jgi.p|Nanoce1779_2|130052, mRNA_7302 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|130052
Unique NamemRNA_7302
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1101
Alignment locationscaffold_19:168379..169479 +

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Properties
Property NameValue
TranscriptId130138
TrackFilteredModels2
ProteinId130052
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:168379..169479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|130052gene_7302Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|130052mRNA_7302-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7302CDS_7302Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7302 ID=mRNA_7302|Name=jgi.p|Nanoce1779_2|130052|organism=Nannochloropsis oceanica|type=mRNA|length=1101bp
CCTCCCCGCCCTCCGTCACTCAACCCTCCCCGCCCTCCAGATACTCATAG
ACGGCAACTTCATTTACATGGCTCTCAAAGTCAAAATTGACATCAAAGAC
CGCCTCAAGAAAATGCTGCTTGGTGAGAGCTTCGTCTGTTGCATCCCTAA
AGCAGTCTTAGACGAGCTAGCTGCCTTAGGCCCTGCCTTCCACCCTGCCC
TTGAGTGGGCACGCACCTGTTGCGAGGTCCTCTGCAACCCCCCTCCCGTA
CAAAACGACGATGACGTGGACCATGACAACGAGAAGCAACGAGACACAAT
GAGCGCTGGAGAGGCCATCCGCACCTTGATTGGCGAAGAGAACAAAGACA
AATACATGGTGGCCACCCAAGACCAAGACCTAAGATCCCAGCTTCGTCAC
GTCCCCTCCGTCGGGCTGCTCTTCGTCTCCCGCGCCGTCTTATTAATGGA
AGCCCCCTCTAACGCCTCAAAGGCTGTGTCGGCCAAGCAAGAGGGGGAGA
AGTTCCGACTTTTAAGCGAGGAGGAACGCTTGCTCTTGGCTAACATCAGA
ATGAAGGACAAGGATGCCGCCTCTGGTGAAAGGACGGTTGGAAGTGGGGA
GCAGCAGCAGCAGCAGCAGCAGGAGGCGGGGATGGGTAGGAAGACTCGCG
CAAAAAAGAAACCGAAAGGACCCAATCCGCTGTCAGTAAAAAAGTCTGAC
AAGAGCGAGATGAAGAAGAAGACGACGTCTACAACTACGCCTATTAAGAG
TGGGGGGGCAAAAAAGGAGATGAGCGGTGGTTGTGGTAATGGAGGACGCG
GAAGAGAAGGAGGAGGAGTAGGAGGAGGAGAGTCAGGAGGAGGGAGTGGC
AAGAAACGCAAGCGCAAAAAGAGGAATGGCGCTCCTGCCATCGGTGGAGG
AGGGAAGGTTTGAAAACAATGAGACGGCACAGGAGGAGAATGAAGAGAAG
GCAGGCACTATAACACAGTTTATACACAGGACTCTGTAAAATCGAAACGG
AAGCAGACAGCTGCTGGGTAACATTGGCATCATACACATCAAGTGAAACA
GCCATTGCATTCGAAAATAAGTTAAGACGGTTCAAAAAAGCTTGGGGCTG
C
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protein sequence of jgi.p|Nanoce1779_2|130052

>mRNA_7302-protein ID=mRNA_7302-protein|Name=jgi.p|Nanoce1779_2|130052|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MALKVKIDIKDRLKKMLLGESFVCCIPKAVLDELAALGPAFHPALEWART
CCEVLCNPPPVQNDDDVDHDNEKQRDTMSAGEAIRTLIGEENKDKYMVAT
QDQDLRSQLRHVPSVGLLFVSRAVLLMEAPSNASKAVSAKQEGEKFRLLS
EEERLLLANIRMKDKDAASGERTVGSGEQQQQQQQEAGMGRKTRAKKKPK
GPNPLSVKKSDKSEMKKKTTSTTTPIKSGGAKKEMSGGCGNGGRGREGGG
VGGGESGGGSGKKRKRKKRNGAPAIGGGGKV*
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mRNA from alignment at scaffold_19:168379..169479+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7302 ID=mRNA_7302|Name=jgi.p|Nanoce1779_2|130052|organism=Nannochloropsis oceanica|type=mRNA|length=1101bp|location=Sequence derived from alignment at scaffold_19:168379..169479+ (Nannochloropsis oceanica)
CCTCCCCGCCCTCCGTCACTCAACCCTCCCCGCCCTCCAGATACTCATAG
ACGGCAACTTCATTTACATGGCTCTCAAAGTCAAAATTGACATCAAAGAC
CGCCTCAAGAAAATGCTGCTTGGTGAGAGCTTCGTCTGTTGCATCCCTAA
AGCAGTCTTAGACGAGCTAGCTGCCTTAGGCCCTGCCTTCCACCCTGCCC
TTGAGTGGGCACGCACCTGTTGCGAGGTCCTCTGCAACCCCCCTCCCGTA
CAAAACGACGATGACGTGGACCATGACAACGAGAAGCAACGAGACACAAT
GAGCGCTGGAGAGGCCATCCGCACCTTGATTGGCGAAGAGAACAAAGACA
AATACATGGTGGCCACCCAAGACCAAGACCTAAGATCCCAGCTTCGTCAC
GTCCCCTCCGTCGGGCTGCTCTTCGTCTCCCGCGCCGTCTTATTAATGGA
AGCCCCCTCTAACGCCTCAAAGGCTGTGTCGGCCAAGCAAGAGGGGGAGA
AGTTCCGACTTTTAAGCGAGGAGGAACGCTTGCTCTTGGCTAACATCAGA
ATGAAGGACAAGGATGCCGCCTCTGGTGAAAGGACGGTTGGAAGTGGGGA
GCAGCAGCAGCAGCAGCAGCAGGAGGCGGGGATGGGTAGGAAGACTCGCG
CAAAAAAGAAACCGAAAGGACCCAATCCGCTGTCAGTAAAAAAGTCTGAC
AAGAGCGAGATGAAGAAGAAGACGACGTCTACAACTACGCCTATTAAGAG
TGGGGGGGCAAAAAAGGAGATGAGCGGTGGTTGTGGTAATGGAGGACGCG
GAAGAGAAGGAGGAGGAGTAGGAGGAGGAGAGTCAGGAGGAGGGAGTGGC
AAGAAACGCAAGCGCAAAAAGAGGAATGGCGCTCCTGCCATCGGTGGAGG
AGGGAAGGTTTGAAAACAATGAGACGGCACAGGAGGAGAATGAAGAGAAG
GCAGGCACTATAACACAGTTTATACACAGGACTCTGTAAAATCGAAACGG
AAGCAGACAGCTGCTGGGTAACATTGGCATCATACACATCAAGTGAAACA
GCCATTGCATTCGAAAATAAGTTAAGACGGTTCAAAAAAGCTTGGGGCTG
C
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Coding sequence (CDS) from alignment at scaffold_19:168379..169479+

>mRNA_7302 ID=mRNA_7302|Name=jgi.p|Nanoce1779_2|130052|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at scaffold_19:168379..169479+ (Nannochloropsis oceanica)
ATGGCTCTCAAAGTCAAAATTGACATCAAAGACCGCCTCAAGAAAATGCT
GCTTGGTGAGAGCTTCGTCTGTTGCATCCCTAAAGCAGTCTTAGACGAGC
TAGCTGCCTTAGGCCCTGCCTTCCACCCTGCCCTTGAGTGGGCACGCACC
TGTTGCGAGGTCCTCTGCAACCCCCCTCCCGTACAAAACGACGATGACGT
GGACCATGACAACGAGAAGCAACGAGACACAATGAGCGCTGGAGAGGCCA
TCCGCACCTTGATTGGCGAAGAGAACAAAGACAAATACATGGTGGCCACC
CAAGACCAAGACCTAAGATCCCAGCTTCGTCACGTCCCCTCCGTCGGGCT
GCTCTTCGTCTCCCGCGCCGTCTTATTAATGGAAGCCCCCTCTAACGCCT
CAAAGGCTGTGTCGGCCAAGCAAGAGGGGGAGAAGTTCCGACTTTTAAGC
GAGGAGGAACGCTTGCTCTTGGCTAACATCAGAATGAAGGACAAGGATGC
CGCCTCTGGTGAAAGGACGGTTGGAAGTGGGGAGCAGCAGCAGCAGCAGC
AGCAGGAGGCGGGGATGGGTAGGAAGACTCGCGCAAAAAAGAAACCGAAA
GGACCCAATCCGCTGTCAGTAAAAAAGTCTGACAAGAGCGAGATGAAGAA
GAAGACGACGTCTACAACTACGCCTATTAAGAGTGGGGGGGCAAAAAAGG
AGATGAGCGGTGGTTGTGGTAATGGAGGACGCGGAAGAGAAGGAGGAGGA
GTAGGAGGAGGAGAGTCAGGAGGAGGGAGTGGCAAGAAACGCAAGCGCAA
AAAGAGGAATGGCGCTCCTGCCATCGGTGGAGGAGGGAAGGTTTGA
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Synonyms
Publications