jgi.p|Nanoce1779_2|131629, mRNA_7336 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|131629
Unique NamemRNA_7336
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length838
Alignment locationscaffold_19:249729..251104 -

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Properties
Property NameValue
TranscriptId131715
TrackFilteredModels2
ProteinId131629
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:249729..251104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|131629gene_7336Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|131629mRNA_7336-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7336CDS_7336Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7336 ID=mRNA_7336|Name=jgi.p|Nanoce1779_2|131629|organism=Nannochloropsis oceanica|type=mRNA|length=838bp
TGTAAAAGACTGACCGTAAAAGAAGGGTGAAAGGCCGAGTCCATCCTTCA
GTTTGCAAGCATACCCGGCTCAATGACAACAAGCACGCACGTCTGACCAT
CTCTACCCACATCAATAAATGCCCCTCCGATGCACAGACAAGCGCACAGC
TAAGGCAAGGGCAACAAGCATCTGTGCGACAAGTGGACGGCCAAACCGCG
CTATGGACCCGAAGCCCAAACCCAAGCAAGACAACAGCATCATTTACGTC
GGCGGCCTGGACGAGAAGAGCACTGAAGAAATACTACACGCCGCCTTCAT
CCCATTTGGGAATATAATTGAAGTTAATATTCCCAAGGACTTCAAAGAAA
GTAATTTGGGAGGAATGGAGGGAGGGAAGAGGGAGGAAAGAGGGAGGAAA
GAGGGAGGGAGAGAGGGAGGAAGGGAGGGAGGAGAGGAAGAAAGGACACC
CTTCCCACCCACCTATACACACTATGATCGTGGTATTTCATCCTCATCGT
CTCCTTCCCTTCTTACTTTCTTCATTCTTCTAAGACACTACCCGCGGCTT
TGGGTTTGTACATTTCGAAAACGCCGACGACGCCGCCGCCGCTATTGACA
ACATGGAAGGGGCCGAGTTGCTCGGCCGCGTCCTCAAGTGCAACGTGGCC
AAGCCCATGCAGCACAAGCTGGGGGCCACCAAGGCGGTGTGGTCCACAGA
CGAATGGTTCAAAACACAGCTGGCGGAGGACAAGGACCTAGGCGATCAAC
TTGATTTCGAAGAGTTGGTGCCCGAGGCAGCAGGGAAGTAAATCAAACAC
GATAATGTAGCAAAAGTAGTCAGTTGCAGTGTCTTACG
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protein sequence of jgi.p|Nanoce1779_2|131629

>mRNA_7336-protein ID=mRNA_7336-protein|Name=jgi.p|Nanoce1779_2|131629|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MPLRCTDKRTAKARATSICATSGRPNRAMDPKPKPKQDNSIIYVGGLDEK
STEEILHAAFIPFGNIIEVNIPKDFKESNLGGMEGGKREERGRKEGGREG
GREGGEEERTPFPPTYTHYDRGISSSSSPSLLTFFILLRHYPRLWVCTFR
KRRRRRRRY*
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mRNA from alignment at scaffold_19:249729..251104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7336 ID=mRNA_7336|Name=jgi.p|Nanoce1779_2|131629|organism=Nannochloropsis oceanica|type=mRNA|length=1376bp|location=Sequence derived from alignment at scaffold_19:249729..251104- (Nannochloropsis oceanica)
TGTAAAAGACTGACCGTAAAAGAAGGGTGAAAGGCCGAGTCCATCCTTCA
GTTTGCAAGCATACCCGGCTCAATGACAACAAGCACGCACGTCTGACCAT
CTCTACCCACATCAATAAATGCCCCTCCGATGCACAGACAAGCGCACAGC
TAAGGCAAGGGCAACAAGCATCTGTGCGACAAGTGGACGGCCAAACCGCG
CTATGGACCCGAAGCCCAAACCCAAGCAAGACAACAGCATCATTTACGTC
GGTAAGTGCACCACTAGTCCTCCCTCATCGTCCTCCCTCAGCTTAGCCTT
CTCTTGCCAAGGCAACAAGGCATTCTCCCGACCAGTGCGCAGTGCCTCTA
GCGAGGCGTGGCAGGTGGGGCTGTCGAGTCAGAGTGCTTCCCAAACCCTT
TCGCGACCCTTCATTGCTTGCGGATGTCATTACTTTTTGCTCCATGCGCT
CCTCCCTGCCCTTCCCTCCCTCCCTCCCTCACTCAGTACCTTGACAAGGA
ACGCTTACGGTGATGATGCTGCAGATTGCCTTCACTACGAGCCCTGTGAT
TACTGACATTTACCGTTCTCTCCTCTCTTCTCCCTCCCTTTCCTTCCTCC
CTCAGGCGGCCTGGACGAGAAGAGCACTGAAGAAATACTACACGCCGCCT
TCATCCCATTTGGGAATATAATTGAAGTTAATATTCCCAAGGACTTCAAA
GAAAGTAATTTGGGAGGAATGGAGGGAGGGAAGAGGGAGGAAAGAGGGAG
GAAAGAGGGAGGGAGAGAGGGAGGAAGGGAGGGAGGAGAGGAAGAAAGGA
CACCCTTCCCACCCACCTATACACACTATGATCGTGGTATTTCATCCTCA
TCGTCTCCTTCCCTTCTTACTTTCTTCATTCTTCTAAGACACTACCCGCG
GCTTTGGGTTTGTACATTTCGAAAACGCCGACGACGCCGCCGCCGCTATT
GACAACATGGAAGGGGCCGAGTTGCTCGGTACGTGCGTTTCATTATCTAT
CCCTCTTTTCCAGGCACTCTCTAGTCTAGTCCATTGCGCCTCCTTCTGTG
CCTGAACCTGCTGATAGGCTCTGAAATATTCATTTTCTAAAGCTTGATTG
TTGAAATTTGTGTCTCCCTCCCTCCCTCCCTGGCCCCCTCCCTCCCTCCC
TGATCCCCGCAGGCCGCGTCCTCAAGTGCAACGTGGCCAAGCCCATGCAG
CACAAGCTGGGGGCCACCAAGGCGGTGTGGTCCACAGACGAATGGTTCAA
AACACAGCTGGCGGAGGACAAGGACCTAGGCGATCAACTTGATTTCGAAG
AGTTGGTGCCCGAGGCAGCAGGGAAGTAAATCAAACACGATAATGTAGCA
AAAGTAGTCAGTTGCAGTGTCTTACG
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Coding sequence (CDS) from alignment at scaffold_19:249729..251104-

>mRNA_7336 ID=mRNA_7336|Name=jgi.p|Nanoce1779_2|131629|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_19:249729..251104- (Nannochloropsis oceanica)
GCGGCCTGGACGAGAAGAGCACTGAAGAAATACTACACGCCGCCTTCATC
CCATTTGGGAATATAATTGAAGTTAATATTCCCAAGGACTTCAAAGAAAG
TAATTTGGGAGGAATGGAGGGAGGGAAGAGGGAGGAAAGAGGGAGGAAAG
AGGGAGGGAGAGAGGGAGGAAGGGAGGGAGGAGAGGAAGAAAGGACACCC
TTCCCACCCACCTATACACACTATGATCGTGGTATTTCATCCTCATCGTC
TCCTTCCCTTCTTACTTTCTTCATTCTTCTAAGACACTACCCGCGGCTTT
GGGTTTGTACATTTCGAAAACGCCGACGACGCCGCCGCCGCTATTGAATG
CCCCTCCGATGCACAGACAAGCGCACAGCTAAGGCAAGGGCAACAAGCAT
CTGTGCGACAAGTGGACGGCCAAACCGCGCTATGGACCCGAAGCCCAAAC
CCAAGCAAGACAACAGCATCATTTACGTCGGCGGCCTGGACGAGAAGAGC
ACTGAAGAAATACTACACGCCGCCTTCATCCCATTTGGGAATATAATTGA
AGTTAATATTCCCAAGGACTTCAAAGAAAGTAATTTGGGAGGAATGGAGG
GAGGGAAGAGGGAGGAAAGAGGGAGGAAAGAGGGAGGGAGAGAGGGAGGA
AGGGAGGGAGGAGAGGAAGAAAGGACACCCTTCCCACCCACCTATACACA
CTATGATCGTGGTATTTCATCCTCATCGTCTCCTTCCCTTCTTACTTTCT
TCATTCTTCTAAGACACTACCCGCGGCTTTGGGTTTGTACATTTCGAAAA
CGCCGACGACGCCGCCGCCGCTATTGAATGCCCCTCCGATGCACAGACAA
GCGCACAGCTAAGGCAAGGGCAACAAGCATCTGTGCGACAAGTGGACGGC
CAAACCGCGCTATGGACCCGAAGCCCAAACCCAAGCAAGACAACAGCATC
ATTTACGTCG
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Synonyms
Publications