jgi.p|Nanoce1779_2|131608, mRNA_7334 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|131608
Unique NamemRNA_7334
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1390
Alignment locationscaffold_19:246497..248210 -

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Properties
Property NameValue
TranscriptId131694
TrackFilteredModels2
ProteinId131608
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:246497..248210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|131608gene_7334Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|131608mRNA_7334-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7334CDS_7334Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7334 ID=mRNA_7334|Name=jgi.p|Nanoce1779_2|131608|organism=Nannochloropsis oceanica|type=mRNA|length=1390bp
GGAAGGCAAGGTGGTCGGGGGGGGTAAGAGTAAGGCATGAAAATAAGATA
GCCTCACGGCCCTTTTGCCCCCGTGCAATCACTCTGTCACGCAGCTCGCA
AGTCGTGCACCCACATGCTACCAGTCATACAGCAGCCACGTGCTACCCAC
CGGGTCAACCATCGAGCTGCGTACACCTTGCATCGCCAAATCTTAACTCT
TCTTGCCTCACCCCCTCAATTATCGATCCCAAGTTCCCAGGCCTCATACC
CTACCCCATAATTGCACGCAGTACAGGCGAAACGGATGGTTGACGACAAC
AACAACGACGACAACCCTTCCTACCCCCCCTCTATCCTGCAGTGGGTCCT
ACGGGCCTTCTCGCCCACTGGGAAAAGCAGGAGGCATGGCAATGTCACCA
CCATTACCACCGCCACCACCAGCGCCACTACTGGCCCCCCTGGCCCCAGT
CTCCTCAACGAATCCACATTTCCCTCGGACCTCCTCTTTCACACCCTCTC
CTACCTTGACCTCCCATCTCTCCTCCGCTCCCTCGCCCCAGCCTGCCCCT
CCTTCCACTCCCTCATTTCCTCCTCCCGACATGACATCCAATCTCTCTAC
CGCTGCCTTCTGCTCAAGGAAGTAGGGGGGGACTTAGGCTGCCTTGGGAC
GTATGGGATCGACGACGTAAATTGGCGAGAAGTTCTAGGGATATGGTGGA
GGGGAGAGTTGGCCTGGGAGGAAGTCAAAGAAGACGACGGAGGGAGAGAG
CGCGGAGCGGAGGGTTTAGGAGGAGGAAGAGGAGGGGAAAGCATGTTGCC
ATCACGGTATCTTCATCGGATTGCCTCGTCGTCCACGAGTCGGACTGCCT
ACATGTTTGGAGGGATGGGTGGTGACGGCGTGCTGCACGATTTGTGGCAG
CTGCAGCTTGAAGGGAGGTGGGGGGAGAGGGTCAGGTGCACCTCCCTCCC
TCTCGCCTCCTCCCCCACCTCACCCCATCCCTCCTATCGCTTCGCCTGCT
CCTTCAATCTCGTCCCTTCCCTCGACCCCCCCCCCCCCTTCCTCGTCCTC
CTCTTCAGCTAAGCTTCTCCTATTTGGCGGAGCTAGCGCCGATGGCAATT
TTCTAGGGGACACGTGGACCCTTGTCCTCCCTCCCTCCATTCCTCCCTCC
CTCCCTCCCTCCCTTCCTCCATGGCAAGAATTTTCCACCACAGACGAAGA
TGAAGAAGAGTCAAACGAAGGGGAAGCGAGAGCAGGAGGGAGGGAGAGGG
AAAGGGTGCCTCCGGCACGCTGGGGGCATAGCAGTGTGGTGGTGAAGGGG
CAGGGAGGGAGGGAGGGAGGGCAGGAGGGAGGCAGGGAGGCGAAGGTGCT
GATTTTCGGAGGCTCGTGCCCCGGGGAGGCGTTTGGGGAC
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protein sequence of jgi.p|Nanoce1779_2|131608

>mRNA_7334-protein ID=mRNA_7334-protein|Name=jgi.p|Nanoce1779_2|131608|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MVDDNNNDDNPSYPPSILQWVLRAFSPTGKSRRHGNVTTITTATTSATTG
PPGPSLLNESTFPSDLLFHTLSYLDLPSLLRSLAPACPSFHSLISSSRHD
IQSLYRCLLLKEVGGDLGCLGTYGIDDVNWREVLGIWWRGELAWEEVKED
DGGRERGAEGLGGGRGGESMLPSRYLHRIASSSTSRTAYMFGGMGGDGVL
HDLWQLQLEGRWGERVRCTSLPLASSPTSPHPSYRFACSFNLVPSLDPPP
PFLVLLFS*
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mRNA from alignment at scaffold_19:246497..248210-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7334 ID=mRNA_7334|Name=jgi.p|Nanoce1779_2|131608|organism=Nannochloropsis oceanica|type=mRNA|length=1714bp|location=Sequence derived from alignment at scaffold_19:246497..248210- (Nannochloropsis oceanica)
GGAAGGCAAGGTGGTCGGGGGGGGTAAGAGTAAGGCATGAAAATAAGATA
GCCTCACGGCCCTTTTGCCCCCGTGCAATCACTCTGTCACGCAGCTCGCA
AGTCGTGCACCCACATGCTACCAGTCATACAGCAGCCACGTGCTACCCAC
CGGGTCAACCATCGAGCTGCGTACACCTTGCATCGCCAAATCTTAACTCT
TCTTGCCTCACCCCCTCAATTATCGATCCCAAGTTCCCAGGCCTCATACC
CTACCCCATAATTGCACGCAGTACAGGCGAAACGGATGGTTGACGACAAC
AACAACGACGACAACCCTTCCTACCCCCCCTCTATCCTGCAGTGGGTCCT
ACGGGCCTTCTCGCCCACTGGGAAAAGCAGGAGGCATGGCAATGTCACCA
CCATTACCACCGCCACCACCAGCGCCACTACTGGCCCCCCTGGCCCCAGT
CTCCTCAACGAATCCACATTTCCCTCGGACCTCCTCTTTCACACCCTCTC
CTACCTTGACCTCCCATCTCTCCTCCGCTCCCTCGCCCCAGCCTGCCCCT
CCTTCCACTCCCTCATTTCCTCCTCCCGACATGACATCCAATCTCTCTAC
CGCTGCCTTCTGCTCAAGGAAGTAGGGGGGGACTTAGGCTGCCTTGGGAC
GTATGGGATCGACGACGTAAATTGGCGAGAAGTTCTAGGGATATGGTGGA
GGGGAGAGTTGGCCTGGGAGGAAGTCAAAGAAGACGACGGAGGGAGAGAG
CGCGGAGCGGAGGGTTTAGGAGGAGGAAGAGGAGGGGAAAGCATGTTGCC
ATCACGGTATCTTCATCGGATTGCCTCGTCGTCCACGAGTCGGTGAGTGG
AGAAGGAGGGACTGGATTGGCAGGGGGAAAGGAGTTAAGCGAAAATCTCG
GACGATACACCAGCCGGCTGTTCTCTCACTTCATTCGATCCTTCCCTTCC
CCTCCCTCCCTTTCTCACCTTATCCTTCCCTCCCCCTCCCTCCTTCACCA
TATCTCTTCCTCCGTTCTCTTCCCCTCACTGGCAGGACTGCCTACATGTT
TGGAGGGATGGGTGGTGACGGCGTGCTGCACGATTTGTGGCAGCTGCAGC
TTGAAGGGAGGTGGGGGGAGAGGGTCAGGTGAAGAGGGAGGGAGGGAGGG
AGGGAGAGAGGGAGGGGGGGGGGAAGGAGAGCAAGAAGAGGTTTTGAAGA
TAGCACCGACCATCCCCCTCCCCTCTGTTCCTCTGCAAACACACCCTCCG
AATTTCTAGGTGCACCTCCCTCCCTCTCGCCTCCTCCCCCACCTCACCCC
ATCCCTCCTATCGCTTCGCCTGCTCCTTCAATCTCGTCCCTTCCCTCGAC
CCCCCCCCCCCCTTCCTCGTCCTCCTCTTCAGCTAAGCTTCTCCTATTTG
GCGGAGCTAGCGCCGATGGCAATTTTCTAGGGGACACGTGGACCCTTGTC
CTCCCTCCCTCCATTCCTCCCTCCCTCCCTCCCTCCCTTCCTCCATGGCA
AGAATTTTCCACCACAGACGAAGATGAAGAAGAGTCAAACGAAGGGGAAG
CGAGAGCAGGAGGGAGGGAGAGGGAAAGGGTGCCTCCGGCACGCTGGGGG
CATAGCAGTGTGGTGGTGAAGGGGCAGGGAGGGAGGGAGGGAGGGCAGGA
GGGAGGCAGGGAGGCGAAGGTGCTGATTTTCGGAGGCTCGTGCCCCGGGG
AGGCGTTTGGGGAC
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Coding sequence (CDS) from alignment at scaffold_19:246497..248210-

>mRNA_7334 ID=mRNA_7334|Name=jgi.p|Nanoce1779_2|131608|organism=Nannochloropsis oceanica|type=CDS|length=2331bp|location=Sequence derived from alignment at scaffold_19:246497..248210- (Nannochloropsis oceanica)
GTGCACCTCCCTCCCTCTCGCCTCCTCCCCCACCTCACCCCATCCCTCCT
ATCGCTTCGCCTGCTCCTTCAATCTCGTCCCTTCCCTCGACCCCCCCCCC
CCCTTCCTCGTCCTCCTCTTCAGCTAAGACTGCCTACATGTTTGGAGGGA
TGGGTGGTGACGGCGTGCTGCACGATTTGTGGCAGCTGCAGCTTGAAGGG
AGGTGGGGGGAGAGGGTCAGATGGTTGACGACAACAACAACGACGACAAC
CCTTCCTACCCCCCCTCTATCCTGCAGTGGGTCCTACGGGCCTTCTCGCC
CACTGGGAAAAGCAGGAGGCATGGCAATGTCACCACCATTACCACCGCCA
CCACCAGCGCCACTACTGGCCCCCCTGGCCCCAGTCTCCTCAACGAATCC
ACATTTCCCTCGGACCTCCTCTTTCACACCCTCTCCTACCTTGACCTCCC
ATCTCTCCTCCGCTCCCTCGCCCCAGCCTGCCCCTCCTTCCACTCCCTCA
TTTCCTCCTCCCGACATGACATCCAATCTCTCTACCGCTGCCTTCTGCTC
AAGGAAGTAGGGGGGGACTTAGGCTGCCTTGGGACGTATGGGATCGACGA
CGTAAATTGGCGAGAAGTTCTAGGGATATGGTGGAGGGGAGAGTTGGCCT
GGGAGGAAGTCAAAGAAGACGACGGAGGGAGAGAGCGCGGAGCGGAGGGT
TTAGGAGGAGGAAGAGGAGGGGAAAGCATGTTGCCATCACGGTATCTTCA
TCGGATTGCCTCGTCGTCCACGAGTCGGTGCACCTCCCTCCCTCTCGCCT
CCTCCCCCACCTCACCCCATCCCTCCTATCGCTTCGCCTGCTCCTTCAAT
CTCGTCCCTTCCCTCGACCCCCCCCCCCCCTTCCTCGTCCTCCTCTTCAG
CTAAGACTGCCTACATGTTTGGAGGGATGGGTGGTGACGGCGTGCTGCAC
GATTTGTGGCAGCTGCAGCTTGAAGGGAGGTGGGGGGAGAGGGTCAGATG
GTTGACGACAACAACAACGACGACAACCCTTCCTACCCCCCCTCTATCCT
GCAGTGGGTCCTACGGGCCTTCTCGCCCACTGGGAAAAGCAGGAGGCATG
GCAATGTCACCACCATTACCACCGCCACCACCAGCGCCACTACTGGCCCC
CCTGGCCCCAGTCTCCTCAACGAATCCACATTTCCCTCGGACCTCCTCTT
TCACACCCTCTCCTACCTTGACCTCCCATCTCTCCTCCGCTCCCTCGCCC
CAGCCTGCCCCTCCTTCCACTCCCTCATTTCCTCCTCCCGACATGACATC
CAATCTCTCTACCGCTGCCTTCTGCTCAAGGAAGTAGGGGGGGACTTAGG
CTGCCTTGGGACGTATGGGATCGACGACGTAAATTGGCGAGAAGTTCTAG
GGATATGGTGGAGGGGAGAGTTGGCCTGGGAGGAAGTCAAAGAAGACGAC
GGAGGGAGAGAGCGCGGAGCGGAGGGTTTAGGAGGAGGAAGAGGAGGGGA
AAGCATGTTGCCATCACGGTATCTTCATCGGATTGCCTCGTCGTCCACGA
GTCGGTGCACCTCCCTCCCTCTCGCCTCCTCCCCCACCTCACCCCATCCC
TCCTATCGCTTCGCCTGCTCCTTCAATCTCGTCCCTTCCCTCGACCCCCC
CCCCCCCTTCCTCGTCCTCCTCTTCAGCTAAGACTGCCTACATGTTTGGA
GGGATGGGTGGTGACGGCGTGCTGCACGATTTGTGGCAGCTGCAGCTTGA
AGGGAGGTGGGGGGAGAGGGTCAGATGGTTGACGACAACAACAACGACGA
CAACCCTTCCTACCCCCCCTCTATCCTGCAGTGGGTCCTACGGGCCTTCT
CGCCCACTGGGAAAAGCAGGAGGCATGGCAATGTCACCACCATTACCACC
GCCACCACCAGCGCCACTACTGGCCCCCCTGGCCCCAGTCTCCTCAACGA
ATCCACATTTCCCTCGGACCTCCTCTTTCACACCCTCTCCTACCTTGACC
TCCCATCTCTCCTCCGCTCCCTCGCCCCAGCCTGCCCCTCCTTCCACTCC
CTCATTTCCTCCTCCCGACATGACATCCAATCTCTCTACCGCTGCCTTCT
GCTCAAGGAAGTAGGGGGGGACTTAGGCTGCCTTGGGACGTATGGGATCG
ACGACGTAAATTGGCGAGAAGTTCTAGGGATATGGTGGAGGGGAGAGTTG
GCCTGGGAGGAAGTCAAAGAAGACGACGGAGGGAGAGAGCGCGGAGCGGA
GGGTTTAGGAGGAGGAAGAGGAGGGGAAAGCATGTTGCCATCACGGTATC
TTCATCGGATTGCCTCGTCGTCCACGAGTCG
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Synonyms
Publications