jgi.p|Nanoce1779_2|598167, mRNA_7303 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598167
Unique NamemRNA_7303
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1172
Alignment locationscaffold_19:169797..170968 +

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Properties
Property NameValue
TranscriptId598253
TrackFilteredModels2
ProteinId598167
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:169797..170968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598167gene_7303Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598167mRNA_7303-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7303CDS_7303Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7303 ID=mRNA_7303|Name=jgi.p|Nanoce1779_2|598167|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp
GCAACAGGAGCAACAGCAACAATAACAGCATCACTGTCTTCCGCAGTCGC
GACCTACAGGAATGGCATGCCTTGCCCGCCACAGACCGACCCCGGCTAGT
GGACGTGCGTTCAGAAGCCGCTTTTGAGGCCTGCCGCCTCTCGCCAAGTA
TAAATCTGCCTTTTGATAGCCTCTTGAATCTTTTATTTGAGCTCCCGGAA
CCCAGCTTGTCCTTAGCGGTGATAGCCACCACGTGGGAGGAAGGCGAACG
AGCGGTGGCCCTGCTCAAAAACCGGGATTGGCACCATGTCTCCTTCATCT
TCGTCGGTGGCGAGGACGTGGCCGAGGGAGAAAACAAGGATGAGCTATGG
ACAGCAGCTAAAGCGCTCGGTTTGTTGACATCTGGGGCTGTCGGACCGCG
TGACCGCAATATTTTGTACACTCCTAACCCCTTCTTGGCATCCTTCATAG
ACTATATGGAGGAAGCACTAGCTGCTGCTCCTTCACCTCTCCATTATCCT
CCTCCTCCTCTTCCTCTTTCTACGTCCTTTTCCTCTTCGTCAGTGACCAA
TCTGGCCACTTCTCCTCCTCCTCCTCCTCTTTCTTCTTTGTCCGCTGTTG
GTAGAGTTTTAACCTGCTGTGACGTCGGCTGTGGCGCGGGGCGGGATGGG
GTGTGGCTTGCCAAGCGAGGAAAGGGGTGGCGAGTGCATTGCATGGATCG
TTTGCCACGGTGCTTAGATCGCGTACAGCGTCTGGCCGCGCGTCATGGTG
TCACGGATTCGGTGGATATCGAAGCCAGCGTTATCAAAGGTACAAGCGTG
GTGAGGTCTTCAGTTTCGCCTTCCTTTGAAACGAAGCAATATGACTTAGT
TCTGGCCATTCGGTTTTTGGAAAGAGATTTTTTTCCTGCCCTGGGTGCAA
TGGTCCGTCCAGGGGGTGGGTTTTTGTTGTTTGTGTCGTTTGTGGCGAGG
GAGGATGGCGTGCCATACGAACACCCGAAGGACCCACGGAAGGTGCTGGA
GCACGGGGAACTTGCGCGGGTGTTTGGAGCTGAAGGAGGGATAGGCTTTG
AGACAGTAGAGGACCGCTTGGAAACTTTACCGGATGGACGTGTCTTGAGC
GCCTTTTTGGCGCGGCGCTTATGATTGTAGATAAATTGAAAAGTAAAGTT
AAGAATTAAGCACACATGATCA
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protein sequence of jgi.p|Nanoce1779_2|598167

>mRNA_7303-protein ID=mRNA_7303-protein|Name=jgi.p|Nanoce1779_2|598167|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MEEALAAAPSPLHYPPPPLPLSTSFSSSSVTNLATSPPPPPLSSLSAVGR
VLTCCDVGCGAGRDGVWLAKRGKGWRVHCMDRLPRCLDRVQRLAARHGVT
DSVDIEASVIKGTSVVRSSVSPSFETKQYDLVLAIRFLERDFFPALGAMV
RPGGGFLLFVSFVAREDGVPYEHPKDPRKVLEHGELARVFGAEGGIGFET
VEDRLETLPDGRVLSAFLARRL*
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mRNA from alignment at scaffold_19:169797..170968+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7303 ID=mRNA_7303|Name=jgi.p|Nanoce1779_2|598167|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp|location=Sequence derived from alignment at scaffold_19:169797..170968+ (Nannochloropsis oceanica)
GCAACAGGAGCAACAGCAACAATAACAGCATCACTGTCTTCCGCAGTCGC
GACCTACAGGAATGGCATGCCTTGCCCGCCACAGACCGACCCCGGCTAGT
GGACGTGCGTTCAGAAGCCGCTTTTGAGGCCTGCCGCCTCTCGCCAAGTA
TAAATCTGCCTTTTGATAGCCTCTTGAATCTTTTATTTGAGCTCCCGGAA
CCCAGCTTGTCCTTAGCGGTGATAGCCACCACGTGGGAGGAAGGCGAACG
AGCGGTGGCCCTGCTCAAAAACCGGGATTGGCACCATGTCTCCTTCATCT
TCGTCGGTGGCGAGGACGTGGCCGAGGGAGAAAACAAGGATGAGCTATGG
ACAGCAGCTAAAGCGCTCGGTTTGTTGACATCTGGGGCTGTCGGACCGCG
TGACCGCAATATTTTGTACACTCCTAACCCCTTCTTGGCATCCTTCATAG
ACTATATGGAGGAAGCACTAGCTGCTGCTCCTTCACCTCTCCATTATCCT
CCTCCTCCTCTTCCTCTTTCTACGTCCTTTTCCTCTTCGTCAGTGACCAA
TCTGGCCACTTCTCCTCCTCCTCCTCCTCTTTCTTCTTTGTCCGCTGTTG
GTAGAGTTTTAACCTGCTGTGACGTCGGCTGTGGCGCGGGGCGGGATGGG
GTGTGGCTTGCCAAGCGAGGAAAGGGGTGGCGAGTGCATTGCATGGATCG
TTTGCCACGGTGCTTAGATCGCGTACAGCGTCTGGCCGCGCGTCATGGTG
TCACGGATTCGGTGGATATCGAAGCCAGCGTTATCAAAGGTACAAGCGTG
GTGAGGTCTTCAGTTTCGCCTTCCTTTGAAACGAAGCAATATGACTTAGT
TCTGGCCATTCGGTTTTTGGAAAGAGATTTTTTTCCTGCCCTGGGTGCAA
TGGTCCGTCCAGGGGGTGGGTTTTTGTTGTTTGTGTCGTTTGTGGCGAGG
GAGGATGGCGTGCCATACGAACACCCGAAGGACCCACGGAAGGTGCTGGA
GCACGGGGAACTTGCGCGGGTGTTTGGAGCTGAAGGAGGGATAGGCTTTG
AGACAGTAGAGGACCGCTTGGAAACTTTACCGGATGGACGTGTCTTGAGC
GCCTTTTTGGCGCGGCGCTTATGATTGTAGATAAATTGAAAAGTAAAGTT
AAGAATTAAGCACACATGATCA
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Coding sequence (CDS) from alignment at scaffold_19:169797..170968+

>mRNA_7303 ID=mRNA_7303|Name=jgi.p|Nanoce1779_2|598167|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at scaffold_19:169797..170968+ (Nannochloropsis oceanica)
ATGGAGGAAGCACTAGCTGCTGCTCCTTCACCTCTCCATTATCCTCCTCC
TCCTCTTCCTCTTTCTACGTCCTTTTCCTCTTCGTCAGTGACCAATCTGG
CCACTTCTCCTCCTCCTCCTCCTCTTTCTTCTTTGTCCGCTGTTGGTAGA
GTTTTAACCTGCTGTGACGTCGGCTGTGGCGCGGGGCGGGATGGGGTGTG
GCTTGCCAAGCGAGGAAAGGGGTGGCGAGTGCATTGCATGGATCGTTTGC
CACGGTGCTTAGATCGCGTACAGCGTCTGGCCGCGCGTCATGGTGTCACG
GATTCGGTGGATATCGAAGCCAGCGTTATCAAAGGTACAAGCGTGGTGAG
GTCTTCAGTTTCGCCTTCCTTTGAAACGAAGCAATATGACTTAGTTCTGG
CCATTCGGTTTTTGGAAAGAGATTTTTTTCCTGCCCTGGGTGCAATGGTC
CGTCCAGGGGGTGGGTTTTTGTTGTTTGTGTCGTTTGTGGCGAGGGAGGA
TGGCGTGCCATACGAACACCCGAAGGACCCACGGAAGGTGCTGGAGCACG
GGGAACTTGCGCGGGTGTTTGGAGCTGAAGGAGGGATAGGCTTTGAGACA
GTAGAGGACCGCTTGGAAACTTTACCGGATGGACGTGTCTTGAGCGCCTT
TTTGGCGCGGCGCTTATGA
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Synonyms
Publications