jgi.p|Nanoce1779_2|598165, mRNA_7301 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598165
Unique NamemRNA_7301
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length3788
Alignment locationscaffold_19:165771..169794 +

Link to JBrowse

Properties
Property NameValue
TranscriptId598251
TrackFilteredModels2
ProteinId598165
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:165771..169794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598165gene_7301Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598165mRNA_7301-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7301CDS_7301Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7301 ID=mRNA_7301|Name=jgi.p|Nanoce1779_2|598165|organism=Nannochloropsis oceanica|type=mRNA|length=3788bp
ACAGAGACATCAAGCCCTCCGTTCTCCTCCCACACCCTTCGCAATCATGT
CTATGGGAGACTATCGCGTGGCGGACATTTCGCTTGCTGACTTCGGCCGC
AAGGAGATCCAGCTTGCCGAGGTTGAAATGCCTGGTCTGATGGCTTGCCG
GGAGGAATTCGGTACGGAGGCCCTCAAGGGTGCCCGCATTGCCGGCTCTT
TGCATATGACCATCCAGACGGCCGTACTCATCGAGACGCTCAAGGCTATG
GGCGGGGACATCCGATGGTGCTCTTGCAACATCTTCTCTACCCAGGACCA
CGCCGCGGCCGCCATTGCCCGGGATGAGTCCGCTGCTGTCTTTGCCTGGA
AGGGCGAGAGCCTTGAGGAGTATTGGGAGTGCACCATGAACGCCATTACG
TGGCCTTCGGACGACGGTAAGGGCGACGGACCTGACCTGATCGTCGATGA
CGGCGGGGACATGACTTTGCTCGTCCACGAGGGGTACAAGGCCGAGGAGC
TGTACGCCAAGGACGGGACCTTGCCCGACCCTGAGTCCACGGACAATGCG
GAGTTTAAGATCGTCCTGACCATCATTGCGCGTGAGCTGCCCAAGTCCCC
CCAAAAGTGGCACAAGGTCGCTGCGCGCATGTTCGGTGTGTCGGAGGAGA
CGACCACGGGTGTGCACCGCCTCTACCTGATGGAGAAGAACAAGACCCTA
CTCTTCCCTGCCATCAACGTCAACGACTCGGTGACCAAGTCCAAATTTGA
CAACTTGTATGGGTGCAAACACTCTCTCCCCGATGGCCTCATGCGCGCCA
CGGACGTTATGCTTGCCGGGAAGCGCGCCGTAATCTGCGGGTATGGAGAT
GTGGGGAAGGGCTGCGCGCAGGCCATGAAGGCTGCGGGCTCCATCGTATA
TGTCACAGAGGTGGATCCTATCTGCGCGTTGCAGGCTGCCATGGAGGGCT
TCCGTGTCGTGCGCATGAGCTCGGTGATCGGCGAGGCGGATATCATTATC
ACCACGACGGGGAATAAGGGGATCATCATGGCGGAGGACATGGCCAAGAT
GAAGAACAACGCCATCATTGGTAACATTGGCCACTTCGACAACGAGCTTG
ACATGGACGGTGTGATGAAGATCGCCAAGCGCGAGAACATCAAGCCCCAA
GTCGACCGTTTCGTCTTCCCGGACGGGCATGGTGTCATTATCCTTGCTGA
GGGCCGTCTCCTCAACTTGGGATGCGCAACTGGCCATCCCTCCTTTGTCA
TGTCTGCCTCCTTTACGAACCAGACCCTTGCTCAGCTCGAGCTTTGGAAG
GAGCGCAGCTCGGGGAAGTACGCCCGCGGGAAGGTGTATGTGCTGCCCAA
GGTGTTGGACGAGAAGGTGGCGCGCTTGCACCTGAGCGCCCTGGGGGTGG
AGCTGACGGAGCTCTCCTCGGAGCAGGCGGAGTATATTGGGGTGAATGTC
GCGGGGCCTTTCAAGCCCGAGGCGTACCGTTACTAAACTGCTCTTGCGCA
TTGCAGGGACTCGGGGAGGGAGGAGAGAGTGGTTCACGCAGCCTCTCAGA
AGCCCTGGGGGAGGCTAACTTGTGCCCTCGTTCTTGTTGGCGCTAATGTT
GCTGGTGCTGGAAATTTTGGGTTGTGCGTATGAAGGTCCTGGAATGCTCC
AGGTTTTGCGTAGGGGGGAAAGAATTAGATGAAGGGTTTTTTGCTCTGTT
TTAATGTTAGGTAGGTGGGTGGGTCGGTGAAGAGAAGAGAGAAAGAAGAG
GAGAGGGCGTCCATCATCACCAGCACCGGCAAAAGAAAAGAACAATCTCT
AAAGCGTTTTCTCGCAGTAGATATATTATGACCTTTATTGTGATCCCGTC
ACTTTTCGTTGCAGGAAAGGTTGGTAACTTCAGGAGAATGAATATAATTG
CTGCCTCTAGTAGAATTACCGTGCTCCATGCGCACAAGTCCTTGCTTCCG
GGACGACTTTATCCCACCGTACACCCTGCCCGTCGTAGGGCTAGATATGT
TATTGGGGGCGAAAGATGTGCGGTGCGGGCACACGTACGTGCCTTGCCTT
TTTCGGCTGCGTAGCTTGGGCGTTGGCGATGCTGTGGTTGCCGTGCAAAG
CCTCCTGTAACGTCTCACTTAACTCACGCACCCTCACCACAATCTTTTCT
CACACATCCATGGATGCATAGGATTAAGCCTCTTCAGGCCCTCCACTAAA
AAAAAAGCGTCCGAGGGATTTAATTGATTGATTGACGGAGGAGCACACTC
AAACCTCCCCACCCTGTTGCCCTGGCCGGCCACCTCTCTGCCCACCACGC
TCACAGCCCACCCCTCACACCAATCTAAGCAATGCGCGTGAACCGGGCCA
AGCAAGTACGAAAATGGTTGCGATTCTACCGCATCGTCTACGGCGTGGCG
CCTCCCTATATGATACTCATAGACGGCAACTTCATTTACATGGCTCTCAA
AGTCAAAATTGACATCAAAGACCGCCTCAAGAAAATGCTGCTTGGTGAGA
GCTTCGTCTGTTGCATCCCTAAAGCAGTCTTAGACGAGCTAGCTGCCTTA
GGCCCTGCCTTCCACCCTGCCCTTGAGTGGGCACGCACCTGTTGCGAGGT
CCTCTGCAACCCCCCTCCCGTACAAAACGACGATGACGTGGACCATGACA
ACGAGAAGCAACGAGACACAATGAGCGCTGGAGAGGCCATCCGCACCTTG
ATTGGCGAAGAGAACAAAGACAAATACATGGTGGCCACCCAAGACCAAGA
CCTAAGATCCCAGCTTCGTCACGTCCCCTCCGTCGGGCTGCTCTTCGTCT
CCCGCGCCGTCTTATTAATGGAAGCCCCCTCTAACGCCTCAAAGGCTGTG
TCGGCCAAGCAAGAGGGGGAGAAGTTCCGACTTTTAAGCGAGGAGGAACG
CTTGCTCTTGGCTAACATCAGAATGAAGGACAAGGATGCCGCCTCTGGTG
AAAGGACGGTTGGAAGTGGGGAGCAGCAGCAGCAGCAGCAGCAGGAGGCG
GGGATGGGTAGGAAGACTCGCGCAAAAAAGAAACCGAAAGGACCCAATCC
GCTGTCAGTAAAAAAGTCTGACAAGAGCGAGATGAAGAAGAAGACGACGT
CTACAACTACGCCTATTAAGAGTGGGGGGGCAAAAAAGGAGATGAGCGGT
GGTTGTGGTAATGGAGGACGCGGAAGAGAAGGAGGAGGAGTAGGAGGAGG
AGAGTCAGGAGGAGGGAGTGGCAAGAAACGCAAGCGCAAAAAGAGGAATG
GCGCTCCTGCCATCGGTGGAGGAGGGAAGGTTTGAAAACAATGAGACGGC
ACAGGAGGAGAATGAAGAGAAGGCAGGCACTATAACACAGTTTATACACA
GGACTCTGTAAAATCGAAACGGAAGCAGACAGCTGCTGGGTAACATTGGC
ATCATACACATCAAGTGAAACAGCCATTGCATTCGAAAATAAGTTAAGAC
GGTTCAAAAAAGCTTGGGGCTGCTGTTTTGTGCTTGACGAGAGGCAGACG
ACAGGAGCAACATCGCAGACAGGAGGCAGGGACAGATTGAGGCCTTCAGG
AATGCGCCGCTTCATCTCTGCTCTGTCTCCCCCTTCCCTCCCCCCCAACA
GGGACTCCATGTATATCGTTGCCGTGTAAAGGCCCATTTAAGTGAAGGGC
GGAAAGGAAGATGGCCGAGGAGGACGACAGCAAAGAGTACCAGTCCCAAG
AGCCCTCCAGCGGCAGTATCAGCGGCAGTCATAGCAACAAGAATAATAGC
AAGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
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protein sequence of jgi.p|Nanoce1779_2|598165

>mRNA_7301-protein ID=mRNA_7301-protein|Name=jgi.p|Nanoce1779_2|598165|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MSMGDYRVADISLADFGRKEIQLAEVEMPGLMACREEFGTEALKGARIAG
SLHMTIQTAVLIETLKAMGGDIRWCSCNIFSTQDHAAAAIARDESAAVFA
WKGESLEEYWECTMNAITWPSDDGKGDGPDLIVDDGGDMTLLVHEGYKAE
ELYAKDGTLPDPESTDNAEFKIVLTIIARELPKSPQKWHKVAARMFGVSE
ETTTGVHRLYLMEKNKTLLFPAINVNDSVTKSKFDNLYGCKHSLPDGLMR
ATDVMLAGKRAVICGYGDVGKGCAQAMKAAGSIVYVTEVDPICALQAAME
GFRVVRMSSVIGEADIIITTTGNKGIIMAEDMAKMKNNAIIGNIGHFDNE
LDMDGVMKIAKRENIKPQVDRFVFPDGHGVIILAEGRLLNLGCATGHPSF
VMSASFTNQTLAQLELWKERSSGKYARGKVYVLPKVLDEKVARLHLSALG
VELTELSSEQAEYIGVNVAGPFKPEAYRY*
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mRNA from alignment at scaffold_19:165771..169794+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7301 ID=mRNA_7301|Name=jgi.p|Nanoce1779_2|598165|organism=Nannochloropsis oceanica|type=mRNA|length=4024bp|location=Sequence derived from alignment at scaffold_19:165771..169794+ (Nannochloropsis oceanica)
ACAGAGACATCAAGCCCTCCGTTCTCCTCCCACACCCTTCGCAATCATGT CTATGGGAGACTATCGCGTGGCGGACATTTCGCTTGCTGACTTCGGCCGC AAGGAGATCCAGCTTGCCGAGGTTGAAATGCCTGGTCTGATGGCTTGCCG GGAGGAATTCGGTACGGAGGCCCTCAAGGGTGCCCGCATTGCCGGCTCTT TGCATATGACCATCCAGACGGCCGTACTCATCGAGACGCTCAAGGCTATG GGCGGGGACATCCGATGGTGCTCTTGCAACATCTTCTCTACCCAGGACCA CGCCGCGGCCGCCATTGCCCGGGATGAGTCCGCTGCTGTCTTTGCCTGGA AGGGCGAGAGCCTTGAGGAGTATTGGGAGTGCACCATGAACGCCATTACG TGGCCTTCGGACGACGGTAAGGGCGACGGACCTGACCTGATCGTCGATGA CGGCGGGGACATGACTTTGCTCGTCCACGAGGGGTACAAGGCCGAGGAGC TGTACGCCAAGGACGGGACCTTGCCCGACCCTGAGTCCACGGACAATGCG GAGTTTAAGATCGTCCTGACCATCATTGCGCGTGAGCTGCCCAAGTCCCC CCAAAAGTGGCACAAGGTCGCTGCGCGCATGTTCGGTGTGTCGGAGGAGA CGACCACGGGTGTGCACCGCCTCTACCTGATGGAGAAGAACAAGACCCTA CTCTTCCCTGCCATCAACGTCAACGACTCGGTGACCAAGTCCAAATTTGA CAACTTGTATGGGTGCAAACACTCTCTCCCCGATGGCCTCATGCGCGCCA CGGACGTTATGCTTGCCGGGAAGCGCGCCGTAATCTGCGGGTATGGAGAT GTGGGGAAGGGCTGCGCGCAGGCCATGAAGGCTGCGGGCTCCATCGTATA TGTCACAGAGGTGGATCCTATCTGCGCGTTGCAGGCTGCCATGGAGGGCT TCCGTGTCGTGCGCATGAGCTCGGTGATCGGCGAGGCGGATATCATTATC ACCACGACGGGGAATAAGGGGATCATCATGGCGGAGGACATGGCCAAGAT GAAGAACAACGCCATCATTGGTAACATTGGCCACTTCGACAACGAGCTTG ACATGGACGGTGTGATGAAGATCGCCAAGCGCGAGAACATCAAGCCCCAA GTCGACCGTTTCGTCTTCCCGGACGGGCATGGTGTCATTATCCTTGCTGA GGGCCGTCTCCTCAACTTGGGATGCGCAACTGGCCATCCCTCCTTTGTCA TGTCTGCCTCCTTTACGAACCAGACCCTTGCTCAGCTCGAGCTTTGGAAG GAGCGCAGCTCGGGGAAGTACGCCCGCGGGAAGGTGTATGTGCTGCCCAA GGTGTTGGACGAGAAGGTGGCGCGCTTGCACCTGAGCGCCCTGGGGGTGG AGCTGACGGAGCTCTCCTCGGAGCAGGCGGAGTATATTGGGGTGAATGTC GCGGGGCCTTTCAAGCCCGAGGCGTACCGTTACTAAACTGCTCTTGCGCA TTGCAGGGACTCGGGGAGGGAGGAGAGAGTGGTTCACGCAGCCTCTCAGA AGCCCTGGGGGAGGCTAACTTGTGCCCTCGTTCTTGTTGGCGCTAATGTT GCTGGTGCTGGAAATTTTGGGTTGTGCGTATGAAGGTCCTGGAATGCTCC AGGTTTTGCGTAGGGGGGAAAGAATTAGATGAAGGGTTTTTTGCTCTGTT TTAATGTTAGGTAGGTGGGTGGGTCGGTGAAGAGAAGAGAGAAAGAAGAG GAGAGGGCGTCCATCATCACCAGCACCGGCAAAAGAAAAGAACAATCTCT AAAGCGTTTTCTCGCAGTAGATATATTATGACCTTTATTGTGATCCCGTC ACTTTTCGTTGCAGGAAAGGTTGGTAACTTCAGGAGAATGAATATAATTG CTGCCTCTAGTAGAATTACCGTGCTCCATGCGCACAAGTCCTTGCTTCCG GGACGACTTTATCCCACCGTACACCCTGCCCGTCGTAGGGCTAGATATGT TATTGGGGGCGAAAGATGTGCGGTGCGGGCACACGTACGTGCCTTGCCTT TTTCGGCTGCGTAGCTTGGGCGTTGGCGATGCTGTGGTTGCCGTGCAAAG CCTCCTGTAACGTCTCACTTAACTCACGCACCCTCACCACAATCTTTTCT CACACATCCATGGATGCATAGGATTAAGCCTCTTCAGGCCCTCCACTAAA AAAAAAGCGTCCGAGGGATTTAATTGATTGATTGACGGAGGAGCACACTC AAACCTCCCCACCCTGTTGCCCTGGCCGGCCACCTCTCTGCCCACCACGC TCACAGCCCACCCCTCACACCAATCTAAGCAATGCGCGTGAACCGGGCCA AGCAAGTACGAAAATGGTTGCGATTCTACCGCATCGTCTACGGCGTGGCG CCTCCCTATATGGTACGTTTTGTGTGTGCGTTGCTCCTTGCACAGAGGAG AAACTCGTTTGATATGGAAGCGACTCCCGTTTTTTAAAAATACAGACCCA ATGGCATATGCACTTGCGGCCCTGGGCTCTTCCGTGACATCACGTTACGG TCATACCTACAGTACTGCTGCCTCTTTCTCTCCCACCAAGCTTTCACTCT CACTCGACCCTCCCCGCCCTCCGTCACTCAACCCTCCCCGCCCTCCAGAT ACTCATAGACGGCAACTTCATTTACATGGCTCTCAAAGTCAAAATTGACA TCAAAGACCGCCTCAAGAAAATGCTGCTTGGTGAGAGCTTCGTCTGTTGC ATCCCTAAAGCAGTCTTAGACGAGCTAGCTGCCTTAGGCCCTGCCTTCCA CCCTGCCCTTGAGTGGGCACGCACCTGTTGCGAGGTCCTCTGCAACCCCC CTCCCGTACAAAACGACGATGACGTGGACCATGACAACGAGAAGCAACGA GACACAATGAGCGCTGGAGAGGCCATCCGCACCTTGATTGGCGAAGAGAA CAAAGACAAATACATGGTGGCCACCCAAGACCAAGACCTAAGATCCCAGC TTCGTCACGTCCCCTCCGTCGGGCTGCTCTTCGTCTCCCGCGCCGTCTTA TTAATGGAAGCCCCCTCTAACGCCTCAAAGGCTGTGTCGGCCAAGCAAGA GGGGGAGAAGTTCCGACTTTTAAGCGAGGAGGAACGCTTGCTCTTGGCTA ACATCAGAATGAAGGACAAGGATGCCGCCTCTGGTGAAAGGACGGTTGGA AGTGGGGAGCAGCAGCAGCAGCAGCAGCAGGAGGCGGGGATGGGTAGGAA GACTCGCGCAAAAAAGAAACCGAAAGGACCCAATCCGCTGTCAGTAAAAA AGTCTGACAAGAGCGAGATGAAGAAGAAGACGACGTCTACAACTACGCCT ATTAAGAGTGGGGGGGCAAAAAAGGAGATGAGCGGTGGTTGTGGTAATGG AGGACGCGGAAGAGAAGGAGGAGGAGTAGGAGGAGGAGAGTCAGGAGGAG GGAGTGGCAAGAAACGCAAGCGCAAAAAGAGGAATGGCGCTCCTGCCATC GGTGGAGGAGGGAAGGTTTGAAAACAATGAGACGGCACAGGAGGAGAATG AAGAGAAGGCAGGCACTATAACACAGTTTATACACAGGACTCTGTAAAAT CGAAACGGAAGCAGACAGCTGCTGGGTAACATTGGCATCATACACATCAA GTGAAACAGCCATTGCATTCGAAAATAAGTTAAGACGGTTCAAAAAAGCT TGGGGCTGCTGTTTTGTGCTTGACGAGAGGCAGACGACAGGAGCAACATC GCAGACAGGAGGCAGGGACAGATTGAGGCCTTCAGGAATGCGCCGCTTCA TCTCTGCTCTGTCTCCCCCTTCCCTCCCCCCCAACAGGGACTCCATGTAT ATCGTTGCCGTGTAAAGGCCCATTTAAGTGAAGGGCGGAAAGGAAGATGG CCGAGGAGGACGACAGCAAAGAGTACCAGTCCCAAGAGCCCTCCAGCGGC AGTATCAGCGGCAGTCATAGCAACAAGAATAATAGCAAGTGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAG
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Coding sequence (CDS) from alignment at scaffold_19:165771..169794+

>mRNA_7301 ID=mRNA_7301|Name=jgi.p|Nanoce1779_2|598165|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_19:165771..169794+ (Nannochloropsis oceanica)
ATGTCTATGGGAGACTATCGCGTGGCGGACATTTCGCTTGCTGACTTCGG
CCGCAAGGAGATCCAGCTTGCCGAGGTTGAAATGCCTGGTCTGATGGCTT
GCCGGGAGGAATTCGGTACGGAGGCCCTCAAGGGTGCCCGCATTGCCGGC
TCTTTGCATATGACCATCCAGACGGCCGTACTCATCGAGACGCTCAAGGC
TATGGGCGGGGACATCCGATGGTGCTCTTGCAACATCTTCTCTACCCAGG
ACCACGCCGCGGCCGCCATTGCCCGGGATGAGTCCGCTGCTGTCTTTGCC
TGGAAGGGCGAGAGCCTTGAGGAGTATTGGGAGTGCACCATGAACGCCAT
TACGTGGCCTTCGGACGACGGTAAGGGCGACGGACCTGACCTGATCGTCG
ATGACGGCGGGGACATGACTTTGCTCGTCCACGAGGGGTACAAGGCCGAG
GAGCTGTACGCCAAGGACGGGACCTTGCCCGACCCTGAGTCCACGGACAA
TGCGGAGTTTAAGATCGTCCTGACCATCATTGCGCGTGAGCTGCCCAAGT
CCCCCCAAAAGTGGCACAAGGTCGCTGCGCGCATGTTCGGTGTGTCGGAG
GAGACGACCACGGGTGTGCACCGCCTCTACCTGATGGAGAAGAACAAGAC
CCTACTCTTCCCTGCCATCAACGTCAACGACTCGGTGACCAAGTCCAAAT
TTGACAACTTGTATGGGTGCAAACACTCTCTCCCCGATGGCCTCATGCGC
GCCACGGACGTTATGCTTGCCGGGAAGCGCGCCGTAATCTGCGGGTATGG
AGATGTGGGGAAGGGCTGCGCGCAGGCCATGAAGGCTGCGGGCTCCATCG
TATATGTCACAGAGGTGGATCCTATCTGCGCGTTGCAGGCTGCCATGGAG
GGCTTCCGTGTCGTGCGCATGAGCTCGGTGATCGGCGAGGCGGATATCAT
TATCACCACGACGGGGAATAAGGGGATCATCATGGCGGAGGACATGGCCA
AGATGAAGAACAACGCCATCATTGGTAACATTGGCCACTTCGACAACGAG
CTTGACATGGACGGTGTGATGAAGATCGCCAAGCGCGAGAACATCAAGCC
CCAAGTCGACCGTTTCGTCTTCCCGGACGGGCATGGTGTCATTATCCTTG
CTGAGGGCCGTCTCCTCAACTTGGGATGCGCAACTGGCCATCCCTCCTTT
GTCATGTCTGCCTCCTTTACGAACCAGACCCTTGCTCAGCTCGAGCTTTG
GAAGGAGCGCAGCTCGGGGAAGTACGCCCGCGGGAAGGTGTATGTGCTGC
CCAAGGTGTTGGACGAGAAGGTGGCGCGCTTGCACCTGAGCGCCCTGGGG
GTGGAGCTGACGGAGCTCTCCTCGGAGCAGGCGGAGTATATTGGGGTGAA
TGTCGCGGGGCCTTTCAAGCCCGAGGCGTACCGTTACTAA
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Synonyms
Publications