jgi.p|Nanoce1779_2|598191, mRNA_7308 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598191
Unique Name	mRNA_7308
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1362
Alignment location	scaffold_19:179467..180828 +

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Properties


Property Name	Value
TranscriptId	598277
Track	FilteredModels2
ProteinId	598191

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:179467..180828 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598191	gene_7308	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598191	mRNA_7308-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7308	CDS_7308	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:179467..180828+
coding sequence from alignment at scaffold_19:179467..180828+

mRNA sequence

>mRNA_7308 ID=mRNA_7308|Name=jgi.p|Nanoce1779_2|598191|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
GATGTGGAGCATATGAAGAAAGAGGCAAGGGCAGTTTTTTTTCAAACTTT
TTTTCTTTCCATGTCACACATACCATCACACATCACACACCACAGGAGGG
ATGGCAGGTATGACGAGCACCAGGAGAACAAGGAGGTGGAGGCTTGGCAT
CGCTCACAACCACTGATAGAGCCTTCTTGGCTTTTTCGTGCGTACGATGG
AAGCTCCGGCAGCGACATCATCCTCCTCGCCGACCAGACGGAGGCCCAGG
CAGGATTTGAGCAAGACTGAGGCGGCAGCATGCGGGGCCATTGCGGGAGG
TGCCTCGCGGGTGCTGACCGCACCCTTTGACGTCATTAAGATCCGCTTTC
AGCTGCAGATGGGTTCGATCTCCACGGCTGCGGACCGACAGCGTTTAGCC
TACCAAACCGTCGCGGGCTCCCTTCGCAAGGTGGCCCGGGAAGAAGGACT
CATTGGGCTCTGGCGCGGAAACCTCGCAGCGACCTACTTATGGATTGGTT
ACGGTGCGATTCAATTCCCTGTGTACGAAGCTTTAAAAACGGAGCTGAAA
TGCATGCCGGCCGTGGCACCTGTTGCTGCTTTTGTGGCCGGGGGAGGGGC
GGGCCTGGTTGCGACGGTTGCGACGTACCCTTTTGACGTGATTCGGACGC
AATTTGCCGCACAGGGCTTGCCGCGGGCGCATGAGACAATGGCATCTTTC
GTCATGGCCACGTTGCGAGCACAGGGGTGGAAGGGGCTTTTCGCGGGACT
GGCCCCCACGGCGTTGCAGATTATTCCTCGGATGGGCTTGTCCTTCGCGC
TGTATGAAAAGATGGATGGTGCCGCTGCTGCTGCTGCTGGCGGGACAAGC
AATCAAAGAGAGGACAAAGAGGGAGGTGGAGACGAATGGTGGTGGGAGGA
GTCACGACGATGGTGCCTGAGTGCAGTGTATGGTGGGGTCTCGGGAGGGA
TTGCCCGCGTTGCCATCCACCCGCTCGACACACTCAAGCGACGGATGCAG
GCCCGAGTCCTCATAGGCGTCTCCTCCGATGCCCCTGTTGGAGCGGAAGC
CATGCAGTCCACTATTCCTGTCGAAGGAAGCAATACGAGACCCGCCACCG
CTCGCTCCCCGTCCTCGTGGGACTGCTTGGGACGTATCGTGAGGCGCGAG
GGCGTGACGGCCGTGTTCAAAGGCCTGGCCCCCACTCTGCTCAAGTCCGT
TCTCTCGACCGCCATCATCTTCGCTGTCTACGAAGGGCTTAAGGCACGCC
TCCTCCTCGCTGCTGCTGCTCGAACCGAGGAGGAGAAGAGAAAGTGAGGA
GTACATACAAGGGAAGAGGTGGCAACAAGTAAATAGAACTGAAATAATCT
CAACAGTGCGTA

protein sequence of jgi.p|Nanoce1779_2|598191

>mRNA_7308-protein ID=mRNA_7308-protein|Name=jgi.p|Nanoce1779_2|598191|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MEAPAATSSSSPTRRRPRQDLSKTEAAACGAIAGGASRVLTAPFDVIKIR
FQLQMGSISTAADRQRLAYQTVAGSLRKVAREEGLIGLWRGNLAATYLWI
GYGAIQFPVYEALKTELKCMPAVAPVAAFVAGGGAGLVATVATYPFDVIR
TQFAAQGLPRAHETMASFVMATLRAQGWKGLFAGLAPTALQIIPRMGLSF
ALYEKMDGAAAAAAGGTSNQREDKEGGGDEWWWEESRRWCLSAVYGGVSG
GIARVAIHPLDTLKRRMQARVLIGVSSDAPVGAEAMQSTIPVEGSNTRPA
TARSPSSWDCLGRIVRREGVTAVFKGLAPTLLKSVLSTAIIFAVYEGLKA
RLLLAAAARTEEEKRK*

mRNA from alignment at scaffold_19:179467..180828+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7308 ID=mRNA_7308|Name=jgi.p|Nanoce1779_2|598191|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp|location=Sequence derived from alignment at scaffold_19:179467..180828+ (Nannochloropsis oceanica)
GATGTGGAGCATATGAAGAAAGAGGCAAGGGCAGTTTTTTTTCAAACTTT
TTTTCTTTCCATGTCACACATACCATCACACATCACACACCACAGGAGGG
ATGGCAGGTATGACGAGCACCAGGAGAACAAGGAGGTGGAGGCTTGGCAT
CGCTCACAACCACTGATAGAGCCTTCTTGGCTTTTTCGTGCGTACGATGG
AAGCTCCGGCAGCGACATCATCCTCCTCGCCGACCAGACGGAGGCCCAGG
CAGGATTTGAGCAAGACTGAGGCGGCAGCATGCGGGGCCATTGCGGGAGG
TGCCTCGCGGGTGCTGACCGCACCCTTTGACGTCATTAAGATCCGCTTTC
AGCTGCAGATGGGTTCGATCTCCACGGCTGCGGACCGACAGCGTTTAGCC
TACCAAACCGTCGCGGGCTCCCTTCGCAAGGTGGCCCGGGAAGAAGGACT
CATTGGGCTCTGGCGCGGAAACCTCGCAGCGACCTACTTATGGATTGGTT
ACGGTGCGATTCAATTCCCTGTGTACGAAGCTTTAAAAACGGAGCTGAAA
TGCATGCCGGCCGTGGCACCTGTTGCTGCTTTTGTGGCCGGGGGAGGGGC
GGGCCTGGTTGCGACGGTTGCGACGTACCCTTTTGACGTGATTCGGACGC
AATTTGCCGCACAGGGCTTGCCGCGGGCGCATGAGACAATGGCATCTTTC
GTCATGGCCACGTTGCGAGCACAGGGGTGGAAGGGGCTTTTCGCGGGACT
GGCCCCCACGGCGTTGCAGATTATTCCTCGGATGGGCTTGTCCTTCGCGC
TGTATGAAAAGATGGATGGTGCCGCTGCTGCTGCTGCTGGCGGGACAAGC
AATCAAAGAGAGGACAAAGAGGGAGGTGGAGACGAATGGTGGTGGGAGGA
GTCACGACGATGGTGCCTGAGTGCAGTGTATGGTGGGGTCTCGGGAGGGA
TTGCCCGCGTTGCCATCCACCCGCTCGACACACTCAAGCGACGGATGCAG
GCCCGAGTCCTCATAGGCGTCTCCTCCGATGCCCCTGTTGGAGCGGAAGC
CATGCAGTCCACTATTCCTGTCGAAGGAAGCAATACGAGACCCGCCACCG
CTCGCTCCCCGTCCTCGTGGGACTGCTTGGGACGTATCGTGAGGCGCGAG
GGCGTGACGGCCGTGTTCAAAGGCCTGGCCCCCACTCTGCTCAAGTCCGT
TCTCTCGACCGCCATCATCTTCGCTGTCTACGAAGGGCTTAAGGCACGCC
TCCTCCTCGCTGCTGCTGCTCGAACCGAGGAGGAGAAGAGAAAGTGAGGA
GTACATACAAGGGAAGAGGTGGCAACAAGTAAATAGAACTGAAATAATCT
CAACAGTGCGTA

Coding sequence (CDS) from alignment at scaffold_19:179467..180828+

>mRNA_7308 ID=mRNA_7308|Name=jgi.p|Nanoce1779_2|598191|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at scaffold_19:179467..180828+ (Nannochloropsis oceanica)
ATGGAAGCTCCGGCAGCGACATCATCCTCCTCGCCGACCAGACGGAGGCC
CAGGCAGGATTTGAGCAAGACTGAGGCGGCAGCATGCGGGGCCATTGCGG
GAGGTGCCTCGCGGGTGCTGACCGCACCCTTTGACGTCATTAAGATCCGC
TTTCAGCTGCAGATGGGTTCGATCTCCACGGCTGCGGACCGACAGCGTTT
AGCCTACCAAACCGTCGCGGGCTCCCTTCGCAAGGTGGCCCGGGAAGAAG
GACTCATTGGGCTCTGGCGCGGAAACCTCGCAGCGACCTACTTATGGATT
GGTTACGGTGCGATTCAATTCCCTGTGTACGAAGCTTTAAAAACGGAGCT
GAAATGCATGCCGGCCGTGGCACCTGTTGCTGCTTTTGTGGCCGGGGGAG
GGGCGGGCCTGGTTGCGACGGTTGCGACGTACCCTTTTGACGTGATTCGG
ACGCAATTTGCCGCACAGGGCTTGCCGCGGGCGCATGAGACAATGGCATC
TTTCGTCATGGCCACGTTGCGAGCACAGGGGTGGAAGGGGCTTTTCGCGG
GACTGGCCCCCACGGCGTTGCAGATTATTCCTCGGATGGGCTTGTCCTTC
GCGCTGTATGAAAAGATGGATGGTGCCGCTGCTGCTGCTGCTGGCGGGAC
AAGCAATCAAAGAGAGGACAAAGAGGGAGGTGGAGACGAATGGTGGTGGG
AGGAGTCACGACGATGGTGCCTGAGTGCAGTGTATGGTGGGGTCTCGGGA
GGGATTGCCCGCGTTGCCATCCACCCGCTCGACACACTCAAGCGACGGAT
GCAGGCCCGAGTCCTCATAGGCGTCTCCTCCGATGCCCCTGTTGGAGCGG
AAGCCATGCAGTCCACTATTCCTGTCGAAGGAAGCAATACGAGACCCGCC
ACCGCTCGCTCCCCGTCCTCGTGGGACTGCTTGGGACGTATCGTGAGGCG
CGAGGGCGTGACGGCCGTGTTCAAAGGCCTGGCCCCCACTCTGCTCAAGT
CCGTTCTCTCGACCGCCATCATCTTCGCTGTCTACGAAGGGCTTAAGGCA
CGCCTCCTCCTCGCTGCTGCTGCTCGAACCGAGGAGGAGAAGAGAAAGTG
A

Synonyms

Publications