jgi.p|Nanoce1779_2|598204, mRNA_7311 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598204
Unique NamemRNA_7311
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length366
Alignment locationscaffold_19:184926..185291 +

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Properties
Property NameValue
TranscriptId598290
TrackFilteredModels2
ProteinId598204
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:184926..185291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598204gene_7311Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598204mRNA_7311-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7311CDS_7311Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7311 ID=mRNA_7311|Name=jgi.p|Nanoce1779_2|598204|organism=Nannochloropsis oceanica|type=mRNA|length=366bp
CCCGTGCTTGTCGATGTCGGTAAAGAGGCAGCATGCTTTCCTCCCTCGTC
CTCCATCTCCTCCACCTCTTCCTCCTCCTCCTCGATCCCTACCAAACGCT
CGTCGTCCAAGTGACCGTAACCACGAGCCTGTTCTGCTTGCCGTATAATG
TACCACATCTCACGGAGCGCACCTCCGCGCCTTTGACGGTTGCGCTCTTC
TCGGGACGTAGCACTTGGGGATCGAAGCCGCGCCATCATCTCGCGAACGG
TGGCCATTGCAATTTTTGGTTTTCGCTGCTCTATTCGGCTGCACTGAGGG
ATGGTCACTGGGACCTGGCCTGGGAAGGATATGAAAAGTGACGCAATGAA
GAAAATGAGAAGAAGG
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protein sequence of jgi.p|Nanoce1779_2|598204

>mRNA_7311-protein ID=mRNA_7311-protein|Name=jgi.p|Nanoce1779_2|598204|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MLSSLVLHLLHLFLLLLDPYQTLVVQVTVTTSLFCLPYNVPHLTERTSAP
LTVALFSGRSTWGSKPRHHLANGGHCNFWFSLLYSAALRDGHWDLAWEGY
EK*
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mRNA from alignment at scaffold_19:184926..185291+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7311 ID=mRNA_7311|Name=jgi.p|Nanoce1779_2|598204|organism=Nannochloropsis oceanica|type=mRNA|length=366bp|location=Sequence derived from alignment at scaffold_19:184926..185291+ (Nannochloropsis oceanica)
CCCGTGCTTGTCGATGTCGGTAAAGAGGCAGCATGCTTTCCTCCCTCGTC
CTCCATCTCCTCCACCTCTTCCTCCTCCTCCTCGATCCCTACCAAACGCT
CGTCGTCCAAGTGACCGTAACCACGAGCCTGTTCTGCTTGCCGTATAATG
TACCACATCTCACGGAGCGCACCTCCGCGCCTTTGACGGTTGCGCTCTTC
TCGGGACGTAGCACTTGGGGATCGAAGCCGCGCCATCATCTCGCGAACGG
TGGCCATTGCAATTTTTGGTTTTCGCTGCTCTATTCGGCTGCACTGAGGG
ATGGTCACTGGGACCTGGCCTGGGAAGGATATGAAAAGTGACGCAATGAA
GAAAATGAGAAGAAGG
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Coding sequence (CDS) from alignment at scaffold_19:184926..185291+

>mRNA_7311 ID=mRNA_7311|Name=jgi.p|Nanoce1779_2|598204|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_19:184926..185291+ (Nannochloropsis oceanica)
ATGCTTTCCTCCCTCGTCCTCCATCTCCTCCACCTCTTCCTCCTCCTCCT
CGATCCCTACCAAACGCTCGTCGTCCAAGTGACCGTAACCACGAGCCTGT
TCTGCTTGCCGTATAATGTACCACATCTCACGGAGCGCACCTCCGCGCCT
TTGACGGTTGCGCTCTTCTCGGGACGTAGCACTTGGGGATCGAAGCCGCG
CCATCATCTCGCGAACGGTGGCCATTGCAATTTTTGGTTTTCGCTGCTCT
ATTCGGCTGCACTGAGGGATGGTCACTGGGACCTGGCCTGGGAAGGATAT
GAAAAGTGA
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Synonyms
Publications