jgi.p|Nanoce1779_2|598266, mRNA_7325 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598266
Unique Name	mRNA_7325
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	925
Alignment location	scaffold_19:213977..214901 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598352
Track	FilteredModels2
ProteinId	598266

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:213977..214901 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598266	gene_7325	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598266	mRNA_7325-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7325	CDS_7325	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:213977..214901+
coding sequence from alignment at scaffold_19:213977..214901+

mRNA sequence

>mRNA_7325 ID=mRNA_7325|Name=jgi.p|Nanoce1779_2|598266|organism=Nannochloropsis oceanica|type=mRNA|length=925bp
ACAGTCTGGTTCGTATGTATCAGTCCGTTCATAATGATAGCTTGGAGTGG
AGTCACGTAGCGGCGCGCCGTGTCAGCCCCCGTTGGCCCTTCTACCCACT
CGCTAGCCTCCTCTTCGTCGTCGTGGATTTGCCATGGCTTTGGTTGAATG
CAGGGTCCGTGAGAACCATGATCGAGGATATCCAACAAGAGCCCTTTGTA
TTCAAAGTCTGGGCGGCGGTGCCCGTGTACGTTGCGTTGGCATTTCTCGT
CTCACGCGCCAACACGCGTGCAGAAGCATTTAGCCTTGGTTTGGCCTGTT
ATGCGGTATATGACTGGACAAACCTGAGTACCTTGTCGCAATATTCATGG
CGCTTTGCTTTAACCGATAGTCTATGGGGGGGCACATTGACGTGCATCGT
CTTCTCCGTACTGACGCACCCACGGGTGGCTCCAGTCTGGGGTCAATCTA
ATTAAATCCAAAGTTGTGATCGAAACAAAAATCTCATGGAGGGAATCGCC
GCGGTTCGTTGTTAAGGGCGGCGGGAGCCTTTGTTTCATGTAATTTCCAT
CTCACACTACCCAGAAATCATGCAATTCGGACGTGACTCCATAGACATTA
TGATCGAACGTGATCTAAATCGCGAGTGCTTTCTGATTTGGTTGTCCATT
CGTTGCAACAGTTTCAGAACAGACGGGTTATGACAGACACCTGAGCATGC
ACCTGGCGATTAAACGCGGTAGACTCGAAAGTTTCTCAACTTACTCCCTC
TACTCGGACCACAAAAGGTACCAAAAAGGGACTTTCTTCATCATGGAAAC
GGTTTTCTGAGTTGCATCTGTAAATTGATTGCATTATTGAGTATTATTGA
GTTCAGGTTTCATGCTTTGCTCTTGCTTTTGCTTTTGCTACTTCCTAAAG
TCAATCAAATTATACTCGTCCTCCG

protein sequence of jgi.p|Nanoce1779_2|598266

>mRNA_7325-protein ID=mRNA_7325-protein|Name=jgi.p|Nanoce1779_2|598266|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MYQSVHNDSLEWSHVAARRVSPRWPFYPLASLLFVVVDLPWLWLNAGSVR
TMIEDIQQEPFVFKVWAAVPVYVALAFLVSRANTRAEAFSLGLACYAVYD
WTNLSTLSQYSWRFALTDSLWGGTLTCIVFSVLTHPRVAPVWGQSN*

mRNA from alignment at scaffold_19:213977..214901+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7325 ID=mRNA_7325|Name=jgi.p|Nanoce1779_2|598266|organism=Nannochloropsis oceanica|type=mRNA|length=925bp|location=Sequence derived from alignment at scaffold_19:213977..214901+ (Nannochloropsis oceanica)
ACAGTCTGGTTCGTATGTATCAGTCCGTTCATAATGATAGCTTGGAGTGG
AGTCACGTAGCGGCGCGCCGTGTCAGCCCCCGTTGGCCCTTCTACCCACT
CGCTAGCCTCCTCTTCGTCGTCGTGGATTTGCCATGGCTTTGGTTGAATG
CAGGGTCCGTGAGAACCATGATCGAGGATATCCAACAAGAGCCCTTTGTA
TTCAAAGTCTGGGCGGCGGTGCCCGTGTACGTTGCGTTGGCATTTCTCGT
CTCACGCGCCAACACGCGTGCAGAAGCATTTAGCCTTGGTTTGGCCTGTT
ATGCGGTATATGACTGGACAAACCTGAGTACCTTGTCGCAATATTCATGG
CGCTTTGCTTTAACCGATAGTCTATGGGGGGGCACATTGACGTGCATCGT
CTTCTCCGTACTGACGCACCCACGGGTGGCTCCAGTCTGGGGTCAATCTA
ATTAAATCCAAAGTTGTGATCGAAACAAAAATCTCATGGAGGGAATCGCC
GCGGTTCGTTGTTAAGGGCGGCGGGAGCCTTTGTTTCATGTAATTTCCAT
CTCACACTACCCAGAAATCATGCAATTCGGACGTGACTCCATAGACATTA
TGATCGAACGTGATCTAAATCGCGAGTGCTTTCTGATTTGGTTGTCCATT
CGTTGCAACAGTTTCAGAACAGACGGGTTATGACAGACACCTGAGCATGC
ACCTGGCGATTAAACGCGGTAGACTCGAAAGTTTCTCAACTTACTCCCTC
TACTCGGACCACAAAAGGTACCAAAAAGGGACTTTCTTCATCATGGAAAC
GGTTTTCTGAGTTGCATCTGTAAATTGATTGCATTATTGAGTATTATTGA
GTTCAGGTTTCATGCTTTGCTCTTGCTTTTGCTTTTGCTACTTCCTAAAG
TCAATCAAATTATACTCGTCCTCCG

Coding sequence (CDS) from alignment at scaffold_19:213977..214901+

>mRNA_7325 ID=mRNA_7325|Name=jgi.p|Nanoce1779_2|598266|organism=Nannochloropsis oceanica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_19:213977..214901+ (Nannochloropsis oceanica)
ATGTATCAGTCCGTTCATAATGATAGCTTGGAGTGGAGTCACGTAGCGGC
GCGCCGTGTCAGCCCCCGTTGGCCCTTCTACCCACTCGCTAGCCTCCTCT
TCGTCGTCGTGGATTTGCCATGGCTTTGGTTGAATGCAGGGTCCGTGAGA
ACCATGATCGAGGATATCCAACAAGAGCCCTTTGTATTCAAAGTCTGGGC
GGCGGTGCCCGTGTACGTTGCGTTGGCATTTCTCGTCTCACGCGCCAACA
CGCGTGCAGAAGCATTTAGCCTTGGTTTGGCCTGTTATGCGGTATATGAC
TGGACAAACCTGAGTACCTTGTCGCAATATTCATGGCGCTTTGCTTTAAC
CGATAGTCTATGGGGGGGCACATTGACGTGCATCGTCTTCTCCGTACTGA
CGCACCCACGGGTGGCTCCAGTCTGGGGTCAATCTAATTAA

Synonyms

Publications