jgi.p|Nanoce1779_2|598174, mRNA_7305 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598174
Unique Name	mRNA_7305
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1783
Alignment location	scaffold_19:173368..175150 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598260
Track	FilteredModels2
ProteinId	598174

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:173368..175150 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598174	gene_7305	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598174	mRNA_7305-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7305	CDS_7305	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:173368..175150-
coding sequence from alignment at scaffold_19:173368..175150-

mRNA sequence

>mRNA_7305 ID=mRNA_7305|Name=jgi.p|Nanoce1779_2|598174|organism=Nannochloropsis oceanica|type=mRNA|length=1783bp
AAGCAAGTCAAGGGAATCGCTTCAGGCTGACAAAAAGGCACCAACACCAA
TAACAATCTCATTGATCGTGAGACAGAGACTCCAGAACACCACCACAACA
CACACACACACGTGCACAGACCTTCACCCGGAGCCAGTAGCGAAGAATCC
ACACATCTCGTCGTAAATCAGACCATGGTGTGCTTCATTTTGAAGCCACT
TGCATTTGCCAGGACGGTATGCTCGACCTCCTGCCCCTCGATTGCGGCGT
CTGTCTTTTTTGTGGTCCTCGACCGAAGCTACAAATTTGTTATCGATCCC
TGGCGGATGTAAATCATTTCCCTCTCCCTATATCTCTTCGCAACACAGCT
ATGTTACCCTCCACCACCTCTCCCCCCACTACCACCGTGCGCTGGGGCAT
TATCGGCTGCGGGGACGTCGTCGAAGTCAAGTCGGGGCCCGCATTTAACA
AGGTCCCAAACAGTTGCCTTAAGGCTGTCATGCGCCGTAACGGTGACTTA
GCCAAGTCTTTTGCACAACGTCATCATGTCCCTTTGTTTTTTTCGGACCC
TCAGCAGTTGCTTGACTGCGAGCAAGTCGATGCTGTTTATATCGCTACTC
CTCCAGGCAACCACAAAGAGCTTGCATTGCTATGTGCTACGATGGGTAAA
CCTACTTTAGTTGAAAAACCCATGGCAAGGTGTGCGGTGGAATGTAGGGA
GATGATACGAGGATTCAATCGGGTGAGTTTGCCTTTATTTGTTGCGTATT
ATCGACGGCATTTACCTAAGTTTGAGGCTGTGCATACGATTTTGAAAGAG
GGTAAATTGGGAAAGATTACGGAGGTGAGGCTTTTCTGCTCCCGCTTGCG
GCCGATGCCCAAGGAGAGAGGGGAGGGACGTAAGGAGGAGTGGAGGGTGG
ATGCTGCAGTAGCGGGGGGAGGCTTGTTTCTGGACTTGGGGAGTCATATG
CTTGATCTCGTCGATTGGTTGTTTGGGCCGGTGCCGTTGGAGAGTGTGAA
AGGTATGGCAGGATGTACGAGAAGCTGTAGTAGCATCAGCAGGAACAGCA
TCAGTAGCAGCAGAAGTAATGGTCACAGTACTTCTTCATCATCTTCCTTT
TCCTCATCCTCCACTCCGAAAAATCGAACGGCGGCTGACGTGGAAGACCA
AGTCCGCATGGTATTCCGAACAAAAGAAGGGGCTTTGGGGATGGGCTCGT
GGAATTTTGCTTCGTCTATCGAAGAGGACTCTTTCGTTATTGTTGGTGAG
AAAGGCCATGTCAAATTTTCAGTTTTTAACAATGGGCCGATCGTTTTGAC
GACCCGGAAGGAGGGCAAGGATGATGCGGAGAAAGGTATGGTGGTGGAAA
CAATTGGAGGATTCGATGTGAAAGCATCGCCGCATGTGCATTTGCCGCTG
ATTGCCGCCGTGACGGATGATGTGCGGAGGTGGAAGGAGGCAAAGAAAGC
AGCAGCAACAGCGAAGACGAAATGTGACGTTAGCATTATCAAGGACAAAA
ATGGGGATGAGGAGGAGAAGGAGGAGAAGGAGGAGATTGAGTGGCAGTGT
CGGAGCACAGGGGCGTCGGCGTTGCGAACGAGTGAAGTGATGGATAAGGT
GTTGGTTGCTTACTATGGAGGAACAAGGGATGATGCGTTTTGGACTCGGC
CTGAGACGTGGGACATGCCGATTTGATGTGGTTGCTACGCTGCTGTCAGA
TGAAGTATTGAAAAGAAACTGTTTATAAGATGAAGTCTGGGTGCAATCGT
GTGAAGACATAGGAAGAAAAAAGACAGTATGCA

protein sequence of jgi.p|Nanoce1779_2|598174

>mRNA_7305-protein ID=mRNA_7305-protein|Name=jgi.p|Nanoce1779_2|598174|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MLDLLPLDCGVCLFCGPRPKLQICYRSLADVNHFPLPISLRNTAMLPSTT
SPPTTTVRWGIIGCGDVVEVKSGPAFNKVPNSCLKAVMRRNGDLAKSFAQ
RHHVPLFFSDPQQLLDCEQVDAVYIATPPGNHKELALLCATMGKPTLVEK
PMARCAVECREMIRGFNRVSLPLFVAYYRRHLPKFEAVHTILKEGKLGKI
TEVRLFCSRLRPMPKERGEGRKEEWRVDAAVAGGGLFLDLGSHMLDLVDW
LFGPVPLESVKGMAGCTRSCSSISRNSISSSRSNGHSTSSSSSFSSSSTP
KNRTAADVEDQVRMVFRTKEGALGMGSWNFASSIEEDSFVIVGEKGHVKF
SVFNNGPIVLTTRKEGKDDAEKGMVVETIGGFDVKASPHVHLPLIAAVTD
DVRRWKEAKKAAATAKTKCDVSIIKDKNGDEEEKEEKEEIEWQCRSTGAS
ALRTSEVMDKVLVAYYGGTRDDAFWTRPETWDMPI*

mRNA from alignment at scaffold_19:173368..175150-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7305 ID=mRNA_7305|Name=jgi.p|Nanoce1779_2|598174|organism=Nannochloropsis oceanica|type=mRNA|length=1783bp|location=Sequence derived from alignment at scaffold_19:173368..175150- (Nannochloropsis oceanica)
AAGCAAGTCAAGGGAATCGCTTCAGGCTGACAAAAAGGCACCAACACCAA
TAACAATCTCATTGATCGTGAGACAGAGACTCCAGAACACCACCACAACA
CACACACACACGTGCACAGACCTTCACCCGGAGCCAGTAGCGAAGAATCC
ACACATCTCGTCGTAAATCAGACCATGGTGTGCTTCATTTTGAAGCCACT
TGCATTTGCCAGGACGGTATGCTCGACCTCCTGCCCCTCGATTGCGGCGT
CTGTCTTTTTTGTGGTCCTCGACCGAAGCTACAAATTTGTTATCGATCCC
TGGCGGATGTAAATCATTTCCCTCTCCCTATATCTCTTCGCAACACAGCT
ATGTTACCCTCCACCACCTCTCCCCCCACTACCACCGTGCGCTGGGGCAT
TATCGGCTGCGGGGACGTCGTCGAAGTCAAGTCGGGGCCCGCATTTAACA
AGGTCCCAAACAGTTGCCTTAAGGCTGTCATGCGCCGTAACGGTGACTTA
GCCAAGTCTTTTGCACAACGTCATCATGTCCCTTTGTTTTTTTCGGACCC
TCAGCAGTTGCTTGACTGCGAGCAAGTCGATGCTGTTTATATCGCTACTC
CTCCAGGCAACCACAAAGAGCTTGCATTGCTATGTGCTACGATGGGTAAA
CCTACTTTAGTTGAAAAACCCATGGCAAGGTGTGCGGTGGAATGTAGGGA
GATGATACGAGGATTCAATCGGGTGAGTTTGCCTTTATTTGTTGCGTATT
ATCGACGGCATTTACCTAAGTTTGAGGCTGTGCATACGATTTTGAAAGAG
GGTAAATTGGGAAAGATTACGGAGGTGAGGCTTTTCTGCTCCCGCTTGCG
GCCGATGCCCAAGGAGAGAGGGGAGGGACGTAAGGAGGAGTGGAGGGTGG
ATGCTGCAGTAGCGGGGGGAGGCTTGTTTCTGGACTTGGGGAGTCATATG
CTTGATCTCGTCGATTGGTTGTTTGGGCCGGTGCCGTTGGAGAGTGTGAA
AGGTATGGCAGGATGTACGAGAAGCTGTAGTAGCATCAGCAGGAACAGCA
TCAGTAGCAGCAGAAGTAATGGTCACAGTACTTCTTCATCATCTTCCTTT
TCCTCATCCTCCACTCCGAAAAATCGAACGGCGGCTGACGTGGAAGACCA
AGTCCGCATGGTATTCCGAACAAAAGAAGGGGCTTTGGGGATGGGCTCGT
GGAATTTTGCTTCGTCTATCGAAGAGGACTCTTTCGTTATTGTTGGTGAG
AAAGGCCATGTCAAATTTTCAGTTTTTAACAATGGGCCGATCGTTTTGAC
GACCCGGAAGGAGGGCAAGGATGATGCGGAGAAAGGTATGGTGGTGGAAA
CAATTGGAGGATTCGATGTGAAAGCATCGCCGCATGTGCATTTGCCGCTG
ATTGCCGCCGTGACGGATGATGTGCGGAGGTGGAAGGAGGCAAAGAAAGC
AGCAGCAACAGCGAAGACGAAATGTGACGTTAGCATTATCAAGGACAAAA
ATGGGGATGAGGAGGAGAAGGAGGAGAAGGAGGAGATTGAGTGGCAGTGT
CGGAGCACAGGGGCGTCGGCGTTGCGAACGAGTGAAGTGATGGATAAGGT
GTTGGTTGCTTACTATGGAGGAACAAGGGATGATGCGTTTTGGACTCGGC
CTGAGACGTGGGACATGCCGATTTGATGTGGTTGCTACGCTGCTGTCAGA
TGAAGTATTGAAAAGAAACTGTTTATAAGATGAAGTCTGGGTGCAATCGT
GTGAAGACATAGGAAGAAAAAAGACAGTATGCA

Coding sequence (CDS) from alignment at scaffold_19:173368..175150-

>mRNA_7305 ID=mRNA_7305|Name=jgi.p|Nanoce1779_2|598174|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_19:173368..175150- (Nannochloropsis oceanica)
ATGCTCGACCTCCTGCCCCTCGATTGCGGCGTCTGTCTTTTTTGTGGTCC
TCGACCGAAGCTACAAATTTGTTATCGATCCCTGGCGGATGTAAATCATT
TCCCTCTCCCTATATCTCTTCGCAACACAGCTATGTTACCCTCCACCACC
TCTCCCCCCACTACCACCGTGCGCTGGGGCATTATCGGCTGCGGGGACGT
CGTCGAAGTCAAGTCGGGGCCCGCATTTAACAAGGTCCCAAACAGTTGCC
TTAAGGCTGTCATGCGCCGTAACGGTGACTTAGCCAAGTCTTTTGCACAA
CGTCATCATGTCCCTTTGTTTTTTTCGGACCCTCAGCAGTTGCTTGACTG
CGAGCAAGTCGATGCTGTTTATATCGCTACTCCTCCAGGCAACCACAAAG
AGCTTGCATTGCTATGTGCTACGATGGGTAAACCTACTTTAGTTGAAAAA
CCCATGGCAAGGTGTGCGGTGGAATGTAGGGAGATGATACGAGGATTCAA
TCGGGTGAGTTTGCCTTTATTTGTTGCGTATTATCGACGGCATTTACCTA
AGTTTGAGGCTGTGCATACGATTTTGAAAGAGGGTAAATTGGGAAAGATT
ACGGAGGTGAGGCTTTTCTGCTCCCGCTTGCGGCCGATGCCCAAGGAGAG
AGGGGAGGGACGTAAGGAGGAGTGGAGGGTGGATGCTGCAGTAGCGGGGG
GAGGCTTGTTTCTGGACTTGGGGAGTCATATGCTTGATCTCGTCGATTGG
TTGTTTGGGCCGGTGCCGTTGGAGAGTGTGAAAGGTATGGCAGGATGTAC
GAGAAGCTGTAGTAGCATCAGCAGGAACAGCATCAGTAGCAGCAGAAGTA
ATGGTCACAGTACTTCTTCATCATCTTCCTTTTCCTCATCCTCCACTCCG
AAAAATCGAACGGCGGCTGACGTGGAAGACCAAGTCCGCATGGTATTCCG
AACAAAAGAAGGGGCTTTGGGGATGGGCTCGTGGAATTTTGCTTCGTCTA
TCGAAGAGGACTCTTTCGTTATTGTTGGTGAGAAAGGCCATGTCAAATTT
TCAGTTTTTAACAATGGGCCGATCGTTTTGACGACCCGGAAGGAGGGCAA
GGATGATGCGGAGAAAGGTATGGTGGTGGAAACAATTGGAGGATTCGATG
TGAAAGCATCGCCGCATGTGCATTTGCCGCTGATTGCCGCCGTGACGGAT
GATGTGCGGAGGTGGAAGGAGGCAAAGAAAGCAGCAGCAACAGCGAAGAC
GAAATGTGACGTTAGCATTATCAAGGACAAAAATGGGGATGAGGAGGAGA
AGGAGGAGAAGGAGGAGATTGAGTGGCAGTGTCGGAGCACAGGGGCGTCG
GCGTTGCGAACGAGTGAAGTGATGGATAAGGTGTTGGTTGCTTACTATGG
AGGAACAAGGGATGATGCGTTTTGGACTCGGCCTGAGACGTGGGACATGC
CGATTTGA

Synonyms

Publications