jgi.p|Nanoce1779_2|531369, mRNA_7323 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|531369
Unique NamemRNA_7323
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length405
Alignment locationscaffold_19:211800..212204 -

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Properties
Property NameValue
TranscriptId531455
TrackFilteredModels2
ProteinId531369
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:211800..212204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531369gene_7323Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7323CDS_7323Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531369mRNA_7323-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7323 ID=mRNA_7323|Name=jgi.p|Nanoce1779_2|531369|organism=Nannochloropsis oceanica|type=mRNA|length=405bp
GAAGCTCTTATTATCTCCGGCCTCCAGCACCCGAGCGTGCTACCCATCTA
CGGCATCTCTCTCGCACCCACAAACACGGTCTACCTTTTGAGCGAGCTAT
GTGTCTCGAATCTCGAGTCCCACGTCCTCTCAGACATCTGCTCCCCCTCT
GACGTCGCCCGCTCCTCCTTCGCCCTCCTTCAAGCCGTGGGCTTCCTGCT
CGCCAACGGCATTGTACACAGAGATCTGAAGCATTCCAATATCCTGCTTG
CAAGGGACGGCACCCTCAAGGTGGCAGATATGCGACACGCCCTACGCGTT
CAGACCCTTCCTTCCTTCCTCCCTCCCTCTTCTTTTCCAGATGCGGGAAC
CCCGCTCTACCTGGCACCGCGGAAGGATCGGTCGCGGCACGGCGCCAGGG
TCTAG
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protein sequence of jgi.p|Nanoce1779_2|531369

>mRNA_7323-protein ID=mRNA_7323-protein|Name=jgi.p|Nanoce1779_2|531369|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
EALIISGLQHPSVLPIYGISLAPTNTVYLLSELCVSNLESHVLSDICSPS
DVARSSFALLQAVGFLLANGIVHRDLKHSNILLARDGTLKVADMRHALRV
QTLPSFLPPSSFPDAGTPLYLAPRKDRSRHGARV*
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mRNA from alignment at scaffold_19:211800..212204-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7323 ID=mRNA_7323|Name=jgi.p|Nanoce1779_2|531369|organism=Nannochloropsis oceanica|type=mRNA|length=405bp|location=Sequence derived from alignment at scaffold_19:211800..212204- (Nannochloropsis oceanica)
GAAGCTCTTATTATCTCCGGCCTCCAGCACCCGAGCGTGCTACCCATCTA
CGGCATCTCTCTCGCACCCACAAACACGGTCTACCTTTTGAGCGAGCTAT
GTGTCTCGAATCTCGAGTCCCACGTCCTCTCAGACATCTGCTCCCCCTCT
GACGTCGCCCGCTCCTCCTTCGCCCTCCTTCAAGCCGTGGGCTTCCTGCT
CGCCAACGGCATTGTACACAGAGATCTGAAGCATTCCAATATCCTGCTTG
CAAGGGACGGCACCCTCAAGGTGGCAGATATGCGACACGCCCTACGCGTT
CAGACCCTTCCTTCCTTCCTCCCTCCCTCTTCTTTTCCAGATGCGGGAAC
CCCGCTCTACCTGGCACCGCGGAAGGATCGGTCGCGGCACGGCGCCAGGG
TCTAG
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Coding sequence (CDS) from alignment at scaffold_19:211800..212204-

>mRNA_7323 ID=mRNA_7323|Name=jgi.p|Nanoce1779_2|531369|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_19:211800..212204- (Nannochloropsis oceanica)
GAAGCTCTTATTATCTCCGGCCTCCAGCACCCGAGCGTGCTACCCATCTA
CGGCATCTCTCTCGCACCCACAAACACGGTCTACCTTTTGAGCGAGCTAT
GTGTCTCGAATCTCGAGTCCCACGTCCTCTCAGACATCTGCTCCCCCTCT
GACGTCGCCCGCTCCTCCTTCGCCCTCCTTCAAGCCGTGGGCTTCCTGCT
CGCCAACGGCATTGTACACAGAGATCTGAAGCATTCCAATATCCTGCTTG
CAAGGGACGGCACCCTCAAGGTGGCAGATATGCGACACGCCCTACGCGTT
CAGACCCTTCCTTCCTTCCTCCCTCCCTCTTCTTTTCCAGATGCGGGAAC
CCCGCTCTACCTGGCACCGCGGAAGGATCGGTCGCGGCACGGCGCCAGGG
TCTAG
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Synonyms
Publications