jgi.p|Nanoce1779_2|558460, mRNA_7318 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|558460
Unique NamemRNA_7318
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length804
Alignment locationscaffold_19:201328..202365 -

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Properties
Property NameValue
TranscriptId558546
TrackFilteredModels2
ProteinId558460
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:201328..202365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558460gene_7318Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558460mRNA_7318-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7318CDS_7318Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7318 ID=mRNA_7318|Name=jgi.p|Nanoce1779_2|558460|organism=Nannochloropsis oceanica|type=mRNA|length=804bp
ATGGCTGACAGCCCTCAGCACCTACGGCCCGCGTCTACCCGGCTCCCCGT
GCTGTTATACATCCCCAATTTAATTTGCTACAGTCGACTGGTACTTAGCT
TTTACGGCCTCAATGGGACGGCTTTCCTGCGGAGCGCTGAACCGGACTTG
CTGGCGGCTCTGCTGGTGTTTGTTATCGATGTCGCCTTAGATTCCTTGGA
TGGATATGTAGCTAGGCGCCTGAATCAGACATCTCAGCTAGGTGCGATGC
TTGACATTTTCGCTGACAACGTTCTGAGGAGCTGTATGTGGGTATCGTCG
GCACTGCTTGACGCCCGCCTGGCTCTCCCTGCTCTGCTTTGCCTCTCTGT
TGAGTGGGCCACACTCTTGGCAACGCAACTGGTAGTGCAGCGGGAGGACG
GCCGACACTGGAAAATGCTACGGGATGCAGATCCACGCCTGGTGCAATAT
TTCTTCTCGAACAACTTCCGGAATGCGCTTGGGATGTGGGGCATTGGCAG
CCTGTTTCTCGCCCCCCTCTACCCCTTGCTCCTCCATGCAGTCCCCGCGC
TTGGCCACATGGGAATCACCGGTTTACAAATGGAGGGAAGAGGGGACAGA
TGGGGGCAAGATGGGGGATTAGGCGCAAAAGTTGTTTGGGGATTGGGGTC
AGTGCTCGTAGCGGGACGCATCTTATCACTCGCGATTGAGTTGTACTTCG
TGTGGGGCTTGGTGGTGGTGCTGGTGGAGGAGGAGGAGGAGGAGGGGAGG
TGGGTACGGAAGGTGGGTGGCGCAGTCCTGGGGGAGCGGCACAAGGTGGC
TTGA
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protein sequence of jgi.p|Nanoce1779_2|558460

>mRNA_7318-protein ID=mRNA_7318-protein|Name=jgi.p|Nanoce1779_2|558460|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MADSPQHLRPASTRLPVLLYIPNLICYSRLVLSFYGLNGTAFLRSAEPDL
LAALLVFVIDVALDSLDGYVARRLNQTSQLGAMLDIFADNVLRSCMWVSS
ALLDARLALPALLCLSVEWATLLATQLVVQREDGRHWKMLRDADPRLVQY
FFSNNFRNALGMWGIGSLFLAPLYPLLLHAVPALGHMGITGLQMEGRGDR
WGQDGGLGAKVVWGLGSVLVAGRILSLAIELYFVWGLVVVLVEEEEEEGR
WVRKVGGAVLGERHKVA*
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mRNA from alignment at scaffold_19:201328..202365-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7318 ID=mRNA_7318|Name=jgi.p|Nanoce1779_2|558460|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp|location=Sequence derived from alignment at scaffold_19:201328..202365- (Nannochloropsis oceanica)
ATGGCTGACAGCCCTCAGCACCTACGGCCCGCGTCTACCCGGCTCCCCGT
GCTGTTATACATCCCCAATTTAATTTGCTACAGTCGACTGGTACTTAGCT
TTTACGGCCTGTCTATCGTTGCCCACACGGTGACGCGGCAGCAGGAAGAT
GCCCGGCATGCAGCACACGACGGCGGGTCATCTTGCTCGGTGCAGGCCAT
GATGCAGACTGCCACCTTTTACGCCACGCAAGTCAGCAATACGGGCTTGT
TACCGCATGCCGCCAACACTCTCCTAGGTAAGGGGTTGGACCATCTTTCC
GCCGCCCTTGTAGATGATGGTAACCGGCAGAAGGCCAATAACAGCAATGG
GACGGCTTTCCTGCGGAGCGCTGAACCGGACTTGCTGGCGGCTCTGCTGG
TGTTTGTTATCGATGTCGCCTTAGATTCCTTGGATGGATATGTAGCTAGG
CGCCTGAATCAGACATCTCAGCTAGGTGCGATGCTTGACATTTTCGCTGA
CAACGTTCTGAGGAGCTGTATGTGGGTATCGTCGGCACTGCTTGACGCCC
GCCTGGCTCTCCCTGCTCTGCTTTGCCTCTCTGTTGAGTGGGCCACACTC
TTGGCAACGCAACTGGTAGTGCAGCGGGAGGACGGCCGACACTGGAAAAT
GCTACGGGATGCAGATCCACGCCTGGTGCAATATTTCTTCTCGAACAACT
TCCGGAATGCGCTTGGGATGTGGGGCATTGGCAGCCTGTTTCTCGCCCCC
CTCTACCCCTTGCTCCTCCATGCAGTCCCCGCGCTTGGCCACATGGGAAT
CACCGGTTTACAAATGGAGGGAAGAGGGGACAGATGGGGGCAAGATGGGG
GATTAGGCGCAAAAGTTGTTTGGGGATTGGGGTCAGTGCTCGTAGCGGGA
CGCATCTTATCACTCGCGATTGAGTTGTACTTCGTGTGGGGCTTGGTGGT
GGTGCTGGTGGAGGAGGAGGAGGAGGAGGGGAGGTGGGTACGGAAGGTGG
GTGGCGCAGTCCTGGGGGAGCGGCACAAGGTGGCTTGA
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Coding sequence (CDS) from alignment at scaffold_19:201328..202365-

>mRNA_7318 ID=mRNA_7318|Name=jgi.p|Nanoce1779_2|558460|organism=Nannochloropsis oceanica|type=CDS|length=1608bp|location=Sequence derived from alignment at scaffold_19:201328..202365- (Nannochloropsis oceanica)
CAATGGGACGGCTTTCCTGCGGAGCGCTGAACCGGACTTGCTGGCGGCTC
TGCTGGTGTTTGTTATCGATGTCGCCTTAGATTCCTTGGATGGATATGTA
GCTAGGCGCCTGAATCAGACATCTCAGCTAGGTGCGATGCTTGACATTTT
CGCTGACAACGTTCTGAGGAGCTGTATGTGGGTATCGTCGGCACTGCTTG
ACGCCCGCCTGGCTCTCCCTGCTCTGCTTTGCCTCTCTGTTGAGTGGGCC
ACACTCTTGGCAACGCAACTGGTAGTGCAGCGGGAGGACGGCCGACACTG
GAAAATGCTACGGGATGCAGATCCACGCCTGGTGCAATATTTCTTCTCGA
ACAACTTCCGGAATGCGCTTGGGATGTGGGGCATTGGCAGCCTGTTTCTC
GCCCCCCTCTACCCCTTGCTCCTCCATGCAGTCCCCGCGCTTGGCCACAT
GGGAATCACCGGTTTACAAATGGAGGGAAGAGGGGACAGATGGGGGCAAG
ATGGGGGATTAGGCGCAAAAGTTGTTTGGGGATTGGGGTCAGTGCTCGTA
GCGGGACGCATCTTATCACTCGCGATTGAGTTGTACTTCGTGTGGGGCTT
GGTGGTGGTGCTGGTGGAGGAGGAGGAGGAGGAGGGGAGGTGGGTACGGA
AGGTGGGTGGCGCAGTCCTGGGGGAGCGGCACAAGGTGGCTTGAATGGCT
GACAGCCCTCAGCACCTACGGCCCGCGTCTACCCGGCTCCCCGTGCTGTT
ATACATCCCCAATTTAATTTGCTACAGTCGACTGGTACTTAGCTTTTACG
GCCTCAATGGGACGGCTTTCCTGCGGAGCGCTGAACCGGACTTGCTGGCG
GCTCTGCTGGTGTTTGTTATCGATGTCGCCTTAGATTCCTTGGATGGATA
TGTAGCTAGGCGCCTGAATCAGACATCTCAGCTAGGTGCGATGCTTGACA
TTTTCGCTGACAACGTTCTGAGGAGCTGTATGTGGGTATCGTCGGCACTG
CTTGACGCCCGCCTGGCTCTCCCTGCTCTGCTTTGCCTCTCTGTTGAGTG
GGCCACACTCTTGGCAACGCAACTGGTAGTGCAGCGGGAGGACGGCCGAC
ACTGGAAAATGCTACGGGATGCAGATCCACGCCTGGTGCAATATTTCTTC
TCGAACAACTTCCGGAATGCGCTTGGGATGTGGGGCATTGGCAGCCTGTT
TCTCGCCCCCCTCTACCCCTTGCTCCTCCATGCAGTCCCCGCGCTTGGCC
ACATGGGAATCACCGGTTTACAAATGGAGGGAAGAGGGGACAGATGGGGG
CAAGATGGGGGATTAGGCGCAAAAGTTGTTTGGGGATTGGGGTCAGTGCT
CGTAGCGGGACGCATCTTATCACTCGCGATTGAGTTGTACTTCGTGTGGG
GCTTGGTGGTGGTGCTGGTGGAGGAGGAGGAGGAGGAGGGGAGGTGGGTA
CGGAAGGTGGGTGGCGCAGTCCTGGGGGAGCGGCACAAGGTGGCTTGAAT
GGCTGACAGCCCTCAGCACCTACGGCCCGCGTCTACCCGGCTCCCCGTGC
TGTTATACATCCCCAATTTAATTTGCTACAGTCGACTGGTACTTAGCTTT
TACGGCCT
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Synonyms
Publications