jgi.p|Nanoce1779_2|672665, mRNA_7337 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672665
Unique Name	mRNA_7337
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1597
Alignment location	scaffold_19:251063..253025 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672751
Track	FilteredModels2
ProteinId	672665

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:251063..253025 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672665	gene_7337	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672665	mRNA_7337-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7337	CDS_7337	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:251063..253025+
coding sequence from alignment at scaffold_19:251063..253025+

mRNA sequence

>mRNA_7337 ID=mRNA_7337|Name=jgi.p|Nanoce1779_2|672665|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp
GGACTCGGCCTTTCACCCTTCTTTTACGGTCAGTCTTTTACACCCCTTTC
CATCCTCCTTCCCCTCCAACACGACAGGCCAGACACGCACTTCGTCCACC
TTTTGGGAGCAACCCTCCCCCTCGCCTCGCTTTATTCCACTTGCACTGGC
CGCTTCTTTCCAAACGCCTCCTTAATCCCCCACCAACCCAGAACAGCCAC
AGCATCCACACGCGGAGCACCGAGGACAAATGAACACCACGTTCATGACA
GAGGAAGCCTCACAAGCCTTTGTTCAAGGCTCGAACTTGACGCCTGAGGA
GCGCGGTCGACTAGAGCACATCCAGGCGTTCCGGCAGCTCCACCACGAGG
CCTTGTCAGGGGAGGATCGACGACGGCGGCGGCGCAGAAGGTCAGGAGAA
GAGGGCGAAGGAAGAGGAGAGTATTTAAGTGAAATGCCAGCACAAGACAA
GGTCCACGCTCCCTTCCCCCTCCGTGATAGCTGGACCCCTCGGCCCGCCC
GCCCTGTTGAGAGTCTGCGACCGTGGGATGATGAAGATTGTCTCCGATTT
CGGCTTGAGAATTACACACTGGATGCGGTGGGAAAGCTTGTGAGAATTGA
CTACACGGACAAGCTTGCGGCTACTGACGTTCCTCCACCCCTCGTTTCCA
AGGCTCTCTTCCAGGAGGAGGTCTCTGCTCGGCGCTTGGTCGTTCCTCGA
CACTCCTTCCAGTCCATGCGCGTCTCGGACGGAGGCAGAAAGGGAGGGCA
AGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGGAAGCGGTGGAAATGG
ACACTTTTTCCTTGGAAGCCCTCGCAAAGTGGGAACGGCGAAGAGAAGAG
CTCGCGTCCCTCCCTACGGTAGAGCTGGGAGGGAGGGAGCGGAGGCGACC
GGCGGTGCGAGCCGACAGTGTAAGTATTTATGCCTACATGTGAAATTAAG
GGATTGACATCGATGAGGGGAGTCTACATATGAAAATAAGGGATTGATAT
CGATGAGGAGAGCGAGTCGACGCGATCTCAGCTACCGCTTGAAATGGCTA
GAGGGAAGGAACAAAGCATACGTATAATGAATGAAAGCGAAAGGATCAAA
GTAGTCAATATTTATACGTTTGGATCGATGGAGGAAAGCGAGCGCACACA
AGACCTATGCTAGGAGGAAAGGGGAAGGAAAAGGGGACATGATAAAATTT
AAAAGATAATTATGTTTACGGTTACGGCCCCCCATTTCTATCATTCTCTT
TTCCTTTGTCTTCCGGTTCCCACTCTATTCTTTTTCTTCTTTTTTTCGGT
CTTCTTTGCTTCCCCTCCTACTCCTGCTCCTGCTCCTGCTGCAGCAGTTG
CGAGTCCTACTGTCTTTTCCGAATCAATCCTCTCTTAATCTGTCTACGTT
GCTTCCTCTTGTCCTTCCCTTCAATATTTCTCTCGTCGTCTTTTTATCCC
GATCTTTGTATGGTGCTTTCTCCTAAATCACGTTTCTGGCTTCTTAAATA
TCTATCCCTTCCTCCCTCCCTTCCTTCTTCCCTCTCCATCTCCCTCTCTC
CAATTTAATCTTCACTTCTTTGCCTTGCCCTTCCCTTTCCCCTTTCC

protein sequence of jgi.p|Nanoce1779_2|672665

>mRNA_7337-protein ID=mRNA_7337-protein|Name=jgi.p|Nanoce1779_2|672665|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MNTTFMTEEASQAFVQGSNLTPEERGRLEHIQAFRQLHHEALSGEDRRRR
RRRRSGEEGEGRGEYLSEMPAQDKVHAPFPLRDSWTPRPARPVESLRPWD
DEDCLRFRLENYTLDAVGKLVRIDYTDKLAATDVPPPLVSKALFQEEVSA
RRLVVPRHSFQSMRVSDGGRKGGQEGGREEGREGGEAVEMDTFSLEALAK
WERRREELASLPTVELGGRERRRPAVRADSVSIYAYM*

mRNA from alignment at scaffold_19:251063..253025+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7337 ID=mRNA_7337|Name=jgi.p|Nanoce1779_2|672665|organism=Nannochloropsis oceanica|type=mRNA|length=1963bp|location=Sequence derived from alignment at scaffold_19:251063..253025+ (Nannochloropsis oceanica)
GGACTCGGCCTTTCACCCTTCTTTTACGGTCAGTCTTTTACACCCCTTTC
CATCCTCCTTCCCCTCCAACACGACAGGCCAGACACGCACTTCGTCCACC
TTTTGGGAGCAACCCTCCCCCTCGCCTCGCTTTATTCCACTTGCACTGGC
CGCTTCTTTCCAAACGCCTCCTTAATCCCCCACCAACCCAGAACAGCCAC
AGCATCCACACGCGGAGCACCGAGGACAAATGAACACCACGTTCATGACA
GAGGAAGCCTCACAAGCCTTTGTTCAAGGCTCGAACTTGACGCCTGAGGA
GCGCGGTCGACTAGAGCACATCCAGGCGTTCCGGCAGCTCCACCACGAGG
CCTTGTCAGGGGAGGATCGACGACGGCGGCGGCGCAGAAGGTCAGGAGAA
GAGGGCGAAGGAAGAGGAGAGTATTTAAGTGAAATGCCAGCACAAGACAA
GGTAGGTATTCTAGTATGTGCCTGCTCGGGCTTGTGGTGTAGTTGTCTTA
CCCTTGCCTCCCTCCCTCCCTCTCTCCCTCTTTCAGGTCCACGCTCCCTT
CCCCCTCCGTGATAGCTGGACCCCTCGGCCCGCCCGCCCTGTTGAGAGTC
TGCGACCGTGGGATGATGAAGATTGTCTCCGATTTCGGCTTGAGAATTAC
ACACTGGATGCGGTGGGAAAGCTTGTGAGGTGAGGGATGGGAGGGAAGGA
GGGAATGGGGAAGGAAGGAAAGGGAGGGGGAAACGTATAGGGGAAGATCT
AAAGAAAGGCAAAACGAGCGATTGCGTATGTCATTATAATGCTCATTTCT
TCTTGTGCATTCGTGTGTTAGAATTGACTACACGGACAAGCTTGCGGCTA
CTGACGTTCCTCCACCCCTCGTTTCCAAGGCTCTCTTCCAGGTATGTCCC
ACTCCGTACTTTCTCCCTCCCTACCTCCCTTCTTCTCCTTCCCAATGTTG
TCTAGTCACCTACAGCGAATGCTTACCACCCTTTGTTTTCTTCCCTCTTT
TCCCTCCCTCTCGGTCCTCCCCCTCCTCAGGAGGAGGTCTCTGCTCGGCG
CTTGGTCGTTCCTCGACACTCCTTCCAGTCCATGCGCGTCTCGGACGGAG
GCAGAAAGGGAGGGCAAGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGG
GAAGCGGTGGAAATGGACACTTTTTCCTTGGAAGCCCTCGCAAAGTGGGA
ACGGCGAAGAGAAGAGCTCGCGTCCCTCCCTACGGTAGAGCTGGGAGGGA
GGGAGCGGAGGCGACCGGCGGTGCGAGCCGACAGTGTAAGTATTTATGCC
TACATGTGAAATTAAGGGATTGACATCGATGAGGGGAGTCTACATATGAA
AATAAGGGATTGATATCGATGAGGAGAGCGAGTCGACGCGATCTCAGCTA
CCGCTTGAAATGGCTAGAGGGAAGGAACAAAGCATACGTATAATGAATGA
AAGCGAAAGGATCAAAGTAGTCAATATTTATACGTTTGGATCGATGGAGG
AAAGCGAGCGCACACAAGACCTATGCTAGGAGGAAAGGGGAAGGAAAAGG
GGACATGATAAAATTTAAAAGATAATTATGTTTACGGTTACGGCCCCCCA
TTTCTATCATTCTCTTTTCCTTTGTCTTCCGGTTCCCACTCTATTCTTTT
TCTTCTTTTTTTCGGTCTTCTTTGCTTCCCCTCCTACTCCTGCTCCTGCT
CCTGCTGCAGCAGTTGCGAGTCCTACTGTCTTTTCCGAATCAATCCTCTC
TTAATCTGTCTACGTTGCTTCCTCTTGTCCTTCCCTTCAATATTTCTCTC
GTCGTCTTTTTATCCCGATCTTTGTATGGTGCTTTCTCCTAAATCACGTT
TCTGGCTTCTTAAATATCTATCCCTTCCTCCCTCCCTTCCTTCTTCCCTC
TCCATCTCCCTCTCTCCAATTTAATCTTCACTTCTTTGCCTTGCCCTTCC
CTTTCCCCTTTCC

Coding sequence (CDS) from alignment at scaffold_19:251063..253025+

>mRNA_7337 ID=mRNA_7337|Name=jgi.p|Nanoce1779_2|672665|organism=Nannochloropsis oceanica|type=CDS|length=2856bp|location=Sequence derived from alignment at scaffold_19:251063..253025+ (Nannochloropsis oceanica)
ATGAACACCACGTTCATGACAGAGGAAGCCTCACAAGCCTTTGTTCAAGG
CTCGAACTTGACGCCTGAGGAGCGCGGTCGACTAGAGCACATCCAGGCGT
TCCGGCAGCTCCACCACGAGGCCTTGTCAGGGGAGGATCGACGACGGCGG
CGGCGCAGAAGGTCAGGAGAAGAGGGCGAAGGAAGAGGAGAGTATTTAAG
TGAAATGCCAGCACAAGACAAGGTCCACGCTCCCTTCCCCCTCCGTGATA
GCTGGACCCCTCGGCCCGCCCGCCCTGTTGAGAGTCTGCGACCGTGGGAT
GATGAAGATTGTCTCCGATTTCGGCTTGAGAATTACACACTGGATGCGGT
GGGAAAGCTTGTGAGAATTGACTACACGGACAAGCTTGCGGCTACTGACG
TTCCTCCACCCCTCGTTTCCAAGGCTCTCTTCCAGGAGGAGGTCTCTGCT
CGGCGCTTGGTCGTTCCTCGACACTCCTTCCAGTCCATGCGCGTCTCGGA
CGGAGGCAGAAAGGGAGGGCAAGAGGGAGGGAGGGAGGAAGGGAGGGAGG
GAGGGGAAGCGGTGGAAATGGACACTTTTTCCTTGGAAGCCCTCGCAAAG
TGGGAACGGCGAAGAGAAGAGCTCGCGTCCCTCCCTACGGTAGAGCTGGG
AGGGAGGGAGCGGAGGCGACCGGCGGTGCGAGCCGACAGTGTAAGTATTT
ATGCCTACATGTGAATGAACACCACGTTCATGACAGAGGAAGCCTCACAA
GCCTTTGTTCAAGGCTCGAACTTGACGCCTGAGGAGCGCGGTCGACTAGA
GCACATCCAGGCGTTCCGGCAGCTCCACCACGAGGCCTTGTCAGGGGAGG
ATCGACGACGGCGGCGGCGCAGAAGGTCAGGAGAAGAGGGCGAAGGAAGA
GGAGAGTATTTAAGTGAAATGCCAGCACAAGACAAGGTCCACGCTCCCTT
CCCCCTCCGTGATAGCTGGACCCCTCGGCCCGCCCGCCCTGTTGAGAGTC
TGCGACCGTGGGATGATGAAGATTGTCTCCGATTTCGGCTTGAGAATTAC
ACACTGGATGCGGTGGGAAAGCTTGTGAGAATTGACTACACGGACAAGCT
TGCGGCTACTGACGTTCCTCCACCCCTCGTTTCCAAGGCTCTCTTCCAGG
AGGAGGTCTCTGCTCGGCGCTTGGTCGTTCCTCGACACTCCTTCCAGTCC
ATGCGCGTCTCGGACGGAGGCAGAAAGGGAGGGCAAGAGGGAGGGAGGGA
GGAAGGGAGGGAGGGAGGGGAAGCGGTGGAAATGGACACTTTTTCCTTGG
AAGCCCTCGCAAAGTGGGAACGGCGAAGAGAAGAGCTCGCGTCCCTCCCT
ACGGTAGAGCTGGGAGGGAGGGAGCGGAGGCGACCGGCGGTGCGAGCCGA
CAGTGTAAGTATTTATGCCTACATGTGAATGAACACCACGTTCATGACAG
AGGAAGCCTCACAAGCCTTTGTTCAAGGCTCGAACTTGACGCCTGAGGAG
CGCGGTCGACTAGAGCACATCCAGGCGTTCCGGCAGCTCCACCACGAGGC
CTTGTCAGGGGAGGATCGACGACGGCGGCGGCGCAGAAGGTCAGGAGAAG
AGGGCGAAGGAAGAGGAGAGTATTTAAGTGAAATGCCAGCACAAGACAAG
GTCCACGCTCCCTTCCCCCTCCGTGATAGCTGGACCCCTCGGCCCGCCCG
CCCTGTTGAGAGTCTGCGACCGTGGGATGATGAAGATTGTCTCCGATTTC
GGCTTGAGAATTACACACTGGATGCGGTGGGAAAGCTTGTGAGAATTGAC
TACACGGACAAGCTTGCGGCTACTGACGTTCCTCCACCCCTCGTTTCCAA
GGCTCTCTTCCAGGAGGAGGTCTCTGCTCGGCGCTTGGTCGTTCCTCGAC
ACTCCTTCCAGTCCATGCGCGTCTCGGACGGAGGCAGAAAGGGAGGGCAA
GAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGGAAGCGGTGGAAATGGA
CACTTTTTCCTTGGAAGCCCTCGCAAAGTGGGAACGGCGAAGAGAAGAGC
TCGCGTCCCTCCCTACGGTAGAGCTGGGAGGGAGGGAGCGGAGGCGACCG
GCGGTGCGAGCCGACAGTGTAAGTATTTATGCCTACATGTGAATGAACAC
CACGTTCATGACAGAGGAAGCCTCACAAGCCTTTGTTCAAGGCTCGAACT
TGACGCCTGAGGAGCGCGGTCGACTAGAGCACATCCAGGCGTTCCGGCAG
CTCCACCACGAGGCCTTGTCAGGGGAGGATCGACGACGGCGGCGGCGCAG
AAGGTCAGGAGAAGAGGGCGAAGGAAGAGGAGAGTATTTAAGTGAAATGC
CAGCACAAGACAAGGTCCACGCTCCCTTCCCCCTCCGTGATAGCTGGACC
CCTCGGCCCGCCCGCCCTGTTGAGAGTCTGCGACCGTGGGATGATGAAGA
TTGTCTCCGATTTCGGCTTGAGAATTACACACTGGATGCGGTGGGAAAGC
TTGTGAGAATTGACTACACGGACAAGCTTGCGGCTACTGACGTTCCTCCA
CCCCTCGTTTCCAAGGCTCTCTTCCAGGAGGAGGTCTCTGCTCGGCGCTT
GGTCGTTCCTCGACACTCCTTCCAGTCCATGCGCGTCTCGGACGGAGGCA
GAAAGGGAGGGCAAGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGGAA
GCGGTGGAAATGGACACTTTTTCCTTGGAAGCCCTCGCAAAGTGGGAACG
GCGAAGAGAAGAGCTCGCGTCCCTCCCTACGGTAGAGCTGGGAGGGAGGG
AGCGGAGGCGACCGGCGGTGCGAGCCGACAGTGTAAGTATTTATGCCTAC
ATGTGA

Synonyms

Publications