jgi.p|Nanoce1779_2|598224, mRNA_7316 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598224
Unique NamemRNA_7316
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1041
Alignment locationscaffold_19:194823..196257 -

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Properties
Property NameValue
TranscriptId598310
TrackFilteredModels2
ProteinId598224
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:194823..196257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598224gene_7316Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598224mRNA_7316-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7316CDS_7316Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7316 ID=mRNA_7316|Name=jgi.p|Nanoce1779_2|598224|organism=Nannochloropsis oceanica|type=mRNA|length=1041bp
ACAGCCTCGTAACCCTGTGCCCCGTGCGATGGTCCAATTATCCTTATCCG
TCGTCAGCCGCAGCCGTCGACGGTGGTCTATCCTTCTCCTGGTGCTCGTG
TTACTCTTGCTAGTCGGAAACTCGACTGCAAAGCCCAACCAGGCCAAGAA
AACGAAAGCGAATGCCGCGACCACTGACAAAGAAGAGCGGTCGCAGGCGC
AGGGGGGGAGACAGAATGCTCAGCTACAAGGGAAGAAGCCGCAGCAGCAC
AAGGCGCAGATGAAGCTGCAGCAACAGAAGCAGCAAAAGGCCAAGCGAGA
GACCCGGGCCAGCGACGCCACGATGGAGGACACGAAGGAGAACAGACAAT
ACCATGCCGCCCGCGTTATGCAGGGTACGCCTTTGATCGAGACGCTTGAA
GGTCTCGTCCAAGAAGCGGCGCGAGTCAAAGGCCCAGATGCCGCCGATAA
AATTAGGCAGGCCATCCGCAAATCAGACACGCGGGCATTGAGCCAGGTGA
TGCAAAACGCTTACGCCAGCACCTTCACGGTAGATGAGCTTGCTTTCATA
GCAGATTATAGCAATTCTGAGATCGGAAAACGCGTGCAGCGGAAGATGAG
TCAATACGTCGCCAAGGTCAATCCCGCGATGGAGGCCTTCACGAAGGAGG
TATTCTCCGGCCAGGCCGTACAAGGAGAGAGCCAGCAGAGAGGGGACCGA
GGGTCTCAGTGGCAGCACCAGCAAGCGACTCACATCTCCGAGAAAGGCAC
CACCATCATCATGAACGGCGAGAAAGCCAAGCAAAAGAAGGAAAGGGAAG
CAGCAGAAGCCGCGGCCGCTGCGAAAGGGATGGGGAAAGGCGCTCGAAGT
CCCGCTAATGAGCTCTAAAAAGAAACGTCAATAGAGAAGTTGGAGATTGT
GGGAGGGAGAAGGATCAGCAAGGGGTAGATAAGAGCAAGGACATGTAAGG
GGTTGATAAGAGCAAAAGCAAATAGGGATGACTGGATCACGCTCTCACTG
CGACAATTATGCAGCAAAAAGACAACTGTGTCATTGAGTAA
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protein sequence of jgi.p|Nanoce1779_2|598224

>mRNA_7316-protein ID=mRNA_7316-protein|Name=jgi.p|Nanoce1779_2|598224|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MVQLSLSVVSRSRRRWSILLLVLVLLLLVGNSTAKPNQAKKTKANAATTD
KEERSQAQGGRQNAQLQGKKPQQHKAQMKLQQQKQQKAKRETRASDATME
DTKENRQYHAARVMQGTPLIETLEGLVQEAARVKGPDAADKIRQAIRKSD
TRALSQVMQNAYASTFTVDELAFIADYSNSEIGKRVQRKMSQYVAKVNPA
MEAFTKEVFSGQAVQGESQQRGDRGSQWQHQQATHISEKGTTIIMNGEKA
KQKKEREAAEAAAAAKGMGKGARSPANEL*
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mRNA from alignment at scaffold_19:194823..196257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7316 ID=mRNA_7316|Name=jgi.p|Nanoce1779_2|598224|organism=Nannochloropsis oceanica|type=mRNA|length=1435bp|location=Sequence derived from alignment at scaffold_19:194823..196257- (Nannochloropsis oceanica)
ACAGCCTCGTAACCCTGTGCCCCGTGCGATGGTCCAATTATCCTTATCCG
TCGTCAGCCGCAGCCGTCGACGGTGGTCTATCCTTCTCCTGGTGCTCGTG
TTACTCTTGCTAGTCGGAAACTCGACTGCAAAGCCCAACCAGGCCAAGAA
AACGAAAGCGAATGCCGCGACCACTGACAAAGAAGAGCGGTCGCAGGCGC
AGGGGGGGAGACAGAATGCTCAGCTACAAGGGAAGAAGCCGCAGCAGCAC
AAGGCGCAGATGAAGCTGCAGCAACAGAAGCAGCAAAAGGCCAAGCGAGA
GACCCGGGCCAGCGACGCCACGATGGAGGACACGAAGGAGAACAGACAAT
ACCATGCCGCCCGCGTTATGCAGGGTACGCCTTTGATCGAGACGCTTGAA
GGTCTCGTCCAAGAAGCGGCGCGAGTCAAAGGCCCAGATGCCGCCGATGT
AAGTGTGGTGTAATGAGAGTGATATGGCTTTTGAGCGGTCCGTTTGTTGA
CAACGCGCCATCAGCTCTATGGTCCTCTCCATTCTCTTCCCATGACCACT
GTGCTATCACATCTAAATCAATCAAATTCCATCTTCTCCGCGTTGACACA
TAACACTTAAGAAAATTAGGCAGGCCATCCGCAAATCAGACACGCGGGCA
TTGAGCCAGGTGATGCAAAACGCTTACGCCAGCACCTTCACGGTAGATGA
GCTTGCTTTCATAGCAGATTATAGCAATTCTGAGATCGGAAAACGCGTGC
AGCGGAAGATGAGTCAATACGTCGCCAAGGTTTGAGGGAAAAGGAGGAAG
ATGGGGAGGGAGGGAAGGGGGGGAGAGACGGGATGAAGTGACAAGGAAAT
GCGTCTTCCAGGGTGAACTGTCGGCAGACGCGTAAATTTCATGTATCATG
GGAGGACGTGCAAGCCAGATGCAGAATGCATCCCTTTACGCCCACTCACA
CAGTCAGACTCTCGCTGACACCCCAAACGCTCCATCCTTCCGCCTCAATC
CAACCTCCAGGTCAATCCCGCGATGGAGGCCTTCACGAAGGAGGTATTCT
CCGGCCAGGCCGTACAAGGAGAGAGCCAGCAGAGAGGGGACCGAGGGTCT
CAGTGGCAGCACCAGCAAGCGACTCACATCTCCGAGAAAGGCACCACCAT
CATCATGAACGGCGAGAAAGCCAAGCAAAAGAAGGAAAGGGAAGCAGCAG
AAGCCGCGGCCGCTGCGAAAGGGATGGGGAAAGGCGCTCGAAGTCCCGCT
AATGAGCTCTAAAAAGAAACGTCAATAGAGAAGTTGGAGATTGTGGGAGG
GAGAAGGATCAGCAAGGGGTAGATAAGAGCAAGGACATGTAAGGGGTTGA
TAAGAGCAAAAGCAAATAGGGATGACTGGATCACGCTCTCACTGCGACAA
TTATGCAGCAAAAAGACAACTGTGTCATTGAGTAA
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Coding sequence (CDS) from alignment at scaffold_19:194823..196257-

>mRNA_7316 ID=mRNA_7316|Name=jgi.p|Nanoce1779_2|598224|organism=Nannochloropsis oceanica|type=CDS|length=2520bp|location=Sequence derived from alignment at scaffold_19:194823..196257- (Nannochloropsis oceanica)
GTCAATCCCGCGATGGAGGCCTTCACGAAGGAGGTATTCTCCGGCCAGGC
CGTACAAGGAGAGAGCCAGCAGAGAGGGGACCGAGGGTCTCAGTGGCAGC
ACCAGCAAGCGACTCACATCTCCGAGAAAGGCACCACCATCATCATGAAC
GGCGAGAAAGCCAAGCAAAAGAAGGAAAGGGAAGCAGCAGAAGCCGCGGC
CGCTGCGAAAGGGATGGGGAAAGGCGCTCGAAGTCCCGCTAATGAGCTCT
AAAAAATTAGGCAGGCCATCCGCAAATCAGACACGCGGGCATTGAGCCAG
GTGATGCAAAACGCTTACGCCAGCACCTTCACGGTAGATGAGCTTGCTTT
CATAGCAGATTATAGCAATTCTGAGATCGGAAAACGCGTGCAGCGGAAGA
TGAGTCAATACGTCGCCAAGATGGTCCAATTATCCTTATCCGTCGTCAGC
CGCAGCCGTCGACGGTGGTCTATCCTTCTCCTGGTGCTCGTGTTACTCTT
GCTAGTCGGAAACTCGACTGCAAAGCCCAACCAGGCCAAGAAAACGAAAG
CGAATGCCGCGACCACTGACAAAGAAGAGCGGTCGCAGGCGCAGGGGGGG
AGACAGAATGCTCAGCTACAAGGGAAGAAGCCGCAGCAGCACAAGGCGCA
GATGAAGCTGCAGCAACAGAAGCAGCAAAAGGCCAAGCGAGAGACCCGGG
CCAGCGACGCCACGATGGAGGACACGAAGGAGAACAGACAATACCATGCC
GCCCGCGTTATGCAGGGTACGCCTTTGATCGAGACGCTTGAAGGTCTCGT
CCAAGAAGCGGCGCGAGTCAAAGGCCCAGATGCCGCCGATGTCAATCCCG
CGATGGAGGCCTTCACGAAGGAGGTATTCTCCGGCCAGGCCGTACAAGGA
GAGAGCCAGCAGAGAGGGGACCGAGGGTCTCAGTGGCAGCACCAGCAAGC
GACTCACATCTCCGAGAAAGGCACCACCATCATCATGAACGGCGAGAAAG
CCAAGCAAAAGAAGGAAAGGGAAGCAGCAGAAGCCGCGGCCGCTGCGAAA
GGGATGGGGAAAGGCGCTCGAAGTCCCGCTAATGAGCTCTAAAAAATTAG
GCAGGCCATCCGCAAATCAGACACGCGGGCATTGAGCCAGGTGATGCAAA
ACGCTTACGCCAGCACCTTCACGGTAGATGAGCTTGCTTTCATAGCAGAT
TATAGCAATTCTGAGATCGGAAAACGCGTGCAGCGGAAGATGAGTCAATA
CGTCGCCAAGATGGTCCAATTATCCTTATCCGTCGTCAGCCGCAGCCGTC
GACGGTGGTCTATCCTTCTCCTGGTGCTCGTGTTACTCTTGCTAGTCGGA
AACTCGACTGCAAAGCCCAACCAGGCCAAGAAAACGAAAGCGAATGCCGC
GACCACTGACAAAGAAGAGCGGTCGCAGGCGCAGGGGGGGAGACAGAATG
CTCAGCTACAAGGGAAGAAGCCGCAGCAGCACAAGGCGCAGATGAAGCTG
CAGCAACAGAAGCAGCAAAAGGCCAAGCGAGAGACCCGGGCCAGCGACGC
CACGATGGAGGACACGAAGGAGAACAGACAATACCATGCCGCCCGCGTTA
TGCAGGGTACGCCTTTGATCGAGACGCTTGAAGGTCTCGTCCAAGAAGCG
GCGCGAGTCAAAGGCCCAGATGCCGCCGATGTCAATCCCGCGATGGAGGC
CTTCACGAAGGAGGTATTCTCCGGCCAGGCCGTACAAGGAGAGAGCCAGC
AGAGAGGGGACCGAGGGTCTCAGTGGCAGCACCAGCAAGCGACTCACATC
TCCGAGAAAGGCACCACCATCATCATGAACGGCGAGAAAGCCAAGCAAAA
GAAGGAAAGGGAAGCAGCAGAAGCCGCGGCCGCTGCGAAAGGGATGGGGA
AAGGCGCTCGAAGTCCCGCTAATGAGCTCTAAAAAATTAGGCAGGCCATC
CGCAAATCAGACACGCGGGCATTGAGCCAGGTGATGCAAAACGCTTACGC
CAGCACCTTCACGGTAGATGAGCTTGCTTTCATAGCAGATTATAGCAATT
CTGAGATCGGAAAACGCGTGCAGCGGAAGATGAGTCAATACGTCGCCAAG
ATGGTCCAATTATCCTTATCCGTCGTCAGCCGCAGCCGTCGACGGTGGTC
TATCCTTCTCCTGGTGCTCGTGTTACTCTTGCTAGTCGGAAACTCGACTG
CAAAGCCCAACCAGGCCAAGAAAACGAAAGCGAATGCCGCGACCACTGAC
AAAGAAGAGCGGTCGCAGGCGCAGGGGGGGAGACAGAATGCTCAGCTACA
AGGGAAGAAGCCGCAGCAGCACAAGGCGCAGATGAAGCTGCAGCAACAGA
AGCAGCAAAAGGCCAAGCGAGAGACCCGGGCCAGCGACGCCACGATGGAG
GACACGAAGGAGAACAGACAATACCATGCCGCCCGCGTTATGCAGGGTAC
GCCTTTGATCGAGACGCTTGAAGGTCTCGTCCAAGAAGCGGCGCGAGTCA
AAGGCCCAGATGCCGCCGAT
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Synonyms
Publications