCTCTCCTCC
CAGCAGCATCAGCAGCAGCAGCCATCGAACACACTGTACCCCTCATCTTC
CTCCTCCCCTGCCTCCTTCACCGCCCCCTCGCTCTCCTCCTTCTATCCCA
CCACCACCCAACGCCACCTCCAACCCGGCGCACCTCAAGGGAAGGACGAG
GGAGGGAAGGATGGATCGAATGAAGACGTGCTCATCCAAAACGAGTGGAT
CACGGGCGCGACCTCCTCGGTCGGGACCTGCCTCTCCATGTGCCCCCCTG
ACGAAGTCCTCATGCGGGAGTCCAACCGCAACAAGCTGGAAGACCGGCCC
TCCCTCCCCCCCTCCCTGTCGATGATCAAGGACTTGGAGAGGAACCCTCC
AGCTGACTACCCCATGTCCAAAATCCGCCCCGTGGAATGGCTCTTGAAGT
CAGTCGAATACATGGAGGACGAACTCATGGACAAGGGGAGGGAAGGGAGG
GAGGGCGGGAGGGCGGGAGGGCGGTTGCTGGATTCGGATCGGAGTTGGGG
TCAGCACCACCTCAACTACAACCCCGACTTTGTCCGCGACGACGGCAAGC
AAAACACGGAACAGCTGACCAACACCCTCGTGCCCCTGAAGGAGAACTAC
AGCTACGCCCACATGCTCCACCAGCCAAGCCTCTGCAAGCACGAGGCAGA
ATTCCATTCATATTCGGTGCTTTTGACGGGAGACTTAAAACAGGCCCTGA
AGGGCGGGCCTGGCGTCTCCTCCTCCCCCGAAGTCCGTCTGGCGATCGAC
GTCTTGGGCAGCGTCGAAACGGACAATTTCGCCCGTTTTTTCGCCCTTTT
ACGCAAGGCACCTTATTTGATGGCCTGCCTGATGGCCAAGCATGTGGAGA
GGATGCGGGATAAAGCCCTGGAGGTGTGGGCGCGCGCCTTCAACCCGACC
AAGCAGAAGGCCACGTCTTTCTCACTGGAAGAGATATGCTACGCCTTGTG
CCTGCAGGGTGAGGAGGAATTGCGGGAATTGGCACAGAGCCGACCATGGC
TGGAGGTCGTCCAGATGGAGGGGGAGGGAGGAAAGGCAGGAAGTGCGGTG
AGGGTGACGCTGCGGCGGGCAACGGCAGCAGACAGACAGCGAGGTCTACT
GATGATGACCCCCTCACTGAGGGGCACTGATGGTGAGGAGCTGGATGAGG
AGAAACAGGCTGCACAGAAGAGGAAAGCGCGCGCCGCCTTGATCCTCAAG
AGCTCGTTTCCCTACGTCCCCTTTATTGAGGCGAAGGCGGAGGGGCAGCT
GCTCCTGCCGCTGCTCCTCCTACAGTACGTACAGGAACAGCAGCCGCAAC
AACAATAGATGGCGTCGCTTACATCCACCGCCCGTCCTCCCTCCACCCCT
CAGTCGCAACAACAGCAACGGCAATTCCCACAGCCCCATTCTCCTCTCTC
CTCCCAGCAGCATCAGCAGCAGCAGCCATCGAACACACTGTACCCCTCAT
CTTCCTCCTCCCCTGCCTCCTTCACCGCCCCCTCGCTCTCCTCCTTCTAT
CCCACCACCACCCAACGCCACCTCCAACCCGGCGCACCTCAAGGGAAGGA
CGAGGGAGGGAAGGATGGATCGAATGAAGACGTGCTCATCCAAAACGAGT
GGATCACGGGCGCGACCTCCTCGGTCGGGACCTGCCTCTCCATGTGCCCC
CCTGACGAAGTCCTCATGCGGGAGTCCAACCGCAACAAGCTGGAAGACCG
GCCCTCCCTCCCCCCCTCCCTGTCGATGATCAAGGACTTGGAGAGGAACC
CTCCAGCTGACTACCCCATGTCCAAAATCCGCCCCGTGGAATGGCTCTTG
AAGTCAGTCGAATACATGGAGGACGAACTCATGGACAAGGGGAGGGAAGG
GAGGGAGGGCGGGAGGGCGGGAGGGCGGTTGCTGGATTCGGATCGGAGTT
GGGGTCAGCACCACCTCAACTACAACCCCGACTTTGTCCGCGACGACGGC
AAGCAAAACACGGAACAGCTGACCAACACCCTCGTGCCCCTGAAGGAGAA
CTACAGCTACGCCCACATGCTCCACCAGCCAAGCCTCTGCAAGCACGAGG
CAGAATTCCATTCATATTCGGTGCTTTTGACGGGAGACTTAAAACAGGCC
CTGAAGGGCGGGCCTGGCGTCTCCTCCTCCCCCGAAGTCCGTCTGGCGAT
CGACGTCTTGGGCAGCGTCGAAACGGACAATTTCGCCCGTTTTTTCGCCC
TTTTACGCAAGGCACCTTATTTGATGGCCTGCCTGATGGCCAAGCATGTG
GAGAGGATGCGGGATAAAGCCCTGGAGGTGTGGGCGCGCGCCTTCAACCC
GACCAAGCAGAAGGCCACGTCTTTCTCACTGGAAGAGATATGCTACGCCT
TGTGCCTGCAGGGTGAGGAGGAATTGCGGGAATTGGCACAGAGCCGACCA
TGGCTGGAGGTCGTCCAGATGGAGGGGGAGGGAGGAAAGGCAGGAAGTGC
GGTGAGGGTGACGCTGCGGCGGGCAACGGCAGCAGACAGACAGCGAGGTC
TACTGATGATGACCCCCTCACTGAGGGGCACTGATGGTGAGGAGCTGGAT
GAGGAGAAACAGGCTGCACAGAAGAGGAAAGCGCGCGCCGCCTTGATCCT
CAAGAGCTCGTTTCCCTACGTCCCCTTTATTGAGGCGAAGGCGGAGGGGC
AGCTGCTCCTGCCGCTGCTCCTCCTACAGTACGTACAGGAACAGCAGCCG
CAACAACAATAG

Synonyms

Publications