jgi.p|Nanoce1779_2|598363, mRNA_7341 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598363
Unique NamemRNA_7341
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length965
Alignment locationscaffold_19:269769..271280 -

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Properties
Property NameValue
TranscriptId598449
TrackFilteredModels2
ProteinId598363
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:269769..271280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598363gene_7341Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598363mRNA_7341-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7341CDS_7341Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7341 ID=mRNA_7341|Name=jgi.p|Nanoce1779_2|598363|organism=Nannochloropsis oceanica|type=mRNA|length=965bp
GGGAGGGCGGGGGGGAGGGAGGGGTGATGAGGACGGAGGGGTGCTATCAC
TGCTTTCATGTGGGATGTCTGGCCGAATGGTGGGCAAGGAGGGAGAGGGC
GGATAGGGAGGGCAGAAAGGAGGGAGGAGGTGGAGGAGTGTGGGGGGGAC
GGGTGCAGACTCTGCAGGTGAGGAAGGAGGGAAGGAGGGAAGGAGGGAAG
AAGGAAAGGAGCGTGGATGTCGTCTGTGCCACCGCCTTGCATTCATGCAC
TTGCCCCCCTTTCTTCCCTCTTCAACCAACCAGCGCCTTCTCGCCCGGCG
ACGTGGAGAGAAGGAGGAGGAGGAGCACGCCCTTTGCGTCTGTCAGTCCC
GCTTGGACGAGGTTGCCGCCTTCCTCCTCAGCCCTGACCTCGACAGCGAA
ATCCGCAGCGCCTTTCAAAAGGACCTCTCGGAGGAAGAGAGGCGGAAACG
ACAGCTCCGTCTCGCCATTAAATCCACTGGCACCAAAGTGCTTCAGACCC
AGCGGGAGCTAGCAGAAGCAGAGGCGGCGTGGCGGGAGGCCGAGGCCGCG
AAGGGACTGCAGCGGGCGATTCCGTGTTGTGTGTGTCGGCGTCCTTTGCG
ACTAGTCGACATGCCTCCTCGCCTGGTAGAGGCCATTGAGATGCTCGAAG
GAAGAGCACGAGGGGATGAGGGAGGGGAGGAGGGAGGGAGAAAAGGAGGA
AGGGAGGAAGCTACGCTCGAGCTGTCGGAGTCTGCCGGTCTCCCGCCTTC
CCTCCTAAGCGATCGGGAGAAGCAAGAGATGCGAGGGTACATTGAGGGGA
TGAGTGAGGAAAGCAGCGCCATGGTGTCAAGGCTGAGGGCGTTGCTGGAA
GAGAGGGGAAAGAAGGAAAAAAGGAGAGGGAGGAGGAGGAGCGAAGGAGG
GAGGGAGAGCGAGAAGAAGCGAATGCGGAGGACTCGGTGGAGACAGAGAC
TAGAATAGCGCACGA
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protein sequence of jgi.p|Nanoce1779_2|598363

>mRNA_7341-protein ID=mRNA_7341-protein|Name=jgi.p|Nanoce1779_2|598363|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MRTEGCYHCFHVGCLAEWWARRERADREGRKEGGGGGVWGGRVQTLQVRK
EGRREGGKKERSVDVVCATALHSCTCPPFFPLQPTSAFSPGDVERRRRRS
TPFASVSPAWTRLPPSSSALTSTAKSAAPFKRTSRRKRGGNDSSVSPLNP
LAPKCFRPSGS*
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mRNA from alignment at scaffold_19:269769..271280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7341 ID=mRNA_7341|Name=jgi.p|Nanoce1779_2|598363|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp|location=Sequence derived from alignment at scaffold_19:269769..271280- (Nannochloropsis oceanica)
GGGAGGGCGGGGGGGAGGGAGGGGTGATGAGGACGGAGGGGTGCTATCAC
TGCTTTCATGTGGGATGTCTGGCCGAATGGTGGGCAAGGAGGGAGAGGGC
GGATAGGGAGGGCAGAAAGGAGGGAGGAGGTGGAGGAGTGTGGGGGGGAC
GGGTGCAGACTCTGCAGGTGAGGAAGGAGGGAAGGAGGGAAGGAGGGAAG
AAGGAAAGGAGCGTGGATGTCGTCTGTGCCACCGCCTTGCATTCATGCAC
TTGCCCCCCTTTCTTCCCTCTTCAACCAACCAGCGCCTTCTCGCCCGGCG
ACGTGGAGAGAAGGAGGAGGAGGAGCACGCCCTTTGCGTCTGTCAGTCCC
GCTTGGACGAGGTTGCCGCCTTCCTCCTCAGGTGCGATTCTCGTACTCCC
TGCCCCCCCCTTCCCCCTTGCTATCACTCACGAGGACACGCCCCTCGTCC
GCCCCCCCTCCTCTCCCCCCTCCTTCCCTCCGTTCATTACTTCGCCCCCC
CCTCTTCCAGCCCTGACCTCGACAGCGAAATCCGCAGCGCCTTTCAAAAG
GACCTCTCGGAGGAAGAGAGGCGGAAACGACAGCTCCGTCTCGCCATTAA
ATCCACTGGCACCAAAGTGCTTCAGGTACGCCCTCCCTCCCTCCCTCCCA
CCAGTCATTCTTGTCGCTCACCATCCACCCCTCCCTCCCTTTCTCCCTTC
CTCTCTTTCTCCCGCCCTCCCTCTCTCTCTCCCTCAGACCCAGCGGGAGC
TAGCAGAAGCAGAGGCGGCGTGGCGGGAGGCCGAGGCCGCGAAGGGACTG
CAGCGGGCGATTCCGTGTTGTGTGTGTCGGCGTCCTTTGCGACTAGGTGA
GTGACATGGCAATGCCGAGCCGCATAGGATGGGGGTGTCGTCGCCCTCTG
CTCTCATAAAAAGGCTGCTAGCTCCCTCCCTTCATCCCTCCCTCACTAAA
GAACCATTCCCTCCGTTCCTCCCTGCGTCCCTCCCTCTTAAGTCGACATG
CCTCCTCGCCTGGTAGAGGCCATTGAGATGCTCGAAGGAAGAGCACGAGG
GGATGAGGGAGGGGAGGAGGGAGGGAGAAAAGGAGGAAGGGAGGAAGCTA
CGCTCGAGCTGTCGGAGTCTGCCGGTCTCCCGCCTTCCCTCCTAAGCGAT
CGGGAGAAGCAAGAGATGCGAGGGTACATTGAGGTGAGAAGGAGGGAGGG
AGGGAAGGAGGGAAGGAGGGAGGGAGGGAAGGAGAAAGTTTTTTGGGGAG
TGCAAAGCACATTCCACCGGCATGAACCTGACCATCATCCTTCCCACCTT
GTCATCCTCCCTTCCTCTCTCTCTCTTACTGCTTCTTTCACAGGGGATGA
GTGAGGAAAGCAGCGCCATGGTGTCAAGGCTGAGGGCGTTGCTGGAAGAG
AGGGGAAAGAAGGAAAAAAGGAGAGGGAGGAGGAGGAGCGAAGGAGGGAG
GGAGAGCGAGAAGAAGCGAATGCGGAGGACTCGGTGGAGACAGAGACTAG
AATAGCGCACGA
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Coding sequence (CDS) from alignment at scaffold_19:269769..271280-

>mRNA_7341 ID=mRNA_7341|Name=jgi.p|Nanoce1779_2|598363|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_19:269769..271280- (Nannochloropsis oceanica)
ACCCAGCGGGAGCTAGCCCTGACCTCGACAGCGAAATCCGCAGCGCCTTT
CAAAAGGACCTCTCGGAGGAAGAGAGGCGGAAACGACAGCTCCGTCTCGC
CATTAAATCCACTGGCACCAAAGTGCTTCAGATGAGGACGGAGGGGTGCT
ATCACTGCTTTCATGTGGGATGTCTGGCCGAATGGTGGGCAAGGAGGGAG
AGGGCGGATAGGGAGGGCAGAAAGGAGGGAGGAGGTGGAGGAGTGTGGGG
GGGACGGGTGCAGACTCTGCAGGTGAGGAAGGAGGGAAGGAGGGAAGGAG
GGAAGAAGGAAAGGAGCGTGGATGTCGTCTGTGCCACCGCCTTGCATTCA
TGCACTTGCCCCCCTTTCTTCCCTCTTCAACCAACCAGCGCCTTCTCGCC
CGGCGACGTGGAGAGAAGGAGGAGGAGGAGCACGCCCTTTGCGTCTGTCA
GTCCCGCTTGGACGAGGTTGCCGCCTTCCTCCTCAGACCCAGCGGGAGCT
AGCCCTGACCTCGACAGCGAAATCCGCAGCGCCTTTCAAAAGGACCTCTC
GGAGGAAGAGAGGCGGAAACGACAGCTCCGTCTCGCCATTAAATCCACTG
GCACCAAAGTGCTTCAGATGAGGACGGAGGGGTGCTATCACTGCTTTCAT
GTGGGATGTCTGGCCGAATGGTGGGCAAGGAGGGAGAGGGCGGATAGGGA
GGGCAGAAAGGAGGGAGGAGGTGGAGGAGTGTGGGGGGGACGGGTGCAGA
CTCTGCAGGTGAGGAAGGAGGGAAGGAGGGAAGGAGGGAAGAAGGAAAGG
AGCGTGGATGTCGTCTGTGCCACCGCCTTGCATTCATGCACTTGCCCCCC
TTTCTTCCCTCTTCAACCAACCAGCGCCTTCTCGCCCGGCGACGTGGAGA
GAAGGAGGAGGAGGAGCACGCCCTTTGCGTCTGTCAGTCCCGCTTGGACG
AGGTTGCCGCCTTCCTCCTCAGACCCAGCGGGAGCTAGCCCTGACCTCGA
CAGCGAAATCCGCAGCGCCTTTCAAAAGGACCTCTCGGAGGAAGAGAGGC
GGAAACGACAGCTCCGTCTCGCCATTAAATCCACTGGCACCAAAGTGCTT
CAGATGAGGACGGAGGGGTGCTATCACTGCTTTCATGTGGGATGTCTGGC
CGAATGGTGGGCAAGGAGGGAGAGGGCGGATAGGGAGGGCAGAAAGGAGG
GAGGAGGTGGAGGAGTGTGGGGGGGACGGGTGCAGACTCTGCAGGTGAGG
AAGGAGGGAAGGAGGGAAGGAGGGAAGAAGGAAAGGAGCGTGGATGTCGT
CTGTGCCACCGCCTTGCATTCATGCACTTGCCCCCCTTTCTTCCCTCTTC
AACCAACCAGCGCCTTCTCGCCCGGCGACGTGGAGAGAAGGAGGAGGAGG
AGCACGCCCTTTGCGTCTGTCAGTCCCGCTTGGACGAGGTTGCCGCCTTC
CTCCTCAG
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Synonyms
Publications