jgi.p|Nanoce1779_2|598201, mRNA_7309 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598201
Unique NamemRNA_7309
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length895
Alignment locationscaffold_19:182311..183622 +

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Properties
Property NameValue
TranscriptId598287
TrackFilteredModels2
ProteinId598201
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:182311..183622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598201gene_7309Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598201mRNA_7309-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7309CDS_7309Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7309 ID=mRNA_7309|Name=jgi.p|Nanoce1779_2|598201|organism=Nannochloropsis oceanica|type=mRNA|length=895bp
AGACCCTACTGTAGGTACCTGTCATCATGGACCCCTTTTCGTTCCTGGCT
CGCGTCCTCGCGCTCCACCATCCCATCGTCGACACCCCTCCCTCCGACTC
GCCTACTTCTACTAGAGAGCGCAGCAACGTGCTCCAGCAGCAACGGTCGC
ACAGCCAACACCATCCTTCCCCATCCTCTACCATTGCCACGGCCGCATAT
GCGGCTGTGCTCAAGCTGGCGTCGGAACTATTGTCTCAGGAGCCAGGATT
ATTGGAGGGTGCGGTGGAGGCATTAGACCGAGCTCCAGTGCACCGCATCA
CCACGCGCCAGTACCGACGGGAATTGCACTTGGTGAAAGGGCGGGAACGA
CTCGAATACACGGTGCTGGGCACCCGGGACTGCAGCTGTCAGAGCTTCCA
ACTAATGCAATGTCGTTCTCTTCGACCACGGTGCAAGCACCTGCTGGCCG
TATGCCTGGCCCCCTTTCTTGGGCGCCTGGAGGAACGAGAGGTTAATGAC
GAGCTGTACGAGAGCTACGTCCGTCTCTAGAATGGAAGGTGGCGAAGGAG
GGAGGAAAGGGGGAGATCGGAGGGAGAAGGCAAACACCTTCCTTACTCCC
TGTCATGGCTGGCGATGGAACAGGAGGAGGAGGAGAATATGGAAGAGGAA
GACGTGTCGGGAAAGTGGTGGGAAGGGCAGGAGGTGGTACTGTGGTTTGC
CCGGCGGCGTAGCTGAGCGGTTCGTCCGTCTCTAGAGCAGCTGCGGTAGC
AAGGGCAAGGAGGTCGGTGGTAAAAATGGAGGTGTTGCTGCTGCTGAGGG
AACGAAGAAGGAGGAAGATGATGAGGTGGAGGAGAGTAGGAAAATGGGTA
ATGGTACTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTG
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protein sequence of jgi.p|Nanoce1779_2|598201

>mRNA_7309-protein ID=mRNA_7309-protein|Name=jgi.p|Nanoce1779_2|598201|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MDPFSFLARVLALHHPIVDTPPSDSPTSTRERSNVLQQQRSHSQHHPSPS
STIATAAYAAVLKLASELLSQEPGLLEGAVEALDRAPVHRITTRQYRREL
HLVKGRERLEYTVLGTRDCSCQSFQLMQCRSLRPRCKHLLAVCLAPFLGR
LEEREVNDELYESYVRL*
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mRNA from alignment at scaffold_19:182311..183622+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7309 ID=mRNA_7309|Name=jgi.p|Nanoce1779_2|598201|organism=Nannochloropsis oceanica|type=mRNA|length=1312bp|location=Sequence derived from alignment at scaffold_19:182311..183622+ (Nannochloropsis oceanica)
AGACCCTACTGTAGGTACCTGTCATCATGGACCCCTTTTCGTTCCTGGCT
CGCGTCCTCGCGCTCCACCATCCCATCGTCGACACCCCTCCCTCCGACTC
GCCTACTTCTACTAGAGAGCGCAGCAACGTGCTCCAGCAGCAACGGTCGC
ACAGCCAACACCATCCTTCCCCATCCTCTACCATTGCCACGGCCGCATAT
GCGGCTGTGCTCAAGCTGGCGTCGGAACTATTGTCTCAGGAGCCAGGATT
ATTGGAGGGTGCGGTGGAGGTGTGTAAATTGAGAGGGGGAGTGAACGGGG
GGGTGGGTGGGAAGGCTTGAGATGCCGGACAAGTTCATGGACACACCGCG
CTTCACCATCACACCACCAGGCATTAGACCGAGCTCCAGTGCACCGCATC
ACCACGCGCCAGTACCGACGGGAATTGCACTTGGTGAAAGGGTACGTGTT
TTACAGGGAAGAGAAGAAGGGAGACGACAGTGAGGGGAAATAGAACTGAA
GACATCATCCGCTAACGCGGACCCGTCTTCCTCTCCTCCTCTCACGAATA
CAGGCGGGAACGACTCGAATACACGGTGCTGGGCACCCGGGACTGCAGCT
GTCAGAGCTTCCAACTAATGCAATGTCGTTCTCTTCGACCACGGGTTCGT
GCTAGTGGATTTTCTTCTTTCGTCGATTTACTATTTGTCTCTCTATTGAA
CGCACCTGGATGCTTGGAGCTACCCCCCCAATTTTCCATACATGCACAGA
CCTCCGAGCTCTGCTCGTGTACATTCTCTCTTCCCTCTACTCTGTTGTTA
GTTGCTCACAGTCCCCTCCAACCACCCAACCGGCGTGCCGACACTTAGTG
CAAGCACCTGCTGGCCGTATGCCTGGCCCCCTTTCTTGGGCGCCTGGAGG
AACGAGAGGTTAATGACGAGCTGTACGAGAGCTACGTCCGTCTCTAGAAT
GGAAGGTGGCGAAGGAGGGAGGAAAGGGGGAGATCGGAGGGAGAAGGCAA
ACACCTTCCTTACTCCCTGTCATGGCTGGCGATGGAACAGGAGGAGGAGG
AGAATATGGAAGAGGAAGACGTGTCGGGAAAGTGGTGGGAAGGGCAGGAG
GTGGTACTGTGGTTTGCCCGGCGGCGTAGCTGAGCGGTTCGTCCGTCTCT
AGAGCAGCTGCGGTAGCAAGGGCAAGGAGGTCGGTGGTAAAAATGGAGGT
GTTGCTGCTGCTGAGGGAACGAAGAAGGAGGAAGATGATGAGGTGGAGGA
GAGTAGGAAAATGGGTAATGGTACTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGCTGTTG
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Coding sequence (CDS) from alignment at scaffold_19:182311..183622+

>mRNA_7309 ID=mRNA_7309|Name=jgi.p|Nanoce1779_2|598201|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_19:182311..183622+ (Nannochloropsis oceanica)
ATGGACCCCTTTTCGTTCCTGGCTCGCGTCCTCGCGCTCCACCATCCCAT
CGTCGACACCCCTCCCTCCGACTCGCCTACTTCTACTAGAGAGCGCAGCA
ACGTGCTCCAGCAGCAACGGTCGCACAGCCAACACCATCCTTCCCCATCC
TCTACCATTGCCACGGCCGCATATGCGGCTGTGCTCAAGCTGGCGTCGGA
ACTATTGTCTCAGGAGCCAGGATTATTGGAGGGTGCGGTGGAGGCATTAG
ACCGAGCTCCAGTGCACCGCATCACCACGCGCCAGTACCGACGGGAATTG
CACTTGGTGAAAGGGCGGGAACGACTCGAATACACGGTGCTGGGCACCCG
GGACTGCAGCTGTCAGAGCTTCCAACTAATGCAATGTCGTTCTCTTCGAC
CACGGTGCAAGCACCTGCTGGCCGTATGCCTGGCCCCCTTTCTTGGGCGC
CTGGAGGAACGAGAGGTTAATGACGAGCTGTACGAGAGCTACGTCCGTCT
CTAGATGGACCCCTTTTCGTTCCTGGCTCGCGTCCTCGCGCTCCACCATC
CCATCGTCGACACCCCTCCCTCCGACTCGCCTACTTCTACTAGAGAGCGC
AGCAACGTGCTCCAGCAGCAACGGTCGCACAGCCAACACCATCCTTCCCC
ATCCTCTACCATTGCCACGGCCGCATATGCGGCTGTGCTCAAGCTGGCGT
CGGAACTATTGTCTCAGGAGCCAGGATTATTGGAGGGTGCGGTGGAGGCA
TTAGACCGAGCTCCAGTGCACCGCATCACCACGCGCCAGTACCGACGGGA
ATTGCACTTGGTGAAAGGGCGGGAACGACTCGAATACACGGTGCTGGGCA
CCCGGGACTGCAGCTGTCAGAGCTTCCAACTAATGCAATGTCGTTCTCTT
CGACCACGGTGCAAGCACCTGCTGGCCGTATGCCTGGCCCCCTTTCTTGG
GCGCCTGGAGGAACGAGAGGTTAATGACGAGCTGTACGAGAGCTACGTCC
GTCTCTAGATGGACCCCTTTTCGTTCCTGGCTCGCGTCCTCGCGCTCCAC
CATCCCATCGTCGACACCCCTCCCTCCGACTCGCCTACTTCTACTAGAGA
GCGCAGCAACGTGCTCCAGCAGCAACGGTCGCACAGCCAACACCATCCTT
CCCCATCCTCTACCATTGCCACGGCCGCATATGCGGCTGTGCTCAAGCTG
GCGTCGGAACTATTGTCTCAGGAGCCAGGATTATTGGAGGGTGCGGTGGA
GGCATTAGACCGAGCTCCAGTGCACCGCATCACCACGCGCCAGTACCGAC
GGGAATTGCACTTGGTGAAAGGGCGGGAACGACTCGAATACACGGTGCTG
GGCACCCGGGACTGCAGCTGTCAGAGCTTCCAACTAATGCAATGTCGTTC
TCTTCGACCACGGTGCAAGCACCTGCTGGCCGTATGCCTGGCCCCCTTTC
TTGGGCGCCTGGAGGAACGAGAGGTTAATGACGAGCTGTACGAGAGCTAC
GTCCGTCTCTAGATGGACCCCTTTTCGTTCCTGGCTCGCGTCCTCGCGCT
CCACCATCCCATCGTCGACACCCCTCCCTCCGACTCGCCTACTTCTACTA
GAGAGCGCAGCAACGTGCTCCAGCAGCAACGGTCGCACAGCCAACACCAT
CCTTCCCCATCCTCTACCATTGCCACGGCCGCATATGCGGCTGTGCTCAA
GCTGGCGTCGGAACTATTGTCTCAGGAGCCAGGATTATTGGAGGGTGCGG
TGGAGGCATTAGACCGAGCTCCAGTGCACCGCATCACCACGCGCCAGTAC
CGACGGGAATTGCACTTGGTGAAAGGGCGGGAACGACTCGAATACACGGT
GCTGGGCACCCGGGACTGCAGCTGTCAGAGCTTCCAACTAATGCAATGTC
GTTCTCTTCGACCACGGTGCAAGCACCTGCTGGCCGTATGCCTGGCCCCC
TTTCTTGGGCGCCTGGAGGAACGAGAGGTTAATGACGAGCTGTACGAGAG
CTACGTCCGTCTCTAG
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Synonyms
Publications