jgi.p|Nanoce1779_2|598312, mRNA_7332 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598312
Unique Name	mRNA_7332
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1783
Alignment location	scaffold_19:235936..238450 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598398
Track	FilteredModels2
ProteinId	598312

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:235936..238450 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598312	gene_7332	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598312	mRNA_7332-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7332	CDS_7332	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:235936..238450-
coding sequence from alignment at scaffold_19:235936..238450-

mRNA sequence

>mRNA_7332 ID=mRNA_7332|Name=jgi.p|Nanoce1779_2|598312|organism=Nannochloropsis oceanica|type=mRNA|length=1783bp
GGGCGCGCTCCGCCCACAGGTAGGACTCCAAGAGAGCTCGGAAGCCGCCC
GAGGAGGAGGGAGGGAGGGCGGGCGGGCGGGAGGACGGGGTGGAGGGCGA
GGATGAGGGAGAGGTGAGGACAGGCTTGGTAATGATGTGCTGGGACTTGC
GTTGCCCGCCCAGGGAGAGGGAGAGGGAGGAAAGGGGGGAGGAAGGCGGG
GTGGGAAGGGTTTCCTTGCCGCTGCTGCTGCTGGGGTCGTTGTCGTCGTC
GCTGCTTATAGTGGTGGCGGCGACGGCAGAGGGAGCGGGGAGGAAAGCGA
AGGGGAGGTGCTGGGGGGCCTTGGATGAGTGCTCCCATTCCTTCATCACA
CGGTCCAGGATGCCGCCACCAGCGCAAGAGGAGGAGCGGGAGTGGGAGGG
TGAGGAAGGGGACGAGATGCAAAGGACATCACGAAAGTTTCCTAGAGCCG
GGAAGATCGGGCGCCTTCCCGTCGTCGCCGTCCGCAGCAGCCCTCCCTCG
AGCTCTCCCCCCCCTCCCTCCCTCCCCGCCGGAGCCAGCAGGATGGAGAC
ACACAGCACACAGCCCAAGGCCACTCCTAGAAGGAAGCAACACCCTCCCT
CTTTCGACAACCGCAGATTCCCTCCTTCCCTCCCTCCCTTAGCACTGCTG
CTGCTCTTGAAAGAGGTGTAGAGAAAGTGAGCGAAAGAGCGGTACAGGAC
CCGGAAATTGTCCAAGCTGATGACAGAGGAGTGGGAGGACGAGGAGAAGG
AAGAGATGGAGGGAGGAGAGGAGGGGCGAGGGGAGGAGGAGGGGGAGGAG
ATAGAGGAGAAGGAGGGGAGGGAAGAGGGCGGCATGACGTCCCGGAGGAA
ATCTGCAACGCTTGGAGGGTCAGGAGGGCCTTGCAGAAGCCCGTCCCCCC
CCGACTTCATCGAGGCCAAGGACGCCGCGGACGCTCCTCCCCCCCGCCCC
CTGCCCTGGCTTCGATGCGGGAGGTAGACCTCCCGGGAAAACTTGAAGGG
GGAGGAGGAAGGGGACAGGGAGGAGAGGGACGGCAGGGAGGGCAGCAGGG
AGGGAGGGAAGCGGAGAAGGGAGAGCTGGTCGCAGACGGACCGGCAGCGG
GCCTCCTGCTCTTGCGTGGCCAGCTCCTGCTCGCCGGTCTGAAAGTAGGA
GGGCAGGGGGACGGCGCCGGGAGGGGGGACATCCTGCGGGCGAATGCTGC
ACACCAAATACGACCCGTCTCGCTCCTCAAACACCTCCCCTTGCCCGTGC
TGCTCCTCCTGTCCTGCCCCTCCTCCTGTTCCCCCTCCCCAAACTTCCCA
TCCGGCCGTCGCCCTCTGCACGGGGGGCACGGGTGCTGAGTCTGCCAGCC
CATTCAAGGTTAGATTCTGATAGTGGTGGTACTGGTACCCTCCATGGTAC
ACCTCCCCCTCTGTGTCGCCTCCTTCCTGCTGCTTCTCCTGGTGCTGGTG
CTGGTGCTGGTGGTGATGGTGGTGCTGCTGCTCCATCGACAGGACCCGGC
CGAGGTTGTAAAATGCGTTGGATTCGAAGAGGGACGACGCCAGATATGGG
TGTTGCTCTTGTTGTGGCTGCGCGAGCTGTTGCTGCCGCTGTTTCTCCTC
CCTCTCCCCGTCTTCCAGTCGAGGTTGCTGCTGTTGCTGCTGCCGCTGCT
GCTGCGGCCCTCCACCCCAATAATCCCGGCTGTAAGACTTGTACATGATG
CTCTTTGGTCTTTCTTATCTGATGCCGAGATTTTTCTAGTCTTGGTCGCT
TGAATGACTAGGTGAGAAGAAAGAAGAAAAGAC

protein sequence of jgi.p|Nanoce1779_2|598312

>mRNA_7332-protein ID=mRNA_7332-protein|Name=jgi.p|Nanoce1779_2|598312|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MMCWDLRCPPREREREERGEEGGVGRVSLPLLLLGSLSSSLLIVVAATAE
GAGRKAKGRCWGALDECSHSFITRSRMPPPAQEEEREWEGEEGDEMQRTS
RKFPRAGKIGRLPVVAVRSSPPSSSPPPPSLPAGASRMETHSTQPKATPR
RKQHPPSFDNRRFPPSLPPLALLLLLKEV*

mRNA from alignment at scaffold_19:235936..238450-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7332 ID=mRNA_7332|Name=jgi.p|Nanoce1779_2|598312|organism=Nannochloropsis oceanica|type=mRNA|length=2515bp|location=Sequence derived from alignment at scaffold_19:235936..238450- (Nannochloropsis oceanica)
GGGCGCGCTCCGCCCACAGGTAGGACTCCAAGAGAGCTCGGAAGCCGCCC
GAGGAGGAGGGAGGGAGGGCGGGCGGGCGGGAGGACGGGGTGGAGGGCGA
GGATGAGGGAGAGGTGAGGACAGGCTTGGTAATGATGTGCTGGGACTTGC
GTTGCCCGCCCAGGGAGAGGGAGAGGGAGGAAAGGGGGGAGGAAGGCGGG
GTGGGAAGGGTTTCCTTGCCGCTGCTGCTGCTGGGGTCGTTGTCGTCGTC
GCTGCTTATAGTGGTGGCGGCGACGGCAGAGGGAGCTAGGGGAGAAAAGG
AGGGAGGGAAAGATGAGAAACAATAGGGCGATAGAGAAGTGCGGGCGGTC
GAGAGAGGGAGGGAGGTCGTACCGGGGAGGAAAGCGAAGGGGAGGTGCTG
GGGGGCCTTGGATGAGTGCTCCCATTCCTTCATCACACGGTCCAGGATGC
CGCCACCAGCGCAAGAGGAGGAGCGGGAGTGGGAGGGTGAGGAAGGGGAC
GAGATGCAAAGGACATCTGTGCGTGTAATTGTTGTGCGGCGAGGGAGAAC
GCCGCGTTGGTTTAGTTAGCACGATAACAAGAATCGGGAAAATCCTCCCT
CCTTCCCTCCCTCCCTCCCTCCCTCCCTCTCCCCCCCCTCTTTACCACGA
AAGTTTCCTAGAGCCGGGAAGATCGGGCGCCTTCCCGTCGTCGCCGTCCG
CAGCAGCCCTCCCTCGAGCTCTCCCCCCCCTCCCTCCCTCCCCGCCGGAG
CCAGCAGGATGGAGACACACAGCACACAGCCCAAGGCCACTCCTAGAAGG
AAGCAACACCCTCCCTCTTTCGACAACCGCAGATTCCCTCCTTCCCTCCC
TCCCTTAGCACTGCTGCTGCTCTTGAAAGAGGTGTAGAGAAAGTGAGCGA
AAGAGCGGTACAGGACCCGGAAATTGTCCAAGCTGATGACAGAGGAGTGG
GAGGACGAGGAGAAGGAAGAGATGGAGGGAGGAGAGGAGGGGCGAGGGGA
GGAGGAGGGGGAGGAGATAGAGGAGAAGGAGGGGAGGGAAGAGGGCGGCA
TGACGTCCCGGAGGAAATCTGCAACGCTTGGAGGGTCAGGAGGGCCTGCA
AGAAAGAAGGGAGGGAGGGAGGGAAAGAGGGACGGAGCGGTAGTGGTGTG
AGCAAAAAGGGGCAGAGAACATGACAACACGGAGGGAGGGAACTATAAAA
GCTTGGCCTGCAAGAAAGAAGGGAGGGAGGGAGGGAGGGAGGGACGGAGC
GGTAGTGGTGTGAGCAAAAAGGGGCAGAGAACATGACAACACGGAGAGAG
GGAACTGTAAAAGCTTTCTCAGTCGTTCCGTCCCTCCTTCCGTCCGTCCG
TCCGTCCGTCCGTCCGTCGTCCCGTACCTTGCAGAAGCCCGTCCCCCCCC
GACTTCATCGAGGCCAAGGACGCCGCGGACGCTCCTCCCCCCCGCCCCCT
GCCCTGGCTTCGATGCGGGAGGTAGACCTCCCGGGAAAACTTGAAGGGGG
AGGAGGAAGGGGACAGGGAGGAGAGGGACGGCAGGGAGGGCAGCAGGGAG
GGAGGGAAGCGGAGAAGGGAGAGCTGGTCGCAGACGGACCGGCAGCGGGC
CTCCTGCTCTTGCGTGGCCAGCTCCTGCTCGCCGGTCTGAAAGTAGGAGG
GCAGGGGGACGGCGCCGGGAGGGGGGACATCCTGATGGGAAGGGACAGAT
AGAAGGAAGGCAGAAGGGAAGGCGAGAAGGTGAGGGTTGGTGGAGACGAG
CACAAGGATGACAGGCCAGACCTGACTGGCGGCAGGAAAGCCAGCGGAGA
GAAGTGGGAGTAACCACGAGGTATCAGGCATTCGACATGCGGTTTCTTCT
TCCCCCATCCTCCTCCTCTTCCTCCTCTCTTCCTACACGCATTTTCCCCT
TCTCCTCCTCCGTACCTGCGGGCGAATGCTGCACACCAAATACGACCCGT
CTCGCTCCTCAAACACCTCCCCTTGCCCGTGCTGCTCCTCCTGTCCTGCC
CCTCCTCCTGTTCCCCCTCCCCAAACTTCCCATCCGGCCGTCGCCCTCTG
CACGGGGGGCACGGGTGCTGAGTCTGCCAGCCCATTCAAGGTTAGATTCT
GATAGTGGTGGTACTGGTACCCTCCATGGTACACCTCCCCCTCTGTGTCG
CCTCCTTCCTGCTGCTTCTCCTGGTGCTGGTGCTGGTGCTGGTGGTGATG
GTGGTGCTGCTGCTCCATCGACAGGACCCGGCCGAGGTTGTAAAATGCGT
TGGATTCGAAGAGGGACGACGCCAGATATGGGTGTTGCTCTTGTTGTGGC
TGCGCGAGCTGTTGCTGCCGCTGTTTCTCCTCCCTCTCCCCGTCTTCCAG
TCGAGGTTGCTGCTGTTGCTGCTGCCGCTGCTGCTGCGGCCCTCCACCCC
AATAATCCCGGCTGTAAGACTTGTACATGATGCTCTTTGGTCTTTCTTAT
CTGATGCCGAGATTTTTCTAGTCTTGGTCGCTTGAATGACTAGGTGAGAA
GAAAGAAGAAAAGAC

Coding sequence (CDS) from alignment at scaffold_19:235936..238450-

>mRNA_7332 ID=mRNA_7332|Name=jgi.p|Nanoce1779_2|598312|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at scaffold_19:235936..238450- (Nannochloropsis oceanica)
CACGAAAGTTTCCTAGAGCCGGGAAGATCGGGCGCCTTCCCGTCGTCGCC
GTCCGCAGCAGCCCTCCCTCGAGCTCTCCCCCCCCTCCCTCCCTCCCCGC
CGGAGCCAGCAGGATGGAGACACACAGCACACAGCCCAAGGCCACTCCTA
GAAGGAAGCAACACCCTCCCTCTTTCGACAACCGCAGATTCCCTCCTTCC
CTCCCTCCCTTAGCACTGCTGCTGCTCTTGAAAGAGGTGTAGCGGGGAGG
AAAGCGAAGGGGAGGTGCTGGGGGGCCTTGGATGAGTGCTCCCATTCCTT
CATCACACGGTCCAGGATGCCGCCACCAGCGCAAGAGGAGGAGCGGGAGT
GGGAGGGTGAGGAAGGGGACGAGATGCAAAGGACATATGATGTGCTGGGA
CTTGCGTTGCCCGCCCAGGGAGAGGGAGAGGGAGGAAAGGGGGGAGGAAG
GCGGGGTGGGAAGGGTTTCCTTGCCGCTGCTGCTGCTGGGGTCGTTGTCG
TCGTCGCTGCTTATAGTGGTGGCGGCGACGGCAGAGGGAGCACGAAAGTT
TCCTAGAGCCGGGAAGATCGGGCGCCTTCCCGTCGTCGCCGTCCGCAGCA
GCCCTCCCTCGAGCTCTCCCCCCCCTCCCTCCCTCCCCGCCGGAGCCAGC
AGGATGGAGACACACAGCACACAGCCCAAGGCCACTCCTAGAAGGAAGCA
ACACCCTCCCTCTTTCGACAACCGCAGATTCCCTCCTTCCCTCCCTCCCT
TAGCACTGCTGCTGCTCTTGAAAGAGGTGTAGCGGGGAGGAAAGCGAAGG
GGAGGTGCTGGGGGGCCTTGGATGAGTGCTCCCATTCCTTCATCACACGG
TCCAGGATGCCGCCACCAGCGCAAGAGGAGGAGCGGGAGTGGGAGGGTGA
GGAAGGGGACGAGATGCAAAGGACATATGATGTGCTGGGACTTGCGTTGC
CCGCCCAGGGAGAGGGAGAGGGAGGAAAGGGGGGAGGAAGGCGGGGTGGG
AAGGGTTTCCTTGCCGCTGCTGCTGCTGGGGTCGTTGTCGTCGTCGCTGC
TTATAGTGGTGGCGGCGACGGCAGAGGGAGCACGAAAGTTTCCTAGAGCC
GGGAAGATCGGGCGCCTTCCCGTCGTCGCCGTCCGCAGCAGCCCTCCCTC
GAGCTCTCCCCCCCCTCCCTCCCTCCCCGCCGGAGCCAGCAGGATGGAGA
CACACAGCACACAGCCCAAGGCCACTCCTAGAAGGAAGCAACACCCTCCC
TCTTTCGACAACCGCAGATTCCCTCCTTCCCTCCCTCCCTTAGCACTGCT
GCTGCTCTTGAAAGAGGTGTAGCGGGGAGGAAAGCGAAGGGGAGGTGCTG
GGGGGCCTTGGATGAGTGCTCCCATTCCTTCATCACACGGTCCAGGATGC
CGCCACCAGCGCAAGAGGAGGAGCGGGAGTGGGAGGGTGAGGAAGGGGAC
GAGATGCAAAGGACATATGATGTGCTGGGACTTGCGTTGCCCGCCCAGGG
AGAGGGAGAGGGAGGAAAGGGGGGAGGAAGGCGGGGTGGGAAGGGTTTCC
TTGCCGCTGCTGCTGCTGGGGTCGTTGTCGTCGTCGCTGCTTATAGTGGT
GGCGGCGACGGCAGAGGGAG

Synonyms

Publications