jgi.p|Nanoce1779_2|598186, mRNA_7307 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598186
Unique Name	mRNA_7307
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1573
Alignment location	scaffold_19:177494..179405 -

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Properties


Property Name	Value
TranscriptId	598272
Track	FilteredModels2
ProteinId	598186

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:177494..179405 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598186	gene_7307	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598186	mRNA_7307-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7307	CDS_7307	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:177494..179405-
coding sequence from alignment at scaffold_19:177494..179405-

mRNA sequence

>mRNA_7307 ID=mRNA_7307|Name=jgi.p|Nanoce1779_2|598186|organism=Nannochloropsis oceanica|type=mRNA|length=1573bp
AACCACAGAGAGCTGTAAACCCCTCTAATTCTTTGCCTCTCGAAGCATCC
CTCGCTTCATCATCAGTCTTGGTTCGCGCGTGCGTAGCTGTATGCGCCTC
TTCTCACTCTTCCTTCAGTTCGTCCTCCTAGTTGTGACCGCCTTCACGTC
CTCCGCTCCCACAGCCAGGGCCTTTCGGATCGATAACATGATCTCCAAGC
TAATTGGCAAGAATTTGCCGGACTACACTTATTCGGTGCCAGGTAAGTGT
CTTCTTCTACGTGTACCAACGACATGCACCGAATCACAAGTATCCAAGCT
CACACCCGTAATGATTATGGGGCCTGAAAATCTGCTCCTAGTTCTGCCGG
GTCGGTCATTTTCCATTCGCAGCTGCTTGATGCTCACATCCCTTCTCCCC
CACTCTCTCCAACAGGCATGCTTTTCTACTTCCTCGACCCCTCGCACACG
GCCCTGGGATTCAAGGCACACGCCGCCTGTTTTAACAAGAAGGATCTCGA
AGTTGATTTAAAGGGACGGTCCATCTTAGTGGCGGGCGGGAATGCGGGTA
TAGGCCGTAGTGCTGCACAAAGCTTAGCGGAACGAGGGGCCACGGTGCAC
ATCGTGTGTCGTTCTCGAGAGAAGGGGGAACAAGCCGTGGCGGACATCAA
GACAGCGACGGGTAATGACGATGTATACCTACATGTGGTGGACCTGGGGT
CGATGGGGCAGGTGCAGGCTTTCACTAAAACGTTTGCCGCGAGTGGAAAG
CCTCTTCACGTCCTGGTAAACAATGCTGCCACGATGCAAAGCACCCGCAC
CGTCACCCCAGAGGGCATCGAGACGGCGCAAGCCACAAACCTGCTGGGGT
TTTACGGGCTTACCCGGGGCCTGCTCCCTGTGTTGAAACAGAACGCGCCC
GCGCGAATCGTCAACGTTGTATCTGCCGGAATGCTTGCTTCTCAATTCAA
GTTAAAAGGTCTGACCGAAGAGGAAAAAATTGAGCCATACGACGGGGCGG
CTGTCTATTCCCTGCATCATCGAGCACGGGTCATGCTGACTGAGACATGG
GCGGAGGAGTCCAAGGGAAGCAATTTGGTGGTTAACTGTGTTCATCCCGG
GTGGGTGGATACGCCGCTGTTGCGGACGGCAGGGCCCATGGAAGGGTTCT
ACAAGCTAATGCGAGGTGCCCTTCGCACGGAACTCCAAGGGGCAGACACA
ATCGTCTGGCTGGCCGCGTCCCAGAAGGGGGGGGAGAGCACAGGCAAGTA
TTTTTTTGACCGCAAAGCGAGGTGGAAAAATCTATTGTTCGCCAACACCA
AGCCGGAAAAGAAAGACTATGAGGATCTGGTTGCGTTTTGTGAGGGGAAG
TGTCCGGTGTGGGAGGGAGGGAAGTGAGAGTGGAAGTATAAGGAGTGAGG
GTAGACGGGTGTAAGAGAGAAGGGGGGAAAGAAACTGTCGTTTACTCACA
CTTCGATCTGTAGCCGAATCTTCTCTGTCGTCCGATGGGTATTTGTGCAT
AGATTTTTTAATTAATGAGAAAGACCTAAGAAAAGAAAAGGTGAAGACAA
ATATTCCCGCAAGGATATGTTTT

protein sequence of jgi.p|Nanoce1779_2|598186

>mRNA_7307-protein ID=mRNA_7307-protein|Name=jgi.p|Nanoce1779_2|598186|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MLFYFLDPSHTALGFKAHAACFNKKDLEVDLKGRSILVAGGNAGIGRSAA
QSLAERGATVHIVCRSREKGEQAVADIKTATGNDDVYLHVVDLGSMGQVQ
AFTKTFAASGKPLHVLVNNAATMQSTRTVTPEGIETAQATNLLGFYGLTR
GLLPVLKQNAPARIVNVVSAGMLASQFKLKGLTEEEKIEPYDGAAVYSLH
HRARVMLTETWAEESKGSNLVVNCVHPGWVDTPLLRTAGPMEGFYKLMRG
ALRTELQGADTIVWLAASQKGGESTGKYFFDRKARWKNLLFANTKPEKKD
YEDLVAFCEGKCPVWEGGK*

mRNA from alignment at scaffold_19:177494..179405-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7307 ID=mRNA_7307|Name=jgi.p|Nanoce1779_2|598186|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp|location=Sequence derived from alignment at scaffold_19:177494..179405- (Nannochloropsis oceanica)
AACCACAGAGAGCTGTAAACCCCTCTAATTCTTTGCCTCTCGAAGCATCC
CTCGCTTCATCATCAGTCTTGGTTCGCGCGTGCGTAGCTGTATGCGCCTC
TTCTCACTCTTCCTTCAGTTCGTCCTCCTAGTTGTGACCGCCTTCACGTC
CTCCGCTCCCACAGCCAGGGCCTTTCGGATCGATAACATGATCTCCAAGC
TAATTGGCAAGAATTTGCCGGACTACACTTATTCGGTGCCAGGTAAGTGT
CTTCTTCTACGTGTACCAACGACATGCACCGAATCACAAGTATCCAAGCT
CACACCCGTAATGATTATGGGGCCTGAAAATCTGCTCCTAGTTCTGCCGG
GTCGGTCATTTTCCATTCGCAGCTGCTTGATGCTCACATCCCTTCTCCCC
CACTCTCTCCAACAGGCATGCTTTTCTACTTCCTCGACCCCTCGCACACG
GCCCTGGGATTCAAGGCACACGCCGCCTGTTTTAACAAGAAGGATCTCGA
AGTTGATTTAAAGGGACGGTCCATCTTAGTGGCGGGCGGGAATGCGGGTA
TAGGCCGTAGTGCTGCACAAAGCTTAGCGGAACGAGGGGCCACGGTGCAC
ATCGTGTGTCGTTCTCGAGAGAAGGGGGAACAAGCCGTGGCGGACATCAA
GACAGCGACGGGTAATGACGATGTATACCTACATGTGGTGGACCTGGGGT
CGATGGGGCAGGTGCAGGCTTTCACTAAAACGTTTGCCGCGAGTGGAAAG
CCTCTTCACGTCCTGGTAAACAATGCTGCCACGATGCAAAGCACCCGCAC
CGTCACCCCAGAGGGCATCGAGACGGCGCAAGCCACAAACCTGCTGGGGT
TTTACGGGCTTACCCGGGGCCTGCTCCCTGTGTTGAAACAGAACGCGCCC
GCGCGAATCGTCAACGTTGTATCTGCCGGAATGCTTGCTTCTCAATTCAA
GGTACGTAACCGTGTTCAGCCCCACCCTCGTCTCTTTCGCAGGCACGCAT
GCGGCCACATATCTTCACTCCTCCCTTCCTCCTTCCCTCCCTCTCTCCCT
TCTAGTTAAAAGGTCTGACCGAAGAGGAAAAAATTGAGCCATACGACGGG
GCGGCTGTCTATTCCCTGCATCATCGAGCACGGGTCATGCTGACTGAGAC
ATGGGCGGAGGAGTCCAAGGGAAGCAATTTGGTGGTTAACTGTGTTCATC
CCGGGTGGGTGGATACGCCGCTGTTGCGGACGGCAGGGCCCATGGAAGGG
TTCTACAAGTACGTTCTTGGGAAAAGAGAGGGAGAGAGGGAGGAAAGGAC
GAAGATAGGAAAGGTGACGGACATAACCATATTAGTAGATGTACCATAGA
AGAAAGTGAAAGAGAACGGGAAGAAGAAAGTGAAGGGGGCTTCATGCGGT
GACGACGTATCGTCCCATAGAGGATGGTCCAAAAACTCACCACTCGGAAT
CCCTCTTTCTCTCCCCCCCTTCATTTCCCCTTTTCTCATCCAGGCTAATG
CGAGGTGCCCTTCGCACGGAACTCCAAGGGGCAGACACAATCGTCTGGCT
GGCCGCGTCCCAGAAGGGGGGGGAGAGCACAGGCAAGTATTTTTTTGACC
GCAAAGCGAGGTGGAAAAATCTATTGTTCGCCAACACCAAGCCGGAAAAG
AAAGACTATGAGGATCTGGTTGCGTTTTGTGAGGGGAAGTGTCCGGTGTG
GGAGGGAGGGAAGTGAGAGTGGAAGTATAAGGAGTGAGGGTAGACGGGTG
TAAGAGAGAAGGGGGGAAAGAAACTGTCGTTTACTCACACTTCGATCTGT
AGCCGAATCTTCTCTGTCGTCCGATGGGTATTTGTGCATAGATTTTTTAA
TTAATGAGAAAGACCTAAGAAAAGAAAAGGTGAAGACAAATATTCCCGCA
AGGATATGTTTT

Coding sequence (CDS) from alignment at scaffold_19:177494..179405-

>mRNA_7307 ID=mRNA_7307|Name=jgi.p|Nanoce1779_2|598186|organism=Nannochloropsis oceanica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_19:177494..179405- (Nannochloropsis oceanica)
GCTAATGCGAGGTGCCCTTCGCACGGAACTCCAAGGGGCAGACACAATCG
TCTGGCTGGCCGCGTCCCAGAAGGGGGGGGAGAGCACAGGCAAGTATTTT
TTTGACCGCAAAGCGAGGTGGAAAAATCTATTGTTCGCCAACACCAAGCC
GGAAAAGAAAGACTATGAGGATCTGGTTGCGTTTTGTGAGGGGAAGTGTC
CGGTGTGGGAGGGAGGGAAGTGATTAAAAGGTCTGACCGAAGAGGAAAAA
ATTGAGCCATACGACGGGGCGGCTGTCTATTCCCTGCATCATCGAGCACG
GGTCATGCTGACTGAGACATGGGCGGAGGAGTCCAAGGGAAGCAATTTGG
TGGTTAACTGTGTTCATCCCGGGTGGGTGGATACGCCGCTGTTGCGGACG
GCAGGGCCCATGGAAGGGTTCTACAAATGCTTTTCTACTTCCTCGACCCC
TCGCACACGGCCCTGGGATTCAAGGCACACGCCGCCTGTTTTAACAAGAA
GGATCTCGAAGTTGATTTAAAGGGACGGTCCATCTTAGTGGCGGGCGGGA
ATGCGGGTATAGGCCGTAGTGCTGCACAAAGCTTAGCGGAACGAGGGGCC
ACGGTGCACATCGTGTGTCGTTCTCGAGAGAAGGGGGAACAAGCCGTGGC
GGACATCAAGACAGCGACGGGTAATGACGATGTATACCTACATGTGGTGG
ACCTGGGGTCGATGGGGCAGGTGCAGGCTTTCACTAAAACGTTTGCCGCG
AGTGGAAAGCCTCTTCACGTCCTGGTAAACAATGCTGCCACGATGCAAAG
CACCCGCACCGTCACCCCAGAGGGCATCGAGACGGCGCAAGCCACAAACC
TGCTGGGGTTTTACGGGCTTACCCGGGGCCTGCTCCCTGTGTTGAAACAG
AACGCGCCCGCGCGAATCGTCAACGTTGTATCTGCCGGAATGCTTGCTTC
TCAATTCAAGGCTAATGCGAGGTGCCCTTCGCACGGAACTCCAAGGGGCA
GACACAATCGTCTGGCTGGCCGCGTCCCAGAAGGGGGGGGAGAGCACAGG
CAAGTATTTTTTTGACCGCAAAGCGAGGTGGAAAAATCTATTGTTCGCCA
ACACCAAGCCGGAAAAGAAAGACTATGAGGATCTGGTTGCGTTTTGTGAG
GGGAAGTGTCCGGTGTGGGAGGGAGGGAAGTGATTAAAAGGTCTGACCGA
AGAGGAAAAAATTGAGCCATACGACGGGGCGGCTGTCTATTCCCTGCATC
ATCGAGCACGGGTCATGCTGACTGAGACATGGGCGGAGGAGTCCAAGGGA
AGCAATTTGGTGGTTAACTGTGTTCATCCCGGGTGGGTGGATACGCCGCT
GTTGCGGACGGCAGGGCCCATGGAAGGGTTCTACAAATGCTTTTCTACTT
CCTCGACCCCTCGCACACGGCCCTGGGATTCAAGGCACACGCCGCCTGTT
TTAACAAGAAGGATCTCGAAGTTGATTTAAAGGGACGGTCCATCTTAGTG
GCGGGCGGGAATGCGGGTATAGGCCGTAGTGCTGCACAAAGCTTAGCGGA
ACGAGGGGCCACGGTGCACATCGTGTGTCGTTCTCGAGAGAAGGGGGAAC
AAGCCGTGGCGGACATCAAGACAGCGACGGGTAATGACGATGTATACCTA
CATGTGGTGGACCTGGGGTCGATGGGGCAGGTGCAGGCTTTCACTAAAAC
GTTTGCCGCGAGTGGAAAGCCTCTTCACGTCCTGGTAAACAATGCTGCCA
CGATGCAAAGCACCCGCACCGTCACCCCAGAGGGCATCGAGACGGCGCAA
GCCACAAACCTGCTGGGGTTTTACGGGCTTACCCGGGGCCTGCTCCCTGT
GTTGAAACAGAACGCGCCCGCGCGAATCGTCAACGTTGTATCTGCCGGAA
TGCTTGCTTCTCAATTCAAGGCTAATGCGAGGTGCCCTTCGCACGGAACT
CCAAGGGGCAGACACAATCGTCTGGCTGGCCGCGTCCCAGAAGGGGGGGG
AGAGCACAGGCAAGTATTTTTTTGACCGCAAAGCGAGGTGGAAAAATCTA
TTGTTCGCCAACACCAAGCCGGAAAAGAAAGACTATGAGGATCTGGTTGC
GTTTTGTGAGGGGAAGTGTCCGGTGTGGGAGGGAGGGAAGTGATTAAAAG
GTCTGACCGAAGAGGAAAAAATTGAGCCATACGACGGGGCGGCTGTCTAT
TCCCTGCATCATCGAGCACGGGTCATGCTGACTGAGACATGGGCGGAGGA
GTCCAAGGGAAGCAATTTGGTGGTTAACTGTGTTCATCCCGGGTGGGTGG
ATACGCCGCTGTTGCGGACGGCAGGGCCCATGGAAGGGTTCTACAAATGC
TTTTCTACTTCCTCGACCCCTCGCACACGGCCCTGGGATTCAAGGCACAC
GCCGCCTGTTTTAACAAGAAGGATCTCGAAGTTGATTTAAAGGGACGGTC
CATCTTAGTGGCGGGCGGGAATGCGGGTATAGGCCGTAGTGCTGCACAAA
GCTTAGCGGAACGAGGGGCCACGGTGCACATCGTGTGTCGTTCTCGAGAG
AAGGGGGAACAAGCCGTGGCGGACATCAAGACAGCGACGGGTAATGACGA
TGTATACCTACATGTGGTGGACCTGGGGTCGATGGGGCAGGTGCAGGCTT
TCACTAAAACGTTTGCCGCGAGTGGAAAGCCTCTTCACGTCCTGGTAAAC
AATGCTGCCACGATGCAAAGCACCCGCACCGTCACCCCAGAGGGCATCGA
GACGGCGCAAGCCACAAACCTGCTGGGGTTTTACGGGCTTACCCGGGGCC
TGCTCCCTGTGTTGAAACAGAACGCGCCCGCGCGAATCGTCAACGTTGTA
TCTGCCGGAATGCTTGCTTCTCAATTCAAG

Synonyms

Publications