jgi.p|Nanoce1779_2|598182, mRNA_7306 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598182
Unique Name	mRNA_7306
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1360
Alignment location	scaffold_19:175239..177493 +

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Properties


Property Name	Value
TranscriptId	598268
Track	FilteredModels2
ProteinId	598182

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:175239..177493 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598182	gene_7306	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598182	mRNA_7306-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7306	CDS_7306	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:175239..177493+
coding sequence from alignment at scaffold_19:175239..177493+

mRNA sequence

>mRNA_7306 ID=mRNA_7306|Name=jgi.p|Nanoce1779_2|598182|organism=Nannochloropsis oceanica|type=mRNA|length=1360bp
AGAGGCTCTCAAGCCCGTCCAACCGCTCGGGATCCCTAACCGAGGCGCTA
TGATTCGAGGCGTCATCATCGTCAACAATCATGGGCGGCCACGGCTCGTC
AAGTTGTATCAGAGCGTGGTCGGCGAAGAAGCTCAACAAAGCGTCATCCG
CAAGGTCTTCCAACAAGTAGCGCAAAGGCCCGACTCATTTTGTAACTACC
TCGATGGGAGCATCCCTGAATGGGGGGAAGGAGTGAAGTTGATCTATCGG
CACTATGCGACCCTTTACTTTGTTTTTGCCGTGGACCAGCAGGAGAGTGA
CCTGGGCATTTTGGATCTGATACAAGTCTTCGTAGAGGCCTTGGACAAGT
GCTTCGAAAATGTCTGCGAGCTTGATCTCATCTTTCACAGCGACAAGGTG
CACTACGTTCTAGACGAGATCATCATGGCCGGCATGGTCCTCGAGACCAA
CATCATCCACATCCTCCAAGTCATCAACGATCAAAACCGCCTGCACGCTC
AGAGTCAAAAGACGCTCACGCCTGGGAGCAAGGCACGGACGCCCACGATT
GGCCCGCCGTCTCTGGGGAGGATTATGCCTCTGAGATAGATCTGTAGGTG
ATACGGATGTACATAGACAAAGGGAAACATGAAGGAGGGTACGGATGCCG
GGAGAAGCTTGAAATGAATTAAAATGCTTAATTCAAGATCTAGAGCTACT
ACAAATGCATTTACGTTGCCATGATTTACCTTGGGTTGCCATAATGTTGA
TTTGACGGACATTATTTCGCAGCGACTGGCGCGGTAACTGGAGGTACCTT
CTTGCCCTGACTGCCGAAGGTGTGGGGAGGCCCTCCTCAGTTTCCAATTA
CTCAATTGTTTTTCAAATTGTGCGCACGTCTTGGTGAGACAAACGGCATA
GCTGCCACAAAGCATTTTTTGAGAACCTTTGAAGAACATTTTAATGGTTG
TACGTTTAATCAAAAGTTGAGCGCTGAATGAGTAGTAGCTGGCTATGTTA
TTCCCATCTTGGGTGCATTGTGTGCACAAGATTTGGGTGCTTCCTTTCCT
TCCTTTTTGGCATGAAATCACTCAAAGAGGTGCAAAAAAGTTGAGAGAGG
GAGAGGGTGGAGGTCCGATGTATGTCTAGTACGCAATCCAAGTTTATGCC
GAGAAGCGGGCAATCAATAACCCTTCCACACCCCGACAGAAAGGTGCATA
TGCTATTGTATCAAACGACAAACATGTCATGGAGCTAGACCGGAAGTGAT
GCATGGAGTGAGTCGGCATTTTCGGCATGTGGGTTATCTTTGGTCAAGAG
AAAAGCGCGGAGAAACTTTTCACATAAATATCCACTATTGAAATAAAACA
AATGACCCAA

protein sequence of jgi.p|Nanoce1779_2|598182

>mRNA_7306-protein ID=mRNA_7306-protein|Name=jgi.p|Nanoce1779_2|598182|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MIRGVIIVNNHGRPRLVKLYQSVVGEEAQQSVIRKVFQQVAQRPDSFCNY
LDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDK
CFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHA
QSQKTLTPGSKARTPTIGPPSLGRIMPLR*

mRNA from alignment at scaffold_19:175239..177493+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7306 ID=mRNA_7306|Name=jgi.p|Nanoce1779_2|598182|organism=Nannochloropsis oceanica|type=mRNA|length=2255bp|location=Sequence derived from alignment at scaffold_19:175239..177493+ (Nannochloropsis oceanica)
AGAGGCTCTCAAGCCCGTCCAACCGCTCGGGATCCCTAACCGAGGCGCTA
TGATTCGAGGTGAGGGAGAGGATGAAGACTAGGAGGGCGTCTCGACGGAT
GATCATGATGCTTGGTGTTTCCGCGTGGCGGCAAATGAATGACATTTGTG
CGGGCTCGCAGCCCAACTTCAGAGGGCTTAGATGTAAGGGCAGCTTGGTG
CTCATTGGAAGGATCCAGCCGCCCAGGACCCGGCTTGATGGTGTGGAACC
CCCCCCCTCACCGTTCCCCACCACCTTGTCGAGAGCTTCAGTTAGCGTAC
ACAACCGCCGCCTTTGCACCAACCGTAATCACAATTTTAATACGTAACAG
GCGTCATCATCGTCAACAATCATGGGCGGCCACGGCTCGTCAAGTTGTAT
CAGAGCGTGGTAAGTAATGTTTGTTTCCCACCATGTTTGCCCGCTGCCAG
CCCCCTCCGCGCAGCCTCTTTTCGTCGTCCTGTGTCCCCTGCCCATCTCC
CACGTGTCCCGTGCCCAGTCTGTCTTTGATGCAATTGTTTTTTGTCCGCT
GGACATGTCTCGATATACTTTTCTGGTGATCTCGATTTTCGCCCGTAACC
CCGCTCTCTCTTTCCTTTGTCCTCTTTCTCCCTCGTTTTCATGTCAACAG
GTCGGCGAAGAAGCTCAACAAAGCGTCATCCGCAAGGTCTTCCAACAAGT
AGCGCAAAGGCCCGACTCATTTTGTAACTACCTCGATGGGAGCATCCCTG
AATGGGGGGAAGGAGTGAAGTTGATCTATCGGCACTATGCGACCCTTTAC
TTTGTTTTTGCCGTGGACCAGCAGGAGAGTGACCTGGGCATTTTGGATCT
GATACAAGGTAGGGAAAAAAGCAGGAGTAAGGGGTAGACTGAGAAAAGGG
ACGATGTATTAAAAATTTGTGGATTTTAGACGCGGATTTTGGAAAGGTTG
GCATTCCTCACTATCTAGTCTGAGAAAAAGAGGAGGACAACAACAAGAAT
GGATTCTCATCTTCTGTAACTCTCTTTTCTCTCCTTAACCTCCGCACTCG
CAGTCTTCGTAGAGGCCTTGGACAAGTGCTTCGAAAATGTCTGCGAGCTT
GATCTCATCTTTCACAGCGACAAGGTGCGTGTGAATGAGAAGGTTGAGAA
GGGGACAGAAAGCGAGAAGCATGCCCTTTTCTCGAGGGAAGAATAACCCA
ATAAAGCACGCATACGACACTGGAAACGACCTCTGTATCTCTTTTCACGT
CTTTCCTTTCTTCTCTCGCTCCCTTCCTCCCCTCATCTCAAGGTGCACTA
CGTTCTAGACGAGATCATCATGGCCGGCATGGTCCTCGAGACCAACATCA
TCCACATCCTCCAAGTCATCAACGATCAAAACCGCCTGCACGCTCAGAGT
CAAAAGACGCTCACGCCTGGGAGCAAGGCACGGACGCCCACGATTGGCCC
GCCGTCTCTGGGGAGGATTATGCCTCTGAGATAGATCTGTAGGTGATACG
GATGTACATAGACAAAGGGAAACATGAAGGAGGGTACGGATGCCGGGAGA
AGCTTGAAATGAATTAAAATGCTTAATTCAAGATCTAGAGCTACTACAAA
TGCATTTACGTTGCCATGATTTACCTTGGGTTGCCATAATGTTGATTTGA
CGGACATTATTTCGCAGCGACTGGCGCGGTAACTGGAGGTACCTTCTTGC
CCTGACTGCCGAAGGTGTGGGGAGGCCCTCCTCAGTTTCCAATTACTCAA
TTGTTTTTCAAATTGTGCGCACGTCTTGGTGAGACAAACGGCATAGCTGC
CACAAAGCATTTTTTGAGAACCTTTGAAGAACATTTTAATGGTTGTACGT
TTAATCAAAAGTTGAGCGCTGAATGAGTAGTAGCTGGCTATGTTATTCCC
ATCTTGGGTGCATTGTGTGCACAAGATTTGGGTGCTTCCTTTCCTTCCTT
TTTGGCATGAAATCACTCAAAGAGGTGCAAAAAAGTTGAGAGAGGGAGAG
GGTGGAGGTCCGATGTATGTCTAGTACGCAATCCAAGTTTATGCCGAGAA
GCGGGCAATCAATAACCCTTCCACACCCCGACAGAAAGGTGCATATGCTA
TTGTATCAAACGACAAACATGTCATGGAGCTAGACCGGAAGTGATGCATG
GAGTGAGTCGGCATTTTCGGCATGTGGGTTATCTTTGGTCAAGAGAAAAG
CGCGGAGAAACTTTTCACATAAATATCCACTATTGAAATAAAACAAATGA
CCCAA

Coding sequence (CDS) from alignment at scaffold_19:175239..177493+

>mRNA_7306 ID=mRNA_7306|Name=jgi.p|Nanoce1779_2|598182|organism=Nannochloropsis oceanica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_19:175239..177493+ (Nannochloropsis oceanica)
ATGATTCGAGGCGTCATCATCGTCAACAATCATGGGCGGCCACGGCTCGT
CAAGTTGTATCAGAGCGTGGTCGGCGAAGAAGCTCAACAAAGCGTCATCC
GCAAGGTCTTCCAACAAGTAGCGCAAAGGCCCGACTCATTTTGTAACTAC
CTCGATGGGAGCATCCCTGAATGGGGGGAAGGAGTGAAGTTGATCTATCG
GCACTATGCGACCCTTTACTTTGTTTTTGCCGTGGACCAGCAGGAGAGTG
ACCTGGGCATTTTGGATCTGATACAAGTCTTCGTAGAGGCCTTGGACAAG
TGCTTCGAAAATGTCTGCGAGCTTGATCTCATCTTTCACAGCGACAAGGT
GCACTACGTTCTAGACGAGATCATCATGGCCGGCATGGTCCTCGAGACCA
ACATCATCCACATCCTCCAAGTCATCAACGATCAAAACCGCCTGCACGCT
CAGAGTCAAAAGACGCTCACGCCTGGGAGCAAGGCACGGACGCCCACGAT
TGGCCCGCCGTCTCTGGGGAGGATTATGCCTCTGAGATAGATGATTCGAG
GCGTCATCATCGTCAACAATCATGGGCGGCCACGGCTCGTCAAGTTGTAT
CAGAGCGTGGTCGGCGAAGAAGCTCAACAAAGCGTCATCCGCAAGGTCTT
CCAACAAGTAGCGCAAAGGCCCGACTCATTTTGTAACTACCTCGATGGGA
GCATCCCTGAATGGGGGGAAGGAGTGAAGTTGATCTATCGGCACTATGCG
ACCCTTTACTTTGTTTTTGCCGTGGACCAGCAGGAGAGTGACCTGGGCAT
TTTGGATCTGATACAAGTCTTCGTAGAGGCCTTGGACAAGTGCTTCGAAA
ATGTCTGCGAGCTTGATCTCATCTTTCACAGCGACAAGGTGCACTACGTT
CTAGACGAGATCATCATGGCCGGCATGGTCCTCGAGACCAACATCATCCA
CATCCTCCAAGTCATCAACGATCAAAACCGCCTGCACGCTCAGAGTCAAA
AGACGCTCACGCCTGGGAGCAAGGCACGGACGCCCACGATTGGCCCGCCG
TCTCTGGGGAGGATTATGCCTCTGAGATAGATGATTCGAGGCGTCATCAT
CGTCAACAATCATGGGCGGCCACGGCTCGTCAAGTTGTATCAGAGCGTGG
TCGGCGAAGAAGCTCAACAAAGCGTCATCCGCAAGGTCTTCCAACAAGTA
GCGCAAAGGCCCGACTCATTTTGTAACTACCTCGATGGGAGCATCCCTGA
ATGGGGGGAAGGAGTGAAGTTGATCTATCGGCACTATGCGACCCTTTACT
TTGTTTTTGCCGTGGACCAGCAGGAGAGTGACCTGGGCATTTTGGATCTG
ATACAAGTCTTCGTAGAGGCCTTGGACAAGTGCTTCGAAAATGTCTGCGA
GCTTGATCTCATCTTTCACAGCGACAAGGTGCACTACGTTCTAGACGAGA
TCATCATGGCCGGCATGGTCCTCGAGACCAACATCATCCACATCCTCCAA
GTCATCAACGATCAAAACCGCCTGCACGCTCAGAGTCAAAAGACGCTCAC
GCCTGGGAGCAAGGCACGGACGCCCACGATTGGCCCGCCGTCTCTGGGGA
GGATTATGCCTCTGAGATAGATGATTCGAGGCGTCATCATCGTCAACAAT
CATGGGCGGCCACGGCTCGTCAAGTTGTATCAGAGCGTGGTCGGCGAAGA
AGCTCAACAAAGCGTCATCCGCAAGGTCTTCCAACAAGTAGCGCAAAGGC
CCGACTCATTTTGTAACTACCTCGATGGGAGCATCCCTGAATGGGGGGAA
GGAGTGAAGTTGATCTATCGGCACTATGCGACCCTTTACTTTGTTTTTGC
CGTGGACCAGCAGGAGAGTGACCTGGGCATTTTGGATCTGATACAAGTCT
TCGTAGAGGCCTTGGACAAGTGCTTCGAAAATGTCTGCGAGCTTGATCTC
ATCTTTCACAGCGACAAGGTGCACTACGTTCTAGACGAGATCATCATGGC
CGGCATGGTCCTCGAGACCAACATCATCCACATCCTCCAAGTCATCAACG
ATCAAAACCGCCTGCACGCTCAGAGTCAAAAGACGCTCACGCCTGGGAGC
AAGGCACGGACGCCCACGATTGGCCCGCCGTCTCTGGGGAGGATTATGCC
TCTGAGATAGATGATTCGAGGCGTCATCATCGTCAACAATCATGGGCGGC
CACGGCTCGTCAAGTTGTATCAGAGCGTGGTCGGCGAAGAAGCTCAACAA
AGCGTCATCCGCAAGGTCTTCCAACAAGTAGCGCAAAGGCCCGACTCATT
TTGTAACTACCTCGATGGGAGCATCCCTGAATGGGGGGAAGGAGTGAAGT
TGATCTATCGGCACTATGCGACCCTTTACTTTGTTTTTGCCGTGGACCAG
CAGGAGAGTGACCTGGGCATTTTGGATCTGATACAAGTCTTCGTAGAGGC
CTTGGACAAGTGCTTCGAAAATGTCTGCGAGCTTGATCTCATCTTTCACA
GCGACAAGGTGCACTACGTTCTAGACGAGATCATCATGGCCGGCATGGTC
CTCGAGACCAACATCATCCACATCCTCCAAGTCATCAACGATCAAAACCG
CCTGCACGCTCAGAGTCAAAAGACGCTCACGCCTGGGAGCAAGGCACGGA
CGCCCACGATTGGCCCGCCGTCTCTGGGGAGGATTATGCCTCTGAGATAG

Synonyms

Publications