jgi.p|Nanoce1779_2|598169, mRNA_7304 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598169
Unique Name	mRNA_7304
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2030
Alignment location	scaffold_19:171309..173338 +

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Properties


Property Name	Value
TranscriptId	598255
Track	FilteredModels2
ProteinId	598169

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:171309..173338 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598169	gene_7304	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598169	mRNA_7304-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7304	CDS_7304	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:171309..173338+
coding sequence from alignment at scaffold_19:171309..173338+

mRNA sequence

>mRNA_7304 ID=mRNA_7304|Name=jgi.p|Nanoce1779_2|598169|organism=Nannochloropsis oceanica|type=mRNA|length=2030bp
AACAGGCGCAACTTCTAAGTATCCCCCGCGACCATGGCAACCTCCCGGCT
CCTGCGGCTGGTCATCGTGCTGCTGCTACTGGAGCTACTGTCGTGCAGAG
CCGTCTTCTTGTCGTCGCGGCCGTCAGCTTTTATCCTGCCGCCTGCCGTG
TCGCATACAGTGAGAAGGCATAAGCACCTCCCGCCATCCCAAGCTGTCGT
CCAAGCGCAGTACGAGCAGGTCTCCCGTGCCACCTTTCCCGGGGTCCTGG
AGCGCATCCGGTGCATTGGCAAGGAGGCAGCCTTCTTTTCACTTGACACC
GAGTTCACCGGCTACAAACAAGACAACAGGGATGAATACTTCGATACGGT
GCAGCAGCGTTACATTAAAAAAAAGGGCGTGGCCGAGAACTACCTCGTCG
TGCAAATGGGATTATCCGCCTTTGTCTGGGACGCGGCGCTGGGTGACTAC
AAGGCTTATACGTGGAACATTCACATATATCCTTCCACGCTGCAGAGCGA
CCGTATTTTTTCGTGTGACGCTGCATCCCTTAGTTTTCTGCGTTCTCACA
ACCTGGACTTCAACCAGTGGCTTGACGGCGTCCCTTTCCTGGCAGTCGAC
CAAGAAGCCAGCCTCCGAAAGCAAGTAGAGGACCAAGCCGAGTGGGACCT
GAAAGCGAGCTTTGGTGGAGGAAAGAAACCAACACGTAGCCCTTTGGACC
CCAACGCAGATGCGGAGACGGTGGAGCTACACAAGCGACTAAGCGAGGCC
CTCGACGACTTGAAGCCGGGAAGTGCCCCGTTCCTCCTCCCCCAAGGCAT
GCAATGGTTCCGGAAAAAGATGGTCGAAAACACCATATGGCGACACCCCC
GAAAAGCCAACCTGTGGCTGGAAGCCGTTGTACCACCAGTAGCTTTATCG
AATGGCAACGAAACAGCTGCACCGACAACCCCCCCGACGCCCCTTCCCTT
CCACCAACAACAATTGCAAGTTCGTTACGTCACGAACGACGAGCGAGCCA
CGTGCGTGAATATGAAGAAAAGTCGGGCAATAGCTGAGATAGAGGAAGCT
GCCGGGGCGATGCGTATTATTCAAGTTGTCAAGGACTCAGGTCGGCCTTT
GATAGGACATAATTTTCTTTTAGATCTTCTCTTCCTGTACAGCCACTTTG
TCAAGCCCACATTGCCTGATACTGCTATGGGGTTTAAAAACAAATTGCAG
CAGTTGTTTCCCCCCATCTATGATACCAAGGTATTGGCAAAAGGATTAGG
GGTGGCTGACAGCCAGGGAGACACGAACTTGGAAGGGCTCTATAAAAGCG
AGGGAGGGGCGGAGGTAGAGTTGGAGGGTGGGGAGGGAAATGGAGGAGCA
GCGCATGAGGCCGGTCACGATGCCTTTATGACGGGTGTAGTTTTTGCAAG
TCTGTTGCGACGGGCCAGGAGTAGGGTGGGGGAGGAAGCAGTATCGGGTG
CGAGTGTCAGGAGCAGTAATAGTATGCCTAGTCTGGCGTATGCCGAGGAA
TGGGCGCACAAGGTGTTTATGCGCATGACGGACGTTGACACTTTTGAACT
ACGAAATTTCAAGCAGGTCCCAGATCGCTCGCGGGTATTTCACGTACGTA
CCCAAGGCACTGCTTCCTTACCTTTGCTACAGCATCGGGAGTTAAGAGAG
GCGTTTGCTTCGCTCGGTCCTTTGCAGATTAAGGCGCTGGGGAAACATGA
GGCATACGTGGTGTTTCAGGACTTGACACGGCCGCCGCCCGAAGTAGAGA
TGATGAAAAAGTTGGTGGTGAATTTGGGTAGCCAGGCGGGCGGAGGGTTG
GATATCATGACGTATGAGGAAAGAAGGGTGGCCTTGGGTATTCTGTGGTA
GTGCTTGGTTGGTGAAATGGAGGAAAATATACCAATAGAGGAAAATGATA
TGGAAGCAAATATATTTTTCGTATTGTCACGGATTAGATAGGCGAGCAGA
AACAAAGCATGAACGATAGAGACAGAAAGAGAATTGAAATATTTCTCTAT
ATATACAAGGCATAATTACAAATTTCTGAA

protein sequence of jgi.p|Nanoce1779_2|598169

>mRNA_7304-protein ID=mRNA_7304-protein|Name=jgi.p|Nanoce1779_2|598169|organism=Nannochloropsis oceanica|type=polypeptide|length=606bp
MATSRLLRLVIVLLLLELLSCRAVFLSSRPSAFILPPAVSHTVRRHKHLP
PSQAVVQAQYEQVSRATFPGVLERIRCIGKEAAFFSLDTEFTGYKQDNRD
EYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYP
STLQSDRIFSCDAASLSFLRSHNLDFNQWLDGVPFLAVDQEASLRKQVED
QAEWDLKASFGGGKKPTRSPLDPNADAETVELHKRLSEALDDLKPGSAPF
LLPQGMQWFRKKMVENTIWRHPRKANLWLEAVVPPVALSNGNETAAPTTP
PTPLPFHQQQLQVRYVTNDERATCVNMKKSRAIAEIEEAAGAMRIIQVVK
DSGRPLIGHNFLLDLLFLYSHFVKPTLPDTAMGFKNKLQQLFPPIYDTKV
LAKGLGVADSQGDTNLEGLYKSEGGAEVELEGGEGNGGAAHEAGHDAFMT
GVVFASLLRRARSRVGEEAVSGASVRSSNSMPSLAYAEEWAHKVFMRMTD
VDTFELRNFKQVPDRSRVFHVRTQGTASLPLLQHRELREAFASLGPLQIK
ALGKHEAYVVFQDLTRPPPEVEMMKKLVVNLGSQAGGGLDIMTYEERRVA
LGILW*

mRNA from alignment at scaffold_19:171309..173338+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7304 ID=mRNA_7304|Name=jgi.p|Nanoce1779_2|598169|organism=Nannochloropsis oceanica|type=mRNA|length=2030bp|location=Sequence derived from alignment at scaffold_19:171309..173338+ (Nannochloropsis oceanica)
AACAGGCGCAACTTCTAAGTATCCCCCGCGACCATGGCAACCTCCCGGCT
CCTGCGGCTGGTCATCGTGCTGCTGCTACTGGAGCTACTGTCGTGCAGAG
CCGTCTTCTTGTCGTCGCGGCCGTCAGCTTTTATCCTGCCGCCTGCCGTG
TCGCATACAGTGAGAAGGCATAAGCACCTCCCGCCATCCCAAGCTGTCGT
CCAAGCGCAGTACGAGCAGGTCTCCCGTGCCACCTTTCCCGGGGTCCTGG
AGCGCATCCGGTGCATTGGCAAGGAGGCAGCCTTCTTTTCACTTGACACC
GAGTTCACCGGCTACAAACAAGACAACAGGGATGAATACTTCGATACGGT
GCAGCAGCGTTACATTAAAAAAAAGGGCGTGGCCGAGAACTACCTCGTCG
TGCAAATGGGATTATCCGCCTTTGTCTGGGACGCGGCGCTGGGTGACTAC
AAGGCTTATACGTGGAACATTCACATATATCCTTCCACGCTGCAGAGCGA
CCGTATTTTTTCGTGTGACGCTGCATCCCTTAGTTTTCTGCGTTCTCACA
ACCTGGACTTCAACCAGTGGCTTGACGGCGTCCCTTTCCTGGCAGTCGAC
CAAGAAGCCAGCCTCCGAAAGCAAGTAGAGGACCAAGCCGAGTGGGACCT
GAAAGCGAGCTTTGGTGGAGGAAAGAAACCAACACGTAGCCCTTTGGACC
CCAACGCAGATGCGGAGACGGTGGAGCTACACAAGCGACTAAGCGAGGCC
CTCGACGACTTGAAGCCGGGAAGTGCCCCGTTCCTCCTCCCCCAAGGCAT
GCAATGGTTCCGGAAAAAGATGGTCGAAAACACCATATGGCGACACCCCC
GAAAAGCCAACCTGTGGCTGGAAGCCGTTGTACCACCAGTAGCTTTATCG
AATGGCAACGAAACAGCTGCACCGACAACCCCCCCGACGCCCCTTCCCTT
CCACCAACAACAATTGCAAGTTCGTTACGTCACGAACGACGAGCGAGCCA
CGTGCGTGAATATGAAGAAAAGTCGGGCAATAGCTGAGATAGAGGAAGCT
GCCGGGGCGATGCGTATTATTCAAGTTGTCAAGGACTCAGGTCGGCCTTT
GATAGGACATAATTTTCTTTTAGATCTTCTCTTCCTGTACAGCCACTTTG
TCAAGCCCACATTGCCTGATACTGCTATGGGGTTTAAAAACAAATTGCAG
CAGTTGTTTCCCCCCATCTATGATACCAAGGTATTGGCAAAAGGATTAGG
GGTGGCTGACAGCCAGGGAGACACGAACTTGGAAGGGCTCTATAAAAGCG
AGGGAGGGGCGGAGGTAGAGTTGGAGGGTGGGGAGGGAAATGGAGGAGCA
GCGCATGAGGCCGGTCACGATGCCTTTATGACGGGTGTAGTTTTTGCAAG
TCTGTTGCGACGGGCCAGGAGTAGGGTGGGGGAGGAAGCAGTATCGGGTG
CGAGTGTCAGGAGCAGTAATAGTATGCCTAGTCTGGCGTATGCCGAGGAA
TGGGCGCACAAGGTGTTTATGCGCATGACGGACGTTGACACTTTTGAACT
ACGAAATTTCAAGCAGGTCCCAGATCGCTCGCGGGTATTTCACGTACGTA
CCCAAGGCACTGCTTCCTTACCTTTGCTACAGCATCGGGAGTTAAGAGAG
GCGTTTGCTTCGCTCGGTCCTTTGCAGATTAAGGCGCTGGGGAAACATGA
GGCATACGTGGTGTTTCAGGACTTGACACGGCCGCCGCCCGAAGTAGAGA
TGATGAAAAAGTTGGTGGTGAATTTGGGTAGCCAGGCGGGCGGAGGGTTG
GATATCATGACGTATGAGGAAAGAAGGGTGGCCTTGGGTATTCTGTGGTA
GTGCTTGGTTGGTGAAATGGAGGAAAATATACCAATAGAGGAAAATGATA
TGGAAGCAAATATATTTTTCGTATTGTCACGGATTAGATAGGCGAGCAGA
AACAAAGCATGAACGATAGAGACAGAAAGAGAATTGAAATATTTCTCTAT
ATATACAAGGCATAATTACAAATTTCTGAA

Coding sequence (CDS) from alignment at scaffold_19:171309..173338+

>mRNA_7304 ID=mRNA_7304|Name=jgi.p|Nanoce1779_2|598169|organism=Nannochloropsis oceanica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_19:171309..173338+ (Nannochloropsis oceanica)
ATGGCAACCTCCCGGCTCCTGCGGCTGGTCATCGTGCTGCTGCTACTGGA
GCTACTGTCGTGCAGAGCCGTCTTCTTGTCGTCGCGGCCGTCAGCTTTTA
TCCTGCCGCCTGCCGTGTCGCATACAGTGAGAAGGCATAAGCACCTCCCG
CCATCCCAAGCTGTCGTCCAAGCGCAGTACGAGCAGGTCTCCCGTGCCAC
CTTTCCCGGGGTCCTGGAGCGCATCCGGTGCATTGGCAAGGAGGCAGCCT
TCTTTTCACTTGACACCGAGTTCACCGGCTACAAACAAGACAACAGGGAT
GAATACTTCGATACGGTGCAGCAGCGTTACATTAAAAAAAAGGGCGTGGC
CGAGAACTACCTCGTCGTGCAAATGGGATTATCCGCCTTTGTCTGGGACG
CGGCGCTGGGTGACTACAAGGCTTATACGTGGAACATTCACATATATCCT
TCCACGCTGCAGAGCGACCGTATTTTTTCGTGTGACGCTGCATCCCTTAG
TTTTCTGCGTTCTCACAACCTGGACTTCAACCAGTGGCTTGACGGCGTCC
CTTTCCTGGCAGTCGACCAAGAAGCCAGCCTCCGAAAGCAAGTAGAGGAC
CAAGCCGAGTGGGACCTGAAAGCGAGCTTTGGTGGAGGAAAGAAACCAAC
ACGTAGCCCTTTGGACCCCAACGCAGATGCGGAGACGGTGGAGCTACACA
AGCGACTAAGCGAGGCCCTCGACGACTTGAAGCCGGGAAGTGCCCCGTTC
CTCCTCCCCCAAGGCATGCAATGGTTCCGGAAAAAGATGGTCGAAAACAC
CATATGGCGACACCCCCGAAAAGCCAACCTGTGGCTGGAAGCCGTTGTAC
CACCAGTAGCTTTATCGAATGGCAACGAAACAGCTGCACCGACAACCCCC
CCGACGCCCCTTCCCTTCCACCAACAACAATTGCAAGTTCGTTACGTCAC
GAACGACGAGCGAGCCACGTGCGTGAATATGAAGAAAAGTCGGGCAATAG
CTGAGATAGAGGAAGCTGCCGGGGCGATGCGTATTATTCAAGTTGTCAAG
GACTCAGGTCGGCCTTTGATAGGACATAATTTTCTTTTAGATCTTCTCTT
CCTGTACAGCCACTTTGTCAAGCCCACATTGCCTGATACTGCTATGGGGT
TTAAAAACAAATTGCAGCAGTTGTTTCCCCCCATCTATGATACCAAGGTA
TTGGCAAAAGGATTAGGGGTGGCTGACAGCCAGGGAGACACGAACTTGGA
AGGGCTCTATAAAAGCGAGGGAGGGGCGGAGGTAGAGTTGGAGGGTGGGG
AGGGAAATGGAGGAGCAGCGCATGAGGCCGGTCACGATGCCTTTATGACG
GGTGTAGTTTTTGCAAGTCTGTTGCGACGGGCCAGGAGTAGGGTGGGGGA
GGAAGCAGTATCGGGTGCGAGTGTCAGGAGCAGTAATAGTATGCCTAGTC
TGGCGTATGCCGAGGAATGGGCGCACAAGGTGTTTATGCGCATGACGGAC
GTTGACACTTTTGAACTACGAAATTTCAAGCAGGTCCCAGATCGCTCGCG
GGTATTTCACGTACGTACCCAAGGCACTGCTTCCTTACCTTTGCTACAGC
ATCGGGAGTTAAGAGAGGCGTTTGCTTCGCTCGGTCCTTTGCAGATTAAG
GCGCTGGGGAAACATGAGGCATACGTGGTGTTTCAGGACTTGACACGGCC
GCCGCCCGAAGTAGAGATGATGAAAAAGTTGGTGGTGAATTTGGGTAGCC
AGGCGGGCGGAGGGTTGGATATCATGACGTATGAGGAAAGAAGGGTGGCC
TTGGGTATTCTGTGGTAG

Synonyms

Publications