jgi.p|Nanoce1779_2|132009, mRNA_7348 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|132009
Unique Name	mRNA_7348
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1210
Alignment location	scaffold_19:288201..289410 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	132095
Track	FilteredModels2
ProteinId	132009

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:288201..289410 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|132009	gene_7348	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|132009	mRNA_7348-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7348	CDS_7348	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:288201..289410+
coding sequence from alignment at scaffold_19:288201..289410+

mRNA sequence

>mRNA_7348 ID=mRNA_7348|Name=jgi.p|Nanoce1779_2|132009|organism=Nannochloropsis oceanica|type=mRNA|length=1210bp
ACCACAGACAAGCAGCCTAGCTATGAACCCCAACCAGCCACCACCGGTAA
AATTCGGGCAACGAGGCGGCGCGTCTGGTTCGGCGGGAGGGACCATCACC
GGTGGACCGCAACAACAGCAGCAGGTTCCCTCCTTCGGCGGCGGCGCAAG
AGAGGGCGGAGGAACGTCACAGCATCAGCAACCGCCTCGTAACGCATTTC
CTGCTTTTGGTGGTGGTGGTACCGGAGGTATTGCCAGTGGAGGATTCAAT
CAGGCACCAACAGCATCTTCTAACGCGTGGGGTGCCGGCGGAGGAGGAGC
AGGAGGGGGTAGTTTTGGTTCAACAGGTGACAGCAGCAACAACGCTCGTC
CTCCTTCATCTACCCCTTCCTTTGGTCAAACCAGTACTAACAGTGGTTTC
AATACAACCAAAAAGAGGAGCACGACATTCGGGGTGGTCGGTAATGATAG
CAGCAGTAGCGGTTTCGGTAGCAGCAGCGTTCGCGGCGCTGGTGGGAGAG
GTAGACGAGGAGTACCTGGTGGACCCCCGTCCTCGTCGCAGCACGCAGCA
GTTTTTGGCGCGACAGCCGGAGGAAGGGGAGGAGAGGCCTTCAGATTCTC
ACAACAGACTCCCCCTTCCGGTAGAGCCAGTGGCGCGGGCGCGAGAGAAG
GGGGACCGCCCAGCTTTGGAGGAGGATGGGGAGGAGAGGCCTTTGGATCG
TCACAAGAGAGCACGCCGGTCCGGTTCGGTGGACATACTGCTGCTGGTAA
TACTGGTGGTGCTGGCGCTGCAGGAGGAGGAACGTCAAGCTTCGGTATTG
CTTCCGCTGGCGGTGCAACCGGTGGCTTTGGTACTCCTGCGGGGCCGCCT
TCCTTTTCCACTCACACTACTCCGTTGTCGTCTTTTTCGACTGGGAAGAA
AACAAGTCCCAGTGGAGTTCCTGCATTCCAAACACCTGGAGAAGGAGGTG
GTGGTCGTGGAGGTGGAGGACTACCAAGCTTTGGTGGTTCTGCTGCGGGT
GGTGGGTTCGGCGGGGCAAGAGGACGAGGAGGAACGGGGGGAGGAAATAT
CTTTTCGCGGAATCCCTCTCTACAGCAGCAGCAAGAACAGCAAGCCCCTT
CGACGCCTATCCCTGCATTTGGTGCTGCTTTGATGAGGAGCAACAGCAAA
AGTACGGGGAGCAGCAATAGCGGGGTAACGTTCGGTGGTCGAGGAGGGGG
GGGGAGGGAG

protein sequence of jgi.p|Nanoce1779_2|132009

>mRNA_7348-protein ID=mRNA_7348-protein|Name=jgi.p|Nanoce1779_2|132009|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MNPNQPPPVKFGQRGGASGSAGGTITGGPQQQQQVPSFGGGAREGGGTSQ
HQQPPRNAFPAFGGGGTGGIASGGFNQAPTASSNAWGAGGGGAGGGSFGS
TGDSSNNARPPSSTPSFGQTSTNSGFNTTKKRSTTFGVVGNDSSSSGFGS
SSVRGAGGRGRRGVPGGPPSSSQHAAVFGATAGGRGGEAFRFSQQTPPSG
RASGAGAREGGPPSFGGGWGGEAFGSSQESTPVRFGGHTAAGNTGGAGAA
GGGTSSFGIASAGGATGGFGTPAGPPSFSTHTTPLSSFSTGKKTSPSGVP
AFQTPGEGGGGRGGGGLPSFGGSAAGGGFGGARGRGGTGGGNIFSRNPSL
QQQQEQQAPSTPIPAFGAALMRSNSKSTGSSNSGVTFGGRGGGGRE

mRNA from alignment at scaffold_19:288201..289410+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7348 ID=mRNA_7348|Name=jgi.p|Nanoce1779_2|132009|organism=Nannochloropsis oceanica|type=mRNA|length=1210bp|location=Sequence derived from alignment at scaffold_19:288201..289410+ (Nannochloropsis oceanica)
ACCACAGACAAGCAGCCTAGCTATGAACCCCAACCAGCCACCACCGGTAA
AATTCGGGCAACGAGGCGGCGCGTCTGGTTCGGCGGGAGGGACCATCACC
GGTGGACCGCAACAACAGCAGCAGGTTCCCTCCTTCGGCGGCGGCGCAAG
AGAGGGCGGAGGAACGTCACAGCATCAGCAACCGCCTCGTAACGCATTTC
CTGCTTTTGGTGGTGGTGGTACCGGAGGTATTGCCAGTGGAGGATTCAAT
CAGGCACCAACAGCATCTTCTAACGCGTGGGGTGCCGGCGGAGGAGGAGC
AGGAGGGGGTAGTTTTGGTTCAACAGGTGACAGCAGCAACAACGCTCGTC
CTCCTTCATCTACCCCTTCCTTTGGTCAAACCAGTACTAACAGTGGTTTC
AATACAACCAAAAAGAGGAGCACGACATTCGGGGTGGTCGGTAATGATAG
CAGCAGTAGCGGTTTCGGTAGCAGCAGCGTTCGCGGCGCTGGTGGGAGAG
GTAGACGAGGAGTACCTGGTGGACCCCCGTCCTCGTCGCAGCACGCAGCA
GTTTTTGGCGCGACAGCCGGAGGAAGGGGAGGAGAGGCCTTCAGATTCTC
ACAACAGACTCCCCCTTCCGGTAGAGCCAGTGGCGCGGGCGCGAGAGAAG
GGGGACCGCCCAGCTTTGGAGGAGGATGGGGAGGAGAGGCCTTTGGATCG
TCACAAGAGAGCACGCCGGTCCGGTTCGGTGGACATACTGCTGCTGGTAA
TACTGGTGGTGCTGGCGCTGCAGGAGGAGGAACGTCAAGCTTCGGTATTG
CTTCCGCTGGCGGTGCAACCGGTGGCTTTGGTACTCCTGCGGGGCCGCCT
TCCTTTTCCACTCACACTACTCCGTTGTCGTCTTTTTCGACTGGGAAGAA
AACAAGTCCCAGTGGAGTTCCTGCATTCCAAACACCTGGAGAAGGAGGTG
GTGGTCGTGGAGGTGGAGGACTACCAAGCTTTGGTGGTTCTGCTGCGGGT
GGTGGGTTCGGCGGGGCAAGAGGACGAGGAGGAACGGGGGGAGGAAATAT
CTTTTCGCGGAATCCCTCTCTACAGCAGCAGCAAGAACAGCAAGCCCCTT
CGACGCCTATCCCTGCATTTGGTGCTGCTTTGATGAGGAGCAACAGCAAA
AGTACGGGGAGCAGCAATAGCGGGGTAACGTTCGGTGGTCGAGGAGGGGG
GGGGAGGGAG

Coding sequence (CDS) from alignment at scaffold_19:288201..289410+

>mRNA_7348 ID=mRNA_7348|Name=jgi.p|Nanoce1779_2|132009|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_19:288201..289410+ (Nannochloropsis oceanica)
ATGAACCCCAACCAGCCACCACCGGTAAAATTCGGGCAACGAGGCGGCGC
GTCTGGTTCGGCGGGAGGGACCATCACCGGTGGACCGCAACAACAGCAGC
AGGTTCCCTCCTTCGGCGGCGGCGCAAGAGAGGGCGGAGGAACGTCACAG
CATCAGCAACCGCCTCGTAACGCATTTCCTGCTTTTGGTGGTGGTGGTAC
CGGAGGTATTGCCAGTGGAGGATTCAATCAGGCACCAACAGCATCTTCTA
ACGCGTGGGGTGCCGGCGGAGGAGGAGCAGGAGGGGGTAGTTTTGGTTCA
ACAGGTGACAGCAGCAACAACGCTCGTCCTCCTTCATCTACCCCTTCCTT
TGGTCAAACCAGTACTAACAGTGGTTTCAATACAACCAAAAAGAGGAGCA
CGACATTCGGGGTGGTCGGTAATGATAGCAGCAGTAGCGGTTTCGGTAGC
AGCAGCGTTCGCGGCGCTGGTGGGAGAGGTAGACGAGGAGTACCTGGTGG
ACCCCCGTCCTCGTCGCAGCACGCAGCAGTTTTTGGCGCGACAGCCGGAG
GAAGGGGAGGAGAGGCCTTCAGATTCTCACAACAGACTCCCCCTTCCGGT
AGAGCCAGTGGCGCGGGCGCGAGAGAAGGGGGACCGCCCAGCTTTGGAGG
AGGATGGGGAGGAGAGGCCTTTGGATCGTCACAAGAGAGCACGCCGGTCC
GGTTCGGTGGACATACTGCTGCTGGTAATACTGGTGGTGCTGGCGCTGCA
GGAGGAGGAACGTCAAGCTTCGGTATTGCTTCCGCTGGCGGTGCAACCGG
TGGCTTTGGTACTCCTGCGGGGCCGCCTTCCTTTTCCACTCACACTACTC
CGTTGTCGTCTTTTTCGACTGGGAAGAAAACAAGTCCCAGTGGAGTTCCT
GCATTCCAAACACCTGGAGAAGGAGGTGGTGGTCGTGGAGGTGGAGGACT
ACCAAGCTTTGGTGGTTCTGCTGCGGGTGGTGGGTTCGGCGGGGCAAGAG
GACGAGGAGGAACGGGGGGAGGAAATATCTTTTCGCGGAATCCCTCTCTA
CAGCAGCAGCAAGAACAGCAAGCCCCTTCGACGCCTATCCCTGCATTTGG
TGCTGCTTTGATGAGGAGCAACAGCAAAAGTACGGGGAGCAGCAATAGCG
GGGTAACGTTCGGTGGTCGAGGAGGGGGGGGGAGGGAG

Synonyms

Publications