jgi.p|Nanoce1779_2|598220, mRNA_7315 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598220
Unique NamemRNA_7315
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length537
Alignment locationscaffold_19:194074..194833 +

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Properties
Property NameValue
TranscriptId598306
TrackFilteredModels2
ProteinId598220
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:194074..194833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598220gene_7315Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598220mRNA_7315-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7315CDS_7315Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7315 ID=mRNA_7315|Name=jgi.p|Nanoce1779_2|598220|organism=Nannochloropsis oceanica|type=mRNA|length=537bp
AGACCACAACAATACAATCAGGAGTATCTGTCCGAAATTGAAGGCATGGA
CGACCTGGCCTACAACGAGACCAAGGAAATCAATGGCATTCCCACGGACG
TGACCATAATAAACTATAGCGATCGCGTCTTCCTCGTTATCTCCCAAAAC
TCCAGGTTTGGCACCTTGATATCAGCCAAGGCCGACGACAGCTTAACCCA
GCCCGGTGCCGCCCCTTCCTTCGACGTGAACGTACTCCTCGGCCGACGGG
ACGACCCGCTGCTCCTGATCTACGCACGCCAGCTGGTAGAAGCTATCAGC
AAATCATCCTCTCGACCACTATTGCTATCAATTTCTCTTCGAGAGCGGGA
CCCGGGCACTTTCGAAAAGGTGATGGAATGGGTGAGACCATTGCTGTAGT
ATGGCTCAACAGCTGGTAGCAGAAGGGAGGGATAGGTCAGGGCCTCATGT
CAACCCAAAGAAAGAGGTACACGTAAATGACACAGACAAACTGAAAAGTA
AAGTAGACTTCTATCAAATGCGGAAATTACTCAATGA
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protein sequence of jgi.p|Nanoce1779_2|598220

>mRNA_7315-protein ID=mRNA_7315-protein|Name=jgi.p|Nanoce1779_2|598220|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MDDLAYNETKEINGIPTDVTIINYSDRVFLVISQNSRFGTLISAKADDSL
TQPGAAPSFDVNVLLGRRDDPLLLIYARQLVEAISKSSSRPLLLSISLRE
RDPGTFEKVMEWVRPLL*
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mRNA from alignment at scaffold_19:194074..194833+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7315 ID=mRNA_7315|Name=jgi.p|Nanoce1779_2|598220|organism=Nannochloropsis oceanica|type=mRNA|length=760bp|location=Sequence derived from alignment at scaffold_19:194074..194833+ (Nannochloropsis oceanica)
AGACCACAACAATACAATCAGGAGTATCTGTCCGAAATTGAAGGCATGGA
CGACCTGGCCTACAACGAGACCAAGGTGAGTCTTCACTTTTCATTCGACC
TCCCCACCCCCTTGCGTTTAATCTAGAGCTTAACCCTCTACCCACTCCAA
TACCAAACCATCTCTAGGAAATCAATGGCATTCCCACGGACGTGACCATA
ATAAACTATAGCGATCGCGTCTTCCTCGTTATCTCCCAAAACTCCAGGTT
TGGCACCTTGGTACGTGGGAGAGAAGGACAGTGAGAGAAGCAGGATAGGG
GCAGCATTTTGTCCGGGGCATCTCGAGAGCGGGTCTCCCCCTCCCGGTCT
CATCCTATCCCGGACATATGCTCTATCCACATAACCGACAGATATCAGCC
AAGGCCGACGACAGCTTAACCCAGCCCGGTGCCGCCCCTTCCTTCGACGT
GAACGTACTCCTCGGCCGACGGGACGACCCGCTGCTCCTGATCTACGCAC
GCCAGCTGGTAGAAGCTATCAGCAAATCATCCTCTCGACCACTATTGCTA
TCAATTTCTCTTCGAGAGCGGGACCCGGGCACTTTCGAAAAGGTGATGGA
ATGGGTGAGACCATTGCTGTAGTATGGCTCAACAGCTGGTAGCAGAAGGG
AGGGATAGGTCAGGGCCTCATGTCAACCCAAAGAAAGAGGTACACGTAAA
TGACACAGACAAACTGAAAAGTAAAGTAGACTTCTATCAAATGCGGAAAT
TACTCAATGA
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Coding sequence (CDS) from alignment at scaffold_19:194074..194833+

>mRNA_7315 ID=mRNA_7315|Name=jgi.p|Nanoce1779_2|598220|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_19:194074..194833+ (Nannochloropsis oceanica)
ATGGACGACCTGGCCTACAACGAGACCAAGGAAATCAATGGCATTCCCAC
GGACGTGACCATAATAAACTATAGCGATCGCGTCTTCCTCGTTATCTCCC
AAAACTCCAGGTTTGGCACCTTGATATCAGCCAAGGCCGACGACAGCTTA
ACCCAGCCCGGTGCCGCCCCTTCCTTCGACGTGAACGTACTCCTCGGCCG
ACGGGACGACCCGCTGCTCCTGATCTACGCACGCCAGCTGGTAGAAGCTA
TCAGCAAATCATCCTCTCGACCACTATTGCTATCAATTTCTCTTCGAGAG
CGGGACCCGGGCACTTTCGAAAAGGTGATGGAATGGGTGAGACCATTGCT
GTAGATGGACGACCTGGCCTACAACGAGACCAAGGAAATCAATGGCATTC
CCACGGACGTGACCATAATAAACTATAGCGATCGCGTCTTCCTCGTTATC
TCCCAAAACTCCAGGTTTGGCACCTTGATATCAGCCAAGGCCGACGACAG
CTTAACCCAGCCCGGTGCCGCCCCTTCCTTCGACGTGAACGTACTCCTCG
GCCGACGGGACGACCCGCTGCTCCTGATCTACGCACGCCAGCTGGTAGAA
GCTATCAGCAAATCATCCTCTCGACCACTATTGCTATCAATTTCTCTTCG
AGAGCGGGACCCGGGCACTTTCGAAAAGGTGATGGAATGGGTGAGACCAT
TGCTGTAGATGGACGACCTGGCCTACAACGAGACCAAGGAAATCAATGGC
ATTCCCACGGACGTGACCATAATAAACTATAGCGATCGCGTCTTCCTCGT
TATCTCCCAAAACTCCAGGTTTGGCACCTTGATATCAGCCAAGGCCGACG
ACAGCTTAACCCAGCCCGGTGCCGCCCCTTCCTTCGACGTGAACGTACTC
CTCGGCCGACGGGACGACCCGCTGCTCCTGATCTACGCACGCCAGCTGGT
AGAAGCTATCAGCAAATCATCCTCTCGACCACTATTGCTATCAATTTCTC
TTCGAGAGCGGGACCCGGGCACTTTCGAAAAGGTGATGGAATGGGTGAGA
CCATTGCTGTAG
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Synonyms
Publications