jgi.p|Nanoce1779_2|598248, mRNA_7319 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598248
Unique Name	mRNA_7319
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1125
Alignment location	scaffold_19:204700..206664 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598334
Track	FilteredModels2
ProteinId	598248

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:204700..206664 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598248	gene_7319	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598248	mRNA_7319-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7319	CDS_7319	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:204700..206664-
coding sequence from alignment at scaffold_19:204700..206664-

mRNA sequence

>mRNA_7319 ID=mRNA_7319|Name=jgi.p|Nanoce1779_2|598248|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
ACAGGCAAGGGACGGATCCAAACGCTTGTGGCAGGGCCCCATCCCCCGCT
CCGCCACTTCTTCGGCTGCCCCACTCTCTGCGTCCTGCCCAAGCACGCGA
ATACCTCATCCCACCCCCCTTCATCTCTCGCTCTTACGCCCGTAAGCCCT
CGCGGAAACAGCAGCAGCCACAGCAGCAGCACAACTTTCCTATTCCTAAG
TCCCTAGACGCATAATCATGGGTGATTTTTCACGCATTCGGAAGGAGTTG
AATGAGTGCGCCCGCGACCAAAAGTCAGGCGTCACGGCTAGTCCAGTAGG
CTCGAGCTTGAACCATTTGTCCGGGACCATCACGGGGCCCGACGGTACGC
CGTACGCCAAAGGCGTCTTCAAAATTGACATCCACATCCCAACCTCCTAC
CCCTTCGAGCCGCCCAAGATGAAGTTCCTGACCAAGATATGGCACCCTAA
CATATCTTCGCAGTCCGGCGCCATATGCCTGGATATCCTGAAAGACCAGT
GGTCGCCCGCCCTCACCATCAAAACTGCCCTCATCTCCCTACAAGCCCTA
CTCTGTACTCCCCAGCCGGACGACCCTCAAGACGCGGAGGTGGCGTCGAT
GTACCTGAACAACCAGGAGCAGTTTCTGCACACAGCCAAGTTCTGGACAG
AGACGTATGCCAGACCCGAGGCCTCCCACGACGAGGTGGTGGATCGCCTG
AAAGACATGGGATTCTCTGAGACGGCGGCGCGAAAGGCCCTGGAAGACAG
CAACTGGGACGAGACGGCTGCAGTAAATGCATTGCTGAGCAGCTAAAGGA
TAGGTAAAGGAAGGAAGGCCAGAAGAAGACAAGAGGACGAGAAAGGTAGT
GCTAGGATTATGGCAAGAATGGAAAAAAAGTGGAATCGGATACACAAGAA
AGATCTGAAAGAGTGTGAAGGGAAAATGATGCAGCGACAGATGGTCAGGA
ACAGCGCATGTGTTTATATGATAAAGAGAAGAGAAGCGTCAGCAGTAGAA
GTAGAAAAGAGATAGAGAGTCCGCAATAACAGCAAAGCCATAAGTGTGAG
CGCGAGTGACTGTGTCTTTTGTAGGGATCGTCTTTTCAGTAAAAGAATCA
AGCAGCATCGGAGGGGCACGCCAAA

protein sequence of jgi.p|Nanoce1779_2|598248

>mRNA_7319-protein ID=mRNA_7319-protein|Name=jgi.p|Nanoce1779_2|598248|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MGDFSRIRKELNECARDQKSGVTASPVGSSLNHLSGTITGPDGTPYAKGV
FKIDIHIPTSYPFEPPKMKFLTKIWHPNISSQSGAICLDILKDQWSPALT
IKTALISLQALLCTPQPDDPQDAEVASMYLNNQEQFLHTAKFWTETYARP
EASHDEVVDRLKDMGFSETAARKALEDSNWDETAAVNALLSS*

mRNA from alignment at scaffold_19:204700..206664-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7319 ID=mRNA_7319|Name=jgi.p|Nanoce1779_2|598248|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp|location=Sequence derived from alignment at scaffold_19:204700..206664- (Nannochloropsis oceanica)
ACAGGCAAGGGACGGATCCAAACGCTTGTGGCAGGGCCCCATCCCCCGCT
CCGCCACTTCTTCGGCTGCCCCACTCTCTGCGTCCTGCCCAAGCACGCGA
ATACCTCATCCCACCCCCCTTCATCTCTCGCTCTTACGCCCGTAAGCCCT
CGCGGAAACAGCAGCAGCCACAGCAGCAGCACAACTTTCCTATTCCTAAG
TCCCTAGACGCATAATCATGGGTGATTTTTCACGCATTCGGAAGGAGTTG
AATGAGTGCGCCCGCGACCAAAAGTCAGGCGTCACGGCTAGGTAGGTGGA
TGGGTTCAAGAGCATTGCATTTGAAGCTTGGGGTTTAACATGAAAAATAG
GGGAGTCTGAGATGATGTGCAGTCCCTGTTAATGCGATAACAAGCAATCA
TGCTGCCCGTGGGTCCTCCTTCCTCTTTCTCTGGTGAAGGGAGCGTACGT
GCTCGGTGGGACAAATCGCACTAAAACGCACCTCTAAATGCATAACTCCT
TCCAGAAAAGCTCATGGTAAGCATTCCCCACTCTCCACCTTTTCTCCTGG
AAATGGTCATTCCCACCAACAGTCCAGTAGGCTCGAGCTTGAACCATTTG
TCCGGGACCATCACGGGGCCCGACGGTACGCCGTACGCCAAAGGCGTCTT
CAAAATTGACATCCACATCCCAACCTCCTACCCCTTCGAGCCGCCCAAGA
TGAAGTTCCTGACCAAGATATGGTGCGTGGACAGAGCAGAGACACAGAAG
GAGTGTCAGAGGCGGAGACATAGTAGAAGGGGAAGAGGGAAATGTTGGGA
AGGCCTTTCGTTGGGGGATGTTTTGGACCACTTTTTCTTCCTCTGAGTCC
GAGTTGCCCATAACTTCCCCCCTCTCGCTTCCCATCCTCCCTCCTCCCTC
CCTCCCTCCCTGGCAGGCACCCTAACATATCTTCGCAGTCCGGCGCCATA
TGCCTGGATATCCTGAAAGACCAGTGGTCGCCCGCCCTCACCATCAAAAC
TGCCCTCATCTCCCTACAAGCCCTACTCTGTACTCCCCAGCCGGTAAGGA
CGGAGGAGGAAGGAGGGATGGGTGCAAGGGCGGGATCGTGGTAAGGTGAC
ATAAGATTCTTCAAGGCGAAGGGAAACTTTGAGAGCCCAGGGAACACCGG
CATGCCAGCTCTTCCTCATTGCATTTGCTCTCGGCCCCGTCTCACCATCC
CCATGTTCGCATCGCAGGACGACCCTCAAGACGCGGAGGTGGCGTCGATG
TACCTGAACAACCAGGAGCAGTTTCTGCACACAGCCAAGTTCTGGACAGA
GACGTATGCCAGACCCGAGGCCTCCCACGACGAGGTGTGTGAAAAGGGGG
AGGAGGAAAAGAGGGAGGGAGAGGGCGAATTTCGGACGTTTGGAAATTTG
GTAGGTCCTGCGAGAACCTTTGGCAATTTAGCCCATTATCTTATGACGAT
GATGAAGGCCTTGAGCTTTCTCTGACAATAGAGTGAACTCTCTCACGTCT
CTGCTTCCCTCCCTCTCGCTTGCAGGTGGTGGATCGCCTGAAAGACATGG
GATTCTCTGAGACGGCGGCGCGAAAGGCCCTGGAAGACAGCAACTGGGAC
GAGACGGCTGCAGTAAATGCATTGCTGAGCAGCTAAAGGATAGGTAAAGG
AAGGAAGGCCAGAAGAAGACAAGAGGACGAGAAAGGTAGTGCTAGGATTA
TGGCAAGAATGGAAAAAAAGTGGAATCGGATACACAAGAAAGATCTGAAA
GAGTGTGAAGGGAAAATGATGCAGCGACAGATGGTCAGGAACAGCGCATG
TGTTTATATGATAAAGAGAAGAGAAGCGTCAGCAGTAGAAGTAGAAAAGA
GATAGAGAGTCCGCAATAACAGCAAAGCCATAAGTGTGAGCGCGAGTGAC
TGTGTCTTTTGTAGGGATCGTCTTTTCAGTAAAAGAATCAAGCAGCATCG
GAGGGGCACGCCAAA

Coding sequence (CDS) from alignment at scaffold_19:204700..206664-

>mRNA_7319 ID=mRNA_7319|Name=jgi.p|Nanoce1779_2|598248|organism=Nannochloropsis oceanica|type=CDS|length=2895bp|location=Sequence derived from alignment at scaffold_19:204700..206664- (Nannochloropsis oceanica)
GTGGTGGATCGCCTGAAAGACATGGGATTCTCTGAGACGGCGGCGCGAAA
GGCCCTGGAAGACAGCAACTGGGACGAGACGGCTGCAGTAAATGCATTGC
TGAGCAGCTAAGACGACCCTCAAGACGCGGAGGTGGCGTCGATGTACCTG
AACAACCAGGAGCAGTTTCTGCACACAGCCAAGTTCTGGACAGAGACGTA
TGCCAGACCCGAGGCCTCCCACGACGAGGCACCCTAACATATCTTCGCAG
TCCGGCGCCATATGCCTGGATATCCTGAAAGACCAGTGGTCGCCCGCCCT
CACCATCAAAACTGCCCTCATCTCCCTACAAGCCCTACTCTGTACTCCCC
AGCCGTCCAGTAGGCTCGAGCTTGAACCATTTGTCCGGGACCATCACGGG
GCCCGACGGTACGCCGTACGCCAAAGGCGTCTTCAAAATTGACATCCACA
TCCCAACCTCCTACCCCTTCGAGCCGCCCAAGATGAAGTTCCTGACCAAG
ATATGATGGGTGATTTTTCACGCATTCGGAAGGAGTTGAATGAGTGCGCC
CGCGACCAAAAGTCAGGCGTCACGGCTAGGTGGTGGATCGCCTGAAAGAC
ATGGGATTCTCTGAGACGGCGGCGCGAAAGGCCCTGGAAGACAGCAACTG
GGACGAGACGGCTGCAGTAAATGCATTGCTGAGCAGCTAAGACGACCCTC
AAGACGCGGAGGTGGCGTCGATGTACCTGAACAACCAGGAGCAGTTTCTG
CACACAGCCAAGTTCTGGACAGAGACGTATGCCAGACCCGAGGCCTCCCA
CGACGAGGCACCCTAACATATCTTCGCAGTCCGGCGCCATATGCCTGGAT
ATCCTGAAAGACCAGTGGTCGCCCGCCCTCACCATCAAAACTGCCCTCAT
CTCCCTACAAGCCCTACTCTGTACTCCCCAGCCGTCCAGTAGGCTCGAGC
TTGAACCATTTGTCCGGGACCATCACGGGGCCCGACGGTACGCCGTACGC
CAAAGGCGTCTTCAAAATTGACATCCACATCCCAACCTCCTACCCCTTCG
AGCCGCCCAAGATGAAGTTCCTGACCAAGATATGATGGGTGATTTTTCAC
GCATTCGGAAGGAGTTGAATGAGTGCGCCCGCGACCAAAAGTCAGGCGTC
ACGGCTAGGTGGTGGATCGCCTGAAAGACATGGGATTCTCTGAGACGGCG
GCGCGAAAGGCCCTGGAAGACAGCAACTGGGACGAGACGGCTGCAGTAAA
TGCATTGCTGAGCAGCTAAGACGACCCTCAAGACGCGGAGGTGGCGTCGA
TGTACCTGAACAACCAGGAGCAGTTTCTGCACACAGCCAAGTTCTGGACA
GAGACGTATGCCAGACCCGAGGCCTCCCACGACGAGGCACCCTAACATAT
CTTCGCAGTCCGGCGCCATATGCCTGGATATCCTGAAAGACCAGTGGTCG
CCCGCCCTCACCATCAAAACTGCCCTCATCTCCCTACAAGCCCTACTCTG
TACTCCCCAGCCGTCCAGTAGGCTCGAGCTTGAACCATTTGTCCGGGACC
ATCACGGGGCCCGACGGTACGCCGTACGCCAAAGGCGTCTTCAAAATTGA
CATCCACATCCCAACCTCCTACCCCTTCGAGCCGCCCAAGATGAAGTTCC
TGACCAAGATATGATGGGTGATTTTTCACGCATTCGGAAGGAGTTGAATG
AGTGCGCCCGCGACCAAAAGTCAGGCGTCACGGCTAGGTGGTGGATCGCC
TGAAAGACATGGGATTCTCTGAGACGGCGGCGCGAAAGGCCCTGGAAGAC
AGCAACTGGGACGAGACGGCTGCAGTAAATGCATTGCTGAGCAGCTAAGA
CGACCCTCAAGACGCGGAGGTGGCGTCGATGTACCTGAACAACCAGGAGC
AGTTTCTGCACACAGCCAAGTTCTGGACAGAGACGTATGCCAGACCCGAG
GCCTCCCACGACGAGGCACCCTAACATATCTTCGCAGTCCGGCGCCATAT
GCCTGGATATCCTGAAAGACCAGTGGTCGCCCGCCCTCACCATCAAAACT
GCCCTCATCTCCCTACAAGCCCTACTCTGTACTCCCCAGCCGTCCAGTAG
GCTCGAGCTTGAACCATTTGTCCGGGACCATCACGGGGCCCGACGGTACG
CCGTACGCCAAAGGCGTCTTCAAAATTGACATCCACATCCCAACCTCCTA
CCCCTTCGAGCCGCCCAAGATGAAGTTCCTGACCAAGATATGATGGGTGA
TTTTTCACGCATTCGGAAGGAGTTGAATGAGTGCGCCCGCGACCAAAAGT
CAGGCGTCACGGCTAGGTGGTGGATCGCCTGAAAGACATGGGATTCTCTG
AGACGGCGGCGCGAAAGGCCCTGGAAGACAGCAACTGGGACGAGACGGCT
GCAGTAAATGCATTGCTGAGCAGCTAAGACGACCCTCAAGACGCGGAGGT
GGCGTCGATGTACCTGAACAACCAGGAGCAGTTTCTGCACACAGCCAAGT
TCTGGACAGAGACGTATGCCAGACCCGAGGCCTCCCACGACGAGGCACCC
TAACATATCTTCGCAGTCCGGCGCCATATGCCTGGATATCCTGAAAGACC
AGTGGTCGCCCGCCCTCACCATCAAAACTGCCCTCATCTCCCTACAAGCC
CTACTCTGTACTCCCCAGCCGTCCAGTAGGCTCGAGCTTGAACCATTTGT
CCGGGACCATCACGGGGCCCGACGGTACGCCGTACGCCAAAGGCGTCTTC
AAAATTGACATCCACATCCCAACCTCCTACCCCTTCGAGCCGCCCAAGAT
GAAGTTCCTGACCAAGATATGATGGGTGATTTTTCACGCATTCGGAAGGA
GTTGAATGAGTGCGCCCGCGACCAAAAGTCAGGCGTCACGGCTAG

Synonyms

Publications