jgi.p|Nanoce1779_2|598252, mRNA_7320 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598252
Unique Name	mRNA_7320
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1825
Alignment location	scaffold_19:206807..208888 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598338
Track	FilteredModels2
ProteinId	598252

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:206807..208888 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598252	gene_7320	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598252	mRNA_7320-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7320	CDS_7320	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:206807..208888+
coding sequence from alignment at scaffold_19:206807..208888+

mRNA sequence

>mRNA_7320 ID=mRNA_7320|Name=jgi.p|Nanoce1779_2|598252|organism=Nannochloropsis oceanica|type=mRNA|length=1825bp
AGCCACAGTCAGCTCCACATGTACCTTTCAGCGTTCTAGATAATCTGGCC
AGGACTTTAAGTGGGCGAACGCCAAGTGCCTTGCTCTTATCCTCGCCCCG
CGTACCCCCATCATCCTCAATCACCGTGTCTTGGTGGAGAGCGTCTTCAT
AAGCCCACTGCCCTCAGGCACAAACATCTCTTCGCATACCTTACGACGAC
CATGACGAGGCGCCTATCAATCACCGACACGCAAGTGTGGGACCGCTTCG
AACGGTGCTATGAGGAAGCTATCACAATCCAAGGCCGGCACAGCTCTTTG
GCAGAGTTTCTGGTTCGGCAGCCCGCGGAGGAAGTGACTGCATTCTTCAC
TGACATCGTCGAGTTGCTTGAACGCCGAGGGATCGGTAATTAGACTCTTG
CTTTGGGAGGGAGGAAATGCATGATGCGTGAGAGATGGGGATTCGAGACC
GCGAGGCTTGATGTAGCATTGGAGGGCAGCGAAACGTTTGTGAACGACCC
CCTCTTCTCCCTTCCACTCTCTTTCCTTCTTTTGTCCCTTTCCTCCTCCT
CTTCCTTGCCCCAGAGAACTACCACCTCGTGCTCAAAACCGTGGAGGCGT
CAGTATCCCCGCGGGAGCTCCACCGGCAGCCGCAGCGGAAGGAGCAACGA
CGAGAGGACTCACATCGCAGCAGCACTATTAGTAGCATTAACAGCCACAC
TGGGGGCCACGGAGGAGTGAGAGATCAGAGGGAAGAACACCGGGGCCGAG
GCCGAAGACGATATAATGACACTAGAGACGGGAGTGGCGGCGGCCGTCAC
CACCGGCATCACTTTGAGGATAGGGGGGACAAGGATGACTACTACCGGCG
CCGGCTAAGGGATGCGAAGTGGGAGAATAACCGACGGCGTAGACGGGAGG
AAGAAGAGGAGTGCGAAAGGAGGGAGCAGGATGGAGGCCAAGGACGACAG
CGCCGCTGCAGCCGGAGCCGGAGCCGCAGTGGGGGTGCAAGCCGGGACCG
AAGGGGGAAGAGAGGGGGGCGAGAAAGCGGTGGATGTGGAAAAGCCAGAA
GGGGGCGTGGCGGAAAAAGCAGCATTAGCAGGCGTGGCAAGATGCAAGGA
CGCTCTCGTTCGCGCTCCAGCTCATCCCGCTCATCATTCTCATCTTACAG
CTCTCCCTCTTCTTCCTCCCCCCCCCGCCCCCGCCCTCTAGCTAGCCCCG
CCTCTACCTCTGGAGCGGCGGACAAGACGCAATGGTCGGTCGTGATTTAT
CATGGTGGTGAGGCGCGCAAGGACTTTTCAGGTCCGCTGGCGGCGTCGAG
TTGCATGTCGTGCGACCTGGACACGAGCATGCAGATGGGGCTGACTGGCG
ATGGGGATGGCGGGCTGCCGGCCGAGGCCTCGCTAATCTACGAAGATGCC
CACATGCGGTATTGGCACGACGCAAAGGGCCGGCCACTATTTGTTGTGAC
CCCACAACGCCATGTGCACAACCTCAAGGAGCTTACGGCCGCCGAGATGC
ACCGACTCTGGAGCGGCGCCGTGCAGATCCTGACCGACATGGGCTGCGAC
CCCAAGGAGGACATGCGCGACATGATACTCAACGCTGGCCTCGACCGCAA
CCACGCCCATCTCCATCTCAAAGTGCGCGTCACGGGCCGGGGTTTCGACC
GAGCCCGGGCCAAGTGGAGCCAGCGCCGGAACCGGCTGGTGGATGCTTTA
AAAGCCTTTGCTCGCAAGCAGGACTGCTGAAAGCGCGGAGGAGATGAAGC
CGCTGTAAACCAAGAGAGAAGATATTTCGACGATATACCATGTGCTAACG
AAGAAATAATGAAATACTTTTTAGA

protein sequence of jgi.p|Nanoce1779_2|598252

>mRNA_7320-protein ID=mRNA_7320-protein|Name=jgi.p|Nanoce1779_2|598252|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MQGRSRSRSSSSRSSFSSYSSPSSSSPPRPRPLASPASTSGAADKTQWSV
VIYHGGEARKDFSGPLAASSCMSCDLDTSMQMGLTGDGDGGLPAEASLIY
EDAHMRYWHDAKGRPLFVVTPQRHVHNLKELTAAEMHRLWSGAVQILTDM
GCDPKEDMRDMILNAGLDRNHAHLHLKVRVTGRGFDRARAKWSQRRNRLV
DALKAFARKQDC*

mRNA from alignment at scaffold_19:206807..208888+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7320 ID=mRNA_7320|Name=jgi.p|Nanoce1779_2|598252|organism=Nannochloropsis oceanica|type=mRNA|length=2082bp|location=Sequence derived from alignment at scaffold_19:206807..208888+ (Nannochloropsis oceanica)
AGCCACAGTCAGCTCCACATGTACCTTTCAGCGTTCTAGATAATCTGGCC
AGGACTTTAAGTGGGCGAACGCCAAGTGCCTTGCTCTTATCCTCGCCCCG
CGTACCCCCATCATCCTCAATCACCGTGTCTTGGTGGAGAGCGTCTTCAT
AAGCCCACTGCCCTCAGGCACAAACATCTCTTCGCATACCTTACGACGAC
CATGACGAGGCGCCTATCAATCACCGACACGCAAGTGTGGGACCGCTTCG
AACGGTGCTATGGTAAGCGAATGCTACAACACAGCAACGCTCAGAACTTG
TAGACAGCATATCGCTTGCTATGCTGGTCAAGGAAGCTTGAACGCCCACC
CCGAGCGCGGAGCTGAACCTAGAATTCTCCCAAGAAAGCAGGAAGCTAGT
TCTTTATTACAGCCACATCTCCGTGACCTTTACCTGCCGGACCGTGTTCT
GCACCAAGCAAACATTCCCTGTTTTTCAACACTCCCTTCCCCCCCCTGTC
AAACCAATCCCTTGCGCAGAGGAAGCTATCACAATCCAAGGCCGGCACAG
CTCTTTGGCAGAGTTTCTGGTTCGGCAGCCCGCGGAGGAAGTGACTGCAT
TCTTCACTGACATCGTCGAGTTGCTTGAACGCCGAGGGATCGGTAATTAG
ACTCTTGCTTTGGGAGGGAGGAAATGCATGATGCGTGAGAGATGGGGATT
CGAGACCGCGAGGCTTGATGTAGCATTGGAGGGCAGCGAAACGTTTGTGA
ACGACCCCCTCTTCTCCCTTCCACTCTCTTTCCTTCTTTTGTCCCTTTCC
TCCTCCTCTTCCTTGCCCCAGAGAACTACCACCTCGTGCTCAAAACCGTG
GAGGCGTCAGTATCCCCGCGGGAGCTCCACCGGCAGCCGCAGCGGAAGGA
GCAACGACGAGAGGACTCACATCGCAGCAGCACTATTAGTAGCATTAACA
GCCACACTGGGGGCCACGGAGGAGTGAGAGATCAGAGGGAAGAACACCGG
GGCCGAGGCCGAAGACGATATAATGACACTAGAGACGGGAGTGGCGGCGG
CCGTCACCACCGGCATCACTTTGAGGATAGGGGGGACAAGGATGACTACT
ACCGGCGCCGGCTAAGGGATGCGAAGTGGGAGAATAACCGACGGCGTAGA
CGGGAGGAAGAAGAGGAGTGCGAAAGGAGGGAGCAGGATGGAGGCCAAGG
ACGACAGCGCCGCTGCAGCCGGAGCCGGAGCCGCAGTGGGGGTGCAAGCC
GGGACCGAAGGGGGAAGAGAGGGGGGCGAGAAAGCGGTGGATGTGGAAAA
GCCAGAAGGGGGCGTGGCGGAAAAAGCAGCATTAGCAGGCGTGGCAAGAT
GCAAGGACGCTCTCGTTCGCGCTCCAGCTCATCCCGCTCATCATTCTCAT
CTTACAGCTCTCCCTCTTCTTCCTCCCCCCCCCGCCCCCGCCCTCTAGCT
AGCCCCGCCTCTACCTCTGGAGCGGCGGACAAGACGCAATGGTCGGTCGT
GATTTATCATGGTGGTGAGGCGCGCAAGGACTTTTCAGGTCCGCTGGCGG
CGTCGAGTTGCATGTCGTGCGACCTGGACACGAGCATGCAGATGGGGCTG
ACTGGCGATGGGGATGGCGGGCTGCCGGCCGAGGCCTCGCTAATCTACGA
AGATGCCCACATGCGGTATTGGCACGACGCAAAGGGCCGGCCACTATTTG
TTGTGACCCCACAACGCCATGTGCACAACCTCAAGGAGCTTACGGCCGCC
GAGATGCACCGACTCTGGAGCGGCGCCGTGCAGATCCTGACCGACATGGG
CTGCGACCCCAAGGAGGACATGCGCGACATGATACTCAACGCTGGCCTCG
ACCGCAACCACGCCCATCTCCATCTCAAAGTGCGCGTCACGGGCCGGGGT
TTCGACCGAGCCCGGGCCAAGTGGAGCCAGCGCCGGAACCGGCTGGTGGA
TGCTTTAAAAGCCTTTGCTCGCAAGCAGGACTGCTGAAAGCGCGGAGGAG
ATGAAGCCGCTGTAAACCAAGAGAGAAGATATTTCGACGATATACCATGT
GCTAACGAAGAAATAATGAAATACTTTTTAGA

Coding sequence (CDS) from alignment at scaffold_19:206807..208888+

>mRNA_7320 ID=mRNA_7320|Name=jgi.p|Nanoce1779_2|598252|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_19:206807..208888+ (Nannochloropsis oceanica)
ATGCAAGGACGCTCTCGTTCGCGCTCCAGCTCATCCCGCTCATCATTCTC
ATCTTACAGCTCTCCCTCTTCTTCCTCCCCCCCCCGCCCCCGCCCTCTAG
CTAGCCCCGCCTCTACCTCTGGAGCGGCGGACAAGACGCAATGGTCGGTC
GTGATTTATCATGGTGGTGAGGCGCGCAAGGACTTTTCAGGTCCGCTGGC
GGCGTCGAGTTGCATGTCGTGCGACCTGGACACGAGCATGCAGATGGGGC
TGACTGGCGATGGGGATGGCGGGCTGCCGGCCGAGGCCTCGCTAATCTAC
GAAGATGCCCACATGCGGTATTGGCACGACGCAAAGGGCCGGCCACTATT
TGTTGTGACCCCACAACGCCATGTGCACAACCTCAAGGAGCTTACGGCCG
CCGAGATGCACCGACTCTGGAGCGGCGCCGTGCAGATCCTGACCGACATG
GGCTGCGACCCCAAGGAGGACATGCGCGACATGATACTCAACGCTGGCCT
CGACCGCAACCACGCCCATCTCCATCTCAAAGTGCGCGTCACGGGCCGGG
GTTTCGACCGAGCCCGGGCCAAGTGGAGCCAGCGCCGGAACCGGCTGGTG
GATGCTTTAAAAGCCTTTGCTCGCAAGCAGGACTGCTGA

Synonyms

Publications