jgi.p|Nanoce1779_2|131879, mRNA_7345 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|131879
Unique Name	mRNA_7345
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	976
Alignment location	scaffold_19:281099..283406 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	131965
Track	FilteredModels2
ProteinId	131879

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:281099..283406 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|131879	gene_7345	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|131879	mRNA_7345-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7345	CDS_7345	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:281099..283406+
coding sequence from alignment at scaffold_19:281099..283406+

mRNA sequence

>mRNA_7345 ID=mRNA_7345|Name=jgi.p|Nanoce1779_2|131879|organism=Nannochloropsis oceanica|type=mRNA|length=976bp
CCTTCTGACGGAAAGGGAGGGAGGAAAGGAAGAAGGGTGGGTGACTGCGT
GGAAGGAGCCTCCTGCGAAAGTGGAGGCCTTGGTGAGCGGGGGGTTTTAT
GTAGTCTACCAGCTCGCCTGGATGTGGCCGGTCTTCCTACTGGCTTTTTT
GGTCTCCATCGGACTGAACGACGCGGTGGCGGAGGCGGCCTACCTACACC
AGCGGGCTAGGGGGTCTGCTGCAGCCACGGAGATACCGAGGCTCGTGGGC
GACCTCGTCTCTCGCCTCCTGACGGTCTACGCCCTCCTCTTCAACTCCCT
CCTCCTCCTCCTCCTTCCCCCCTTTCTCCTCCTCCTCCCTCCCCCCTTCT
CCTTCCCTCCCTCACTCCTGATCCTGCTTCGGCCTCTCAAGTGGATGTGT
CAGTTGTGGGGGTTTCTGCTCACCTGCTGGCTGGACTCCTTCTACGCGTT
TCAGTACGTATGGGCCCGGCAAGGCCAGCCGGTGGCGGAACAGACGAGTA
TTATCGAGGGGGACTGGTCCTACTTCCTCGGATTTGGCTTCCTGCCCGCC
CTGCTCTCCTTCTGGACGCCTTTCTTTGTGGGCACTGGCGCGTATGCCAG
CGTGTTTCCGACGTACATTCTTCTCGCCTTGCAAAGCAATCGTCCTTTTC
TCGTGTCGTCAATGGGAGGGAGGGAGGGAGGAGGGGTGGGGGTGGATGGA
GAAGAGGGGCCTCTGCCTTTGGGACGGGCGCCTGTCTTTTGGTTCGCTCG
GCGGGTAGAGCGGGCGGTTGTCCGGCAAGTGTCTGCCTTTCTCGACCACC
CCCTTGCCCCCGTCAAGGGGAGCGAGGAAGGGAGGGAGAAAGGGCGGGGG
CGGCATGGGAGGCGATAAGGGAGTACATGGTTGAATTTGTATAGGTGGGT
GTAACTTTATGGAGGAAAGCATGAAGAGAAAGACAGCATAGAAAGGATAG
GAAATTACGCCGCAAAAGGCCGCAAC

protein sequence of jgi.p|Nanoce1779_2|131879

>mRNA_7345-protein ID=mRNA_7345-protein|Name=jgi.p|Nanoce1779_2|131879|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MWPVFLLAFLVSIGLNDAVAEAAYLHQRARGSAAATEIPRLVGDLVSRLL
TVYALLFNSLLLLLLPPFLLLLPPPFSFPPSLLILLRPLKWMCQLWGFLL
TCWLDSFYAFQYVWARQGQPVAEQTSIIEGDWSYFLGFGFLPALLSFWTP
FFVGTGAYASVFPTYILLALQSNRPFLVSSMGGREGGGVGVDGEEGPLPL
GRAPVFWFARRVERAVVRQVSAFLDHPLAPVKGSEEGREKGRGRHGRR*

mRNA from alignment at scaffold_19:281099..283406+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7345 ID=mRNA_7345|Name=jgi.p|Nanoce1779_2|131879|organism=Nannochloropsis oceanica|type=mRNA|length=2308bp|location=Sequence derived from alignment at scaffold_19:281099..283406+ (Nannochloropsis oceanica)
CCTTCTGACGGAAAGGGAGGGAGGAAAGGAAGAAGGGTGGGTGACTGCGT
GGAAGGAGCCTCCTGCGAAAGTGGAGGCCTTGGTGAGCGGGGGGTTTTAT
GTAGTCTACCAGGTGAGGAGGGAGAGAGAGAGGGAAGGAGGGAGGGATGT
GCTATACCACAGGACTTCACGCCTAGGGTCTCTGTGGGTCACCCTCCCTC
CCTCCTTCCCTCCTTCTCTCCCTAGCTCGCCTGGATGTGGCCGGTCTTCC
TACTGGCTTTTTTGGTCTCCATCGGACTGAACGACGCGGTGGCGGAGGCG
GGTAAGGAGGGAGAGAGGGAAGGAGGGAGGGAGGGAGGGCGAGACGGTTG
ACCTCGCGTAAATAAATTCACGTTCATCATAATTTTCTTCTTTCATCCCT
CCCTCCGTCCCTCCCTTCGCTCTATGCACTGTAGCCTACCTACACCAGCG
GGCTAGGGGGTCTGCTGCAGCCACGGAGATACCGAGGGTAGGGAGGGAGG
GAGGGAAGGAGCGAGGGAAGGAGGGAGGGAAGGCAGGACCGCTCTCCTCT
GTCCCTGGTGCTAGTTTTTTTTTGTCTTTTTTATATCCCTCATCCCTCCA
TCCATCCACCCCTCTAGCTCGTGGGCGACCTCGTCTCTCGCCTCCTGACG
GTCTACGCCCTCCTCTTCAACTCCCTCCTCCTCCTCCTCCTTCCCCCCTT
TCTCCTCCTCCTCCCTCCCCCCTTCTCCTTCCCTCCCTCACTCCTGATCC
TGCTTCGGCCTCTCAAGTGGATGTGTCAGTTGTGGGGGTTTCTGCTCACC
TGGTAGACAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGAACAAGAGGGAGAGTATTGTTGTGGAGGGTGAGCTTCA
GGAAGGCCCTCCCTCCCCTCCTCTCTCCCTCCCTCGTTCTCTCCCTTAGC
AGGCTCAGATCCTTACTGGGATGCTTTTTATTGTGGGTTGGCACGGCCCG
AGCGGAGCACTAAAACGTCTGACCCTCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCTCCCCCCCTCCTTCCCTACCTCTCCCAGCTGGCTGGA
CTCCTTCTACGCGTTTCAGTACGTATGGGCCCGGCAAGGCCAGCCGGTGG
CGGAACAGACGAGTATTATCGAGGGGGACTGGTGAGGGAGCAAGGGAGTG
AGGGAGGGAGGGAAAGGAGGGAAGGAAAGGAGGGAGGGAGGAAAGGGAAG
GAGGGAGGGAAGAAGGGAAGTTAAACCCATATTTCGATATTGCGGCACTC
ACCTTCTCCCTACCTACCTACCTACCTCCCTCTCTCTCTTTCTCCCTCCC
TCCCTCAGGTCCTACTTCCTCGGATTTGGCTTCCTGCCCGCCCTGCTCTC
CTTCTGGACGCCTTTCTTTGTGGGCACTGGCGCGTATGCCAGCGTGTTTC
CGACGGTTGGGAGGGAGGGTGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGAAGGGAGGGATGAAGGGAGGGAGGAAGGAAGGGAAGGAGGGAGGGA
GGAAGGAAGGGAGGGAGTGGTATTCTGCCATTTTCTCCTTCTCAATGGCC
AGTGTCTTGTGTGTGAATATCATCCGATACTAGTAAGAGAGAGGGTGAGG
GAGGGAAGGAATGAAGAAGGGGGGAAAGGAGGGAAGGAAAGAGGAGGAAA
GGGCGGCGAGTCAAAATTACATGTATATACCATTGCGAGCTCACTCCTCT
TCGCGCTCTTTCTCTCCCTTCCTTTCCCCCTGACTTCTATTATCTCAACA
GTACATTCTTCTCGCCTTGCAAAGCAATCGTCCTTTTCTCGTGTCGTCAA
TGGGAGGGAGGGAGGGAGGAGGGGTGGGGGTGGATGGAGAAGAGGGGCCT
CTGCCTTTGGGACGGGCGCCTGTCTTTTGGTCAGTCCAGAAGCAAGGAGG
GAGGGGGGAGGAGAGGGGGGGAGGGAAGAAGGGAGTGTGTGACCGGCGAA
ACAAACATCAGGAGGGAATTACCATCTACGTTTATCTGACCCTCCCTCCC
CCCCTCCCTCCCTTCCTGGCCAGGTTCGCTCGGCGGGTAGAGCGGGCGGT
TGTCCGGCAAGTGTCTGCCTTTCTCGACCACCCCCTTGCCCCCGTCAAGG
GGAGCGAGGAAGGGAGGGAGAAAGGGCGGGGGCGGCATGGGAGGCGATAA
GGGAGTACATGGTTGAATTTGTATAGGTGGGTGTAACTTTATGGAGGAAA
GCATGAAGAGAAAGACAGCATAGAAAGGATAGGAAATTACGCCGCAAAAG
GCCGCAAC

Coding sequence (CDS) from alignment at scaffold_19:281099..283406+

>mRNA_7345 ID=mRNA_7345|Name=jgi.p|Nanoce1779_2|131879|organism=Nannochloropsis oceanica|type=CDS|length=5229bp|location=Sequence derived from alignment at scaffold_19:281099..283406+ (Nannochloropsis oceanica)
ATGTGGCCGGTCTTCCTACTGGCTTTTTTGGTCTCCATCGGACTGAACGA
CGCGGTGGCGGAGGCGGCCTACCTACACCAGCGGGCTAGGGGGTCTGCTG
CAGCCACGGAGATACCGAGGCTCGTGGGCGACCTCGTCTCTCGCCTCCTG
ACGGTCTACGCCCTCCTCTTCAACTCCCTCCTCCTCCTCCTCCTTCCCCC
CTTTCTCCTCCTCCTCCCTCCCCCCTTCTCCTTCCCTCCCTCACTCCTGA
TCCTGCTTCGGCCTCTCAAGTGGATGTGTCAGTTGTGGGGGTTTCTGCTC
ACCTGCTGGCTGGACTCCTTCTACGCGTTTCAGTACGTATGGGCCCGGCA
AGGCCAGCCGGTGGCGGAACAGACGAGTATTATCGAGGGGGACTGGTCCT
ACTTCCTCGGATTTGGCTTCCTGCCCGCCCTGCTCTCCTTCTGGACGCCT
TTCTTTGTGGGCACTGGCGCGTATGCCAGCGTGTTTCCGACGTACATTCT
TCTCGCCTTGCAAAGCAATCGTCCTTTTCTCGTGTCGTCAATGGGAGGGA
GGGAGGGAGGAGGGGTGGGGGTGGATGGAGAAGAGGGGCCTCTGCCTTTG
GGACGGGCGCCTGTCTTTTGGTTCGCTCGGCGGGTAGAGCGGGCGGTTGT
CCGGCAAGTGTCTGCCTTTCTCGACCACCCCCTTGCCCCCGTCAAGGGGA
GCGAGGAAGGGAGGGAGAAAGGGCGGGGGCGGCATGGGAGGCGATAAATG
TGGCCGGTCTTCCTACTGGCTTTTTTGGTCTCCATCGGACTGAACGACGC
GGTGGCGGAGGCGGCCTACCTACACCAGCGGGCTAGGGGGTCTGCTGCAG
CCACGGAGATACCGAGGCTCGTGGGCGACCTCGTCTCTCGCCTCCTGACG
GTCTACGCCCTCCTCTTCAACTCCCTCCTCCTCCTCCTCCTTCCCCCCTT
TCTCCTCCTCCTCCCTCCCCCCTTCTCCTTCCCTCCCTCACTCCTGATCC
TGCTTCGGCCTCTCAAGTGGATGTGTCAGTTGTGGGGGTTTCTGCTCACC
TGCTGGCTGGACTCCTTCTACGCGTTTCAGTACGTATGGGCCCGGCAAGG
CCAGCCGGTGGCGGAACAGACGAGTATTATCGAGGGGGACTGGTCCTACT
TCCTCGGATTTGGCTTCCTGCCCGCCCTGCTCTCCTTCTGGACGCCTTTC
TTTGTGGGCACTGGCGCGTATGCCAGCGTGTTTCCGACGTACATTCTTCT
CGCCTTGCAAAGCAATCGTCCTTTTCTCGTGTCGTCAATGGGAGGGAGGG
AGGGAGGAGGGGTGGGGGTGGATGGAGAAGAGGGGCCTCTGCCTTTGGGA
CGGGCGCCTGTCTTTTGGTTCGCTCGGCGGGTAGAGCGGGCGGTTGTCCG
GCAAGTGTCTGCCTTTCTCGACCACCCCCTTGCCCCCGTCAAGGGGAGCG
AGGAAGGGAGGGAGAAAGGGCGGGGGCGGCATGGGAGGCGATAAATGTGG
CCGGTCTTCCTACTGGCTTTTTTGGTCTCCATCGGACTGAACGACGCGGT
GGCGGAGGCGGCCTACCTACACCAGCGGGCTAGGGGGTCTGCTGCAGCCA
CGGAGATACCGAGGCTCGTGGGCGACCTCGTCTCTCGCCTCCTGACGGTC
TACGCCCTCCTCTTCAACTCCCTCCTCCTCCTCCTCCTTCCCCCCTTTCT
CCTCCTCCTCCCTCCCCCCTTCTCCTTCCCTCCCTCACTCCTGATCCTGC
TTCGGCCTCTCAAGTGGATGTGTCAGTTGTGGGGGTTTCTGCTCACCTGC
TGGCTGGACTCCTTCTACGCGTTTCAGTACGTATGGGCCCGGCAAGGCCA
GCCGGTGGCGGAACAGACGAGTATTATCGAGGGGGACTGGTCCTACTTCC
TCGGATTTGGCTTCCTGCCCGCCCTGCTCTCCTTCTGGACGCCTTTCTTT
GTGGGCACTGGCGCGTATGCCAGCGTGTTTCCGACGTACATTCTTCTCGC
CTTGCAAAGCAATCGTCCTTTTCTCGTGTCGTCAATGGGAGGGAGGGAGG
GAGGAGGGGTGGGGGTGGATGGAGAAGAGGGGCCTCTGCCTTTGGGACGG
GCGCCTGTCTTTTGGTTCGCTCGGCGGGTAGAGCGGGCGGTTGTCCGGCA
AGTGTCTGCCTTTCTCGACCACCCCCTTGCCCCCGTCAAGGGGAGCGAGG
AAGGGAGGGAGAAAGGGCGGGGGCGGCATGGGAGGCGATAAATGTGGCCG
GTCTTCCTACTGGCTTTTTTGGTCTCCATCGGACTGAACGACGCGGTGGC
GGAGGCGGCCTACCTACACCAGCGGGCTAGGGGGTCTGCTGCAGCCACGG
AGATACCGAGGCTCGTGGGCGACCTCGTCTCTCGCCTCCTGACGGTCTAC
GCCCTCCTCTTCAACTCCCTCCTCCTCCTCCTCCTTCCCCCCTTTCTCCT
CCTCCTCCCTCCCCCCTTCTCCTTCCCTCCCTCACTCCTGATCCTGCTTC
GGCCTCTCAAGTGGATGTGTCAGTTGTGGGGGTTTCTGCTCACCTGCTGG
CTGGACTCCTTCTACGCGTTTCAGTACGTATGGGCCCGGCAAGGCCAGCC
GGTGGCGGAACAGACGAGTATTATCGAGGGGGACTGGTCCTACTTCCTCG
GATTTGGCTTCCTGCCCGCCCTGCTCTCCTTCTGGACGCCTTTCTTTGTG
GGCACTGGCGCGTATGCCAGCGTGTTTCCGACGTACATTCTTCTCGCCTT
GCAAAGCAATCGTCCTTTTCTCGTGTCGTCAATGGGAGGGAGGGAGGGAG
GAGGGGTGGGGGTGGATGGAGAAGAGGGGCCTCTGCCTTTGGGACGGGCG
CCTGTCTTTTGGTTCGCTCGGCGGGTAGAGCGGGCGGTTGTCCGGCAAGT
GTCTGCCTTTCTCGACCACCCCCTTGCCCCCGTCAAGGGGAGCGAGGAAG
GGAGGGAGAAAGGGCGGGGGCGGCATGGGAGGCGATAAATGTGGCCGGTC
TTCCTACTGGCTTTTTTGGTCTCCATCGGACTGAACGACGCGGTGGCGGA
GGCGGCCTACCTACACCAGCGGGCTAGGGGGTCTGCTGCAGCCACGGAGA
TACCGAGGCTCGTGGGCGACCTCGTCTCTCGCCTCCTGACGGTCTACGCC
CTCCTCTTCAACTCCCTCCTCCTCCTCCTCCTTCCCCCCTTTCTCCTCCT
CCTCCCTCCCCCCTTCTCCTTCCCTCCCTCACTCCTGATCCTGCTTCGGC
CTCTCAAGTGGATGTGTCAGTTGTGGGGGTTTCTGCTCACCTGCTGGCTG
GACTCCTTCTACGCGTTTCAGTACGTATGGGCCCGGCAAGGCCAGCCGGT
GGCGGAACAGACGAGTATTATCGAGGGGGACTGGTCCTACTTCCTCGGAT
TTGGCTTCCTGCCCGCCCTGCTCTCCTTCTGGACGCCTTTCTTTGTGGGC
ACTGGCGCGTATGCCAGCGTGTTTCCGACGTACATTCTTCTCGCCTTGCA
AAGCAATCGTCCTTTTCTCGTGTCGTCAATGGGAGGGAGGGAGGGAGGAG
GGGTGGGGGTGGATGGAGAAGAGGGGCCTCTGCCTTTGGGACGGGCGCCT
GTCTTTTGGTTCGCTCGGCGGGTAGAGCGGGCGGTTGTCCGGCAAGTGTC
TGCCTTTCTCGACCACCCCCTTGCCCCCGTCAAGGGGAGCGAGGAAGGGA
GGGAGAAAGGGCGGGGGCGGCATGGGAGGCGATAAATGTGGCCGGTCTTC
CTACTGGCTTTTTTGGTCTCCATCGGACTGAACGACGCGGTGGCGGAGGC
GGCCTACCTACACCAGCGGGCTAGGGGGTCTGCTGCAGCCACGGAGATAC
CGAGGCTCGTGGGCGACCTCGTCTCTCGCCTCCTGACGGTCTACGCCCTC
CTCTTCAACTCCCTCCTCCTCCTCCTCCTTCCCCCCTTTCTCCTCCTCCT
CCCTCCCCCCTTCTCCTTCCCTCCCTCACTCCTGATCCTGCTTCGGCCTC
TCAAGTGGATGTGTCAGTTGTGGGGGTTTCTGCTCACCTGCTGGCTGGAC
TCCTTCTACGCGTTTCAGTACGTATGGGCCCGGCAAGGCCAGCCGGTGGC
GGAACAGACGAGTATTATCGAGGGGGACTGGTCCTACTTCCTCGGATTTG
GCTTCCTGCCCGCCCTGCTCTCCTTCTGGACGCCTTTCTTTGTGGGCACT
GGCGCGTATGCCAGCGTGTTTCCGACGTACATTCTTCTCGCCTTGCAAAG
CAATCGTCCTTTTCTCGTGTCGTCAATGGGAGGGAGGGAGGGAGGAGGGG
TGGGGGTGGATGGAGAAGAGGGGCCTCTGCCTTTGGGACGGGCGCCTGTC
TTTTGGTTCGCTCGGCGGGTAGAGCGGGCGGTTGTCCGGCAAGTGTCTGC
CTTTCTCGACCACCCCCTTGCCCCCGTCAAGGGGAGCGAGGAAGGGAGGG
AGAAAGGGCGGGGGCGGCATGGGAGGCGATAAATGTGGCCGGTCTTCCTA
CTGGCTTTTTTGGTCTCCATCGGACTGAACGACGCGGTGGCGGAGGCGGC
CTACCTACACCAGCGGGCTAGGGGGTCTGCTGCAGCCACGGAGATACCGA
GGCTCGTGGGCGACCTCGTCTCTCGCCTCCTGACGGTCTACGCCCTCCTC
TTCAACTCCCTCCTCCTCCTCCTCCTTCCCCCCTTTCTCCTCCTCCTCCC
TCCCCCCTTCTCCTTCCCTCCCTCACTCCTGATCCTGCTTCGGCCTCTCA
AGTGGATGTGTCAGTTGTGGGGGTTTCTGCTCACCTGCTGGCTGGACTCC
TTCTACGCGTTTCAGTACGTATGGGCCCGGCAAGGCCAGCCGGTGGCGGA
ACAGACGAGTATTATCGAGGGGGACTGGTCCTACTTCCTCGGATTTGGCT
TCCTGCCCGCCCTGCTCTCCTTCTGGACGCCTTTCTTTGTGGGCACTGGC
GCGTATGCCAGCGTGTTTCCGACGTACATTCTTCTCGCCTTGCAAAGCAA
TCGTCCTTTTCTCGTGTCGTCAATGGGAGGGAGGGAGGGAGGAGGGGTGG
GGGTGGATGGAGAAGAGGGGCCTCTGCCTTTGGGACGGGCGCCTGTCTTT
TGGTTCGCTCGGCGGGTAGAGCGGGCGGTTGTCCGGCAAGTGTCTGCCTT
TCTCGACCACCCCCTTGCCCCCGTCAAGGGGAGCGAGGAAGGGAGGGAGA
AAGGGCGGGGGCGGCATGGGAGGCGATAA

Synonyms

Publications