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Properties
| Property Name | Value |
|---|
| TranscriptId | 558512 |
| Track | FilteredModels2 |
| ProteinId | 558426 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:160293..162420 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7299 ID=mRNA_7299|Name=jgi.p|Nanoce1779_2|558426|organism=Nannochloropsis oceanica|type=mRNA|length=1851bp
AAATTAATTTTTATATAAAAATTATTCTGGAATAACCTCCCCTCTGTGGC
TTGTGCGTGTGTGCCTCGATCATTTGCTTGCTTTGATGTGTATGTCAGCC
TGCACTATACATACGATGATGTTGGCCCGAAAGGCATTTCTCCTTTTTAA
CGACGAAGCTGCTCTCCAACTAACAAAAATCACATGTGACGCGAAAATGC
TGCGTGTTATCGTGCTCACAGACCTGTGTGAGAGGAGGAAAGTCGTGCAC
GATAACTTGCACTTGTTCTTCCGCAGCATATAAGCTCGCGTCTGGCTTAG
CCAACTACCGCTTCCACCGCACCACTCACACACACACGCCAGTCTTGAAT
CAACCCAAGCCATCTCATGTCCAGTCCGCACGAAGGAAAGCCGATCGAGT
GTAAAGCGGCCGTGGCATGGGAACCGAACAAGCCATTGGTTACCGAGACT
ATCCGCGTGGACCCACCCAAGGCAGGGGAAGTCCGGCTAAAGGTCATTGC
CAATGCCTTGTGCCATACCGACGTTTACACCTTGTCCGGGCAAGACCCCG
AGGGTCTCTTCCCCTGCATCCTAGGCCACGAAGCAGGGGCTATTGTCGAG
AGCATTGGGGAGGGCGTGACGTCCGTTAAGCCCGGCATGTACGTCATTCC
GTGCTACACTCCGCAATGCCAAGAAGCCGGTTGCATCTACTGCCAATCCC
CCAAGACGAATCTCTGCCCTAAGATCAGGGGGACGCAGGGAAAAGGAGTC
ATGCCTGATGGGACTTCACGGTTCAGTACCATGGATGGGAGGCACATCTA
CCACTTTATGGGCTGTTCGACCTTCGCAGAATATACAGTAGTGGCCGAGA
TCTCCTGTGCGGTGGTCTCGGACAAGGCGCCGTTGGACAAGGTGTGCTTG
TTTGGGTGCGGAGTGAGCACAGGGCTAGGGGCGGTGCTCAAGACTTGCGC
AGTGGAGGAGGGGGCGACGGTGGCGGTATTCGGCTTGGGGGCAGTGGGGC
TGGCTGTCGTACAGGCGGCCAAGATGAGGAAAGCGAGGCGGATCATTGCG
ATAGATATGAACGAGAAGAAGTTCGAGATGGCGCGGCAGTTGGGGGCAAC
GGATTGTTTGAATCCTTCTACATTTGGTGAGAAGCCGATTCAGACGGTGG
TGGTGGAGATGACCACGTGGGGAGTGGACTACTCGTTTGACGCCACAGGA
AACACGGAGGTGATGCGGGCGGCTTTGGAGTGCGCGCATCGCGGGTGGGG
GGTGAGTTGTGTGATCGGCGTGGCGGCGAGTGGGAAGGTTATTCAGACAA
GACCTTTTCAGCTGATCACAGGGAGGACGTGGAAGGGGACAGCGTTTGGG
GGATGGAAGAGTCGAGTGGATGTGCCGATGCTGGTGCAGCAGTACCTGGG
GGGGGAGTTACCCATTGACCACTACGTGACACATGAGTATGACGGGGTGG
ACAAGATCAATGACGCGATTCACGCCTTGCATGAGGGAAACTGTTTGCGA
GCGGTGGTGGCGTATGCCACGCCTTGAGAGTAGAGAGTAGGTTCGAATAG
GCTGAAAGGTTTAGGGTTGCAGCAGTCAGATCAGTTGACAATATAGTAGT
CGGCTGCGAAAGAGCGGAAAAGGAAAGAATGATCTTCACAAGAGGATAAA
TACGAATTAGAGACAACCTCCCCCAACTTCTCATAGCGAGAGGAGCGAGA
GGAGAAAGCGCCTTCGCACTTGTGCTGGCACACCGAGAGAGGCGGTGATC
ATACAAGAGGAAGAAAACAATAGTCTGAACTATCGAGCTGGTATTGGTAA
TGGTATGTACGTCTATGCTATTGCTGACTACCACACTCCCAAAATACCAC
C back to topprotein sequence of jgi.p|Nanoce1779_2|558426 >mRNA_7299-protein ID=mRNA_7299-protein|Name=jgi.p|Nanoce1779_2|558426|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MSSPHEGKPIECKAAVAWEPNKPLVTETIRVDPPKAGEVRLKVIANALCH
TDVYTLSGQDPEGLFPCILGHEAGAIVESIGEGVTSVKPGMYVIPCYTPQ
CQEAGCIYCQSPKTNLCPKIRGTQGKGVMPDGTSRFSTMDGRHIYHFMGC
STFAEYTVVAEISCAVVSDKAPLDKVCLFGCGVSTGLGAVLKTCAVEEGA
TVAVFGLGAVGLAVVQAAKMRKARRIIAIDMNEKKFEMARQLGATDCLNP
STFGEKPIQTVVVEMTTWGVDYSFDATGNTEVMRAALECAHRGWGVSCVI
GVAASGKVIQTRPFQLITGRTWKGTAFGGWKSRVDVPMLVQQYLGGELPI
DHYVTHEYDGVDKINDAIHALHEGNCLRAVVAYATP* back to topmRNA from alignment at scaffold_19:160293..162420+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7299 ID=mRNA_7299|Name=jgi.p|Nanoce1779_2|558426|organism=Nannochloropsis oceanica|type=mRNA|length=2128bp|location=Sequence derived from alignment at scaffold_19:160293..162420+ (Nannochloropsis oceanica)
AAATTAATTTTTATATAAAAATTATTCTGGAATAACCTCCCCTCTGTGGC
TTGTGCGTGTGTGCCTCGATCATTTGCTTGCTTTGATGTGTATGTCAGCC
TGCACTATACATACGATGATGTTGGCCCGAAAGGCATTTCTCCTTTTTAA
CGACGAAGCTGCTCTCCAACTAACAAAAATCACATGTGACGCGAAAATGC
TGCGTGTTATCGTGCTCACAGACCTGTGTGAGAGGAGGAAAGTCGTGCAC
GATAACTTGCACTTGTTCTTCCGCAGCATATAAGCTCGCGTCTGGCTTAG
CCAACTACCGCTTCCACCGCACCACTCACACACACACGCCAGTCTTGAAT
CAACCCAAGCCATCTCATGTCCAGTCCGCACGAAGGAAAGCCGATCGAGT
GTAAAGCGGTGCGTTCCCATTCTCCTCCCTCCCATCGTATTCTATAGTTC
CACGCATCACGCCTCACGATTCAAGCTGCACACTTACACACCTTGCAGGC
CGTGGCATGGGAACCGAACAAGCCATTGGTTACCGAGACTATCCGCGTGG
ACCCACCCAAGGCAGGGGAAGTCCGGCTAAAGGTCATTGCCAATGCCTTG
TGCCATACCGACGGTGCGTCCACAAGACACGCAAGAAAAGGAGAGGGATG
GGGAAAGCTTGTGTTAAAGAGAGACCTGATGTCATGGATGCTTGTTATCT
GACGCTGTGATGCTTGACCAAGCGGATCCAGCCCTCCACCCTCGTTCACG
CTCCCTCTTCCATCCCCTCCCTATGCCCGTGCCCACCACAAACCTCACAG
TTTACACCTTGTCCGGGCAAGACCCCGAGGGTCTCTTCCCCTGCATCCTA
GGCCACGAAGCAGGGGCTATTGTCGAGAGCATTGGGGAGGGCGTGACGTC
CGTTAAGCCCGGCATGTACGTCATTCCGTGCTACACTCCGCAATGCCAAG
AAGCCGGTTGCATCTACTGCCAATCCCCCAAGACGAATCTCTGCCCTAAG
ATCAGGGGGACGCAGGGAAAAGGAGTCATGCCTGATGGGACTTCACGGTT
CAGTACCATGGATGGGAGGCACATCTACCACTTTATGGGCTGTTCGACCT
TCGCAGAATATACAGTAGTGGCCGAGATCTCCTGTGCGGTGGTCTCGGAC
AAGGCGCCGTTGGACAAGGTGTGCTTGTTTGGGTGCGGAGTGAGCACAGG
GCTAGGGGCGGTGCTCAAGACTTGCGCAGTGGAGGAGGGGGCGACGGTGG
CGGTATTCGGCTTGGGGGCAGTGGGGCTGGCTGTCGTACAGGCGGCCAAG
ATGAGGAAAGCGAGGCGGATCATTGCGATAGATATGAACGAGAAGAAGTT
CGAGATGGCGCGGCAGTTGGGGGCAACGGATTGTTTGAATCCTTCTACAT
TTGGTGAGAAGCCGATTCAGACGGTGGTGGTGGAGATGACCACGTGGGGA
GTGGACTACTCGTTTGACGCCACAGGAAACACGGAGGTGATGCGGGCGGC
TTTGGAGTGCGCGCATCGCGGGTGGGGGGTGAGTTGTGTGATCGGCGTGG
CGGCGAGTGGGAAGGTTATTCAGACAAGACCTTTTCAGCTGATCACAGGG
AGGACGTGGAAGGGGACAGCGTTTGGGGGATGGAAGAGTCGAGTGGATGT
GCCGATGCTGGTGCAGCAGTACCTGGGGGGGGAGTTACCCATTGACCACT
ACGTGACACATGAGTATGACGGGGTGGACAAGATCAATGACGCGATTCAC
GCCTTGCATGAGGGAAACTGTTTGCGAGCGGTGGTGGCGTATGCCACGCC
TTGAGAGTAGAGAGTAGGTTCGAATAGGCTGAAAGGTTTAGGGTTGCAGC
AGTCAGATCAGTTGACAATATAGTAGTCGGCTGCGAAAGAGCGGAAAAGG
AAAGAATGATCTTCACAAGAGGATAAATACGAATTAGAGACAACCTCCCC
CAACTTCTCATAGCGAGAGGAGCGAGAGGAGAAAGCGCCTTCGCACTTGT
GCTGGCACACCGAGAGAGGCGGTGATCATACAAGAGGAAGAAAACAATAG
TCTGAACTATCGAGCTGGTATTGGTAATGGTATGTACGTCTATGCTATTG
CTGACTACCACACTCCCAAAATACCACC back to topCoding sequence (CDS) from alignment at scaffold_19:160293..162420+ >mRNA_7299 ID=mRNA_7299|Name=jgi.p|Nanoce1779_2|558426|organism=Nannochloropsis oceanica|type=CDS|length=3483bp|location=Sequence derived from alignment at scaffold_19:160293..162420+ (Nannochloropsis oceanica)
ATGTCCAGTCCGCACGAAGGAAAGCCGATCGAGTGTAAAGCGGCCGTGGC
ATGGGAACCGAACAAGCCATTGGTTACCGAGACTATCCGCGTGGACCCAC
CCAAGGCAGGGGAAGTCCGGCTAAAGGTCATTGCCAATGCCTTGTGCCAT
ACCGACGTTTACACCTTGTCCGGGCAAGACCCCGAGGGTCTCTTCCCCTG
CATCCTAGGCCACGAAGCAGGGGCTATTGTCGAGAGCATTGGGGAGGGCG
TGACGTCCGTTAAGCCCGGCATGTACGTCATTCCGTGCTACACTCCGCAA
TGCCAAGAAGCCGGTTGCATCTACTGCCAATCCCCCAAGACGAATCTCTG
CCCTAAGATCAGGGGGACGCAGGGAAAAGGAGTCATGCCTGATGGGACTT
CACGGTTCAGTACCATGGATGGGAGGCACATCTACCACTTTATGGGCTGT
TCGACCTTCGCAGAATATACAGTAGTGGCCGAGATCTCCTGTGCGGTGGT
CTCGGACAAGGCGCCGTTGGACAAGGTGTGCTTGTTTGGGTGCGGAGTGA
GCACAGGGCTAGGGGCGGTGCTCAAGACTTGCGCAGTGGAGGAGGGGGCG
ACGGTGGCGGTATTCGGCTTGGGGGCAGTGGGGCTGGCTGTCGTACAGGC
GGCCAAGATGAGGAAAGCGAGGCGGATCATTGCGATAGATATGAACGAGA
AGAAGTTCGAGATGGCGCGGCAGTTGGGGGCAACGGATTGTTTGAATCCT
TCTACATTTGGTGAGAAGCCGATTCAGACGGTGGTGGTGGAGATGACCAC
GTGGGGAGTGGACTACTCGTTTGACGCCACAGGAAACACGGAGGTGATGC
GGGCGGCTTTGGAGTGCGCGCATCGCGGGTGGGGGGTGAGTTGTGTGATC
GGCGTGGCGGCGAGTGGGAAGGTTATTCAGACAAGACCTTTTCAGCTGAT
CACAGGGAGGACGTGGAAGGGGACAGCGTTTGGGGGATGGAAGAGTCGAG
TGGATGTGCCGATGCTGGTGCAGCAGTACCTGGGGGGGGAGTTACCCATT
GACCACTACGTGACACATGAGTATGACGGGGTGGACAAGATCAATGACGC
GATTCACGCCTTGCATGAGGGAAACTGTTTGCGAGCGGTGGTGGCGTATG
CCACGCCTTGAATGTCCAGTCCGCACGAAGGAAAGCCGATCGAGTGTAAA
GCGGCCGTGGCATGGGAACCGAACAAGCCATTGGTTACCGAGACTATCCG
CGTGGACCCACCCAAGGCAGGGGAAGTCCGGCTAAAGGTCATTGCCAATG
CCTTGTGCCATACCGACGTTTACACCTTGTCCGGGCAAGACCCCGAGGGT
CTCTTCCCCTGCATCCTAGGCCACGAAGCAGGGGCTATTGTCGAGAGCAT
TGGGGAGGGCGTGACGTCCGTTAAGCCCGGCATGTACGTCATTCCGTGCT
ACACTCCGCAATGCCAAGAAGCCGGTTGCATCTACTGCCAATCCCCCAAG
ACGAATCTCTGCCCTAAGATCAGGGGGACGCAGGGAAAAGGAGTCATGCC
TGATGGGACTTCACGGTTCAGTACCATGGATGGGAGGCACATCTACCACT
TTATGGGCTGTTCGACCTTCGCAGAATATACAGTAGTGGCCGAGATCTCC
TGTGCGGTGGTCTCGGACAAGGCGCCGTTGGACAAGGTGTGCTTGTTTGG
GTGCGGAGTGAGCACAGGGCTAGGGGCGGTGCTCAAGACTTGCGCAGTGG
AGGAGGGGGCGACGGTGGCGGTATTCGGCTTGGGGGCAGTGGGGCTGGCT
GTCGTACAGGCGGCCAAGATGAGGAAAGCGAGGCGGATCATTGCGATAGA
TATGAACGAGAAGAAGTTCGAGATGGCGCGGCAGTTGGGGGCAACGGATT
GTTTGAATCCTTCTACATTTGGTGAGAAGCCGATTCAGACGGTGGTGGTG
GAGATGACCACGTGGGGAGTGGACTACTCGTTTGACGCCACAGGAAACAC
GGAGGTGATGCGGGCGGCTTTGGAGTGCGCGCATCGCGGGTGGGGGGTGA
GTTGTGTGATCGGCGTGGCGGCGAGTGGGAAGGTTATTCAGACAAGACCT
TTTCAGCTGATCACAGGGAGGACGTGGAAGGGGACAGCGTTTGGGGGATG
GAAGAGTCGAGTGGATGTGCCGATGCTGGTGCAGCAGTACCTGGGGGGGG
AGTTACCCATTGACCACTACGTGACACATGAGTATGACGGGGTGGACAAG
ATCAATGACGCGATTCACGCCTTGCATGAGGGAAACTGTTTGCGAGCGGT
GGTGGCGTATGCCACGCCTTGAATGTCCAGTCCGCACGAAGGAAAGCCGA
TCGAGTGTAAAGCGGCCGTGGCATGGGAACCGAACAAGCCATTGGTTACC
GAGACTATCCGCGTGGACCCACCCAAGGCAGGGGAAGTCCGGCTAAAGGT
CATTGCCAATGCCTTGTGCCATACCGACGTTTACACCTTGTCCGGGCAAG
ACCCCGAGGGTCTCTTCCCCTGCATCCTAGGCCACGAAGCAGGGGCTATT
GTCGAGAGCATTGGGGAGGGCGTGACGTCCGTTAAGCCCGGCATGTACGT
CATTCCGTGCTACACTCCGCAATGCCAAGAAGCCGGTTGCATCTACTGCC
AATCCCCCAAGACGAATCTCTGCCCTAAGATCAGGGGGACGCAGGGAAAA
GGAGTCATGCCTGATGGGACTTCACGGTTCAGTACCATGGATGGGAGGCA
CATCTACCACTTTATGGGCTGTTCGACCTTCGCAGAATATACAGTAGTGG
CCGAGATCTCCTGTGCGGTGGTCTCGGACAAGGCGCCGTTGGACAAGGTG
TGCTTGTTTGGGTGCGGAGTGAGCACAGGGCTAGGGGCGGTGCTCAAGAC
TTGCGCAGTGGAGGAGGGGGCGACGGTGGCGGTATTCGGCTTGGGGGCAG
TGGGGCTGGCTGTCGTACAGGCGGCCAAGATGAGGAAAGCGAGGCGGATC
ATTGCGATAGATATGAACGAGAAGAAGTTCGAGATGGCGCGGCAGTTGGG
GGCAACGGATTGTTTGAATCCTTCTACATTTGGTGAGAAGCCGATTCAGA
CGGTGGTGGTGGAGATGACCACGTGGGGAGTGGACTACTCGTTTGACGCC
ACAGGAAACACGGAGGTGATGCGGGCGGCTTTGGAGTGCGCGCATCGCGG
GTGGGGGGTGAGTTGTGTGATCGGCGTGGCGGCGAGTGGGAAGGTTATTC
AGACAAGACCTTTTCAGCTGATCACAGGGAGGACGTGGAAGGGGACAGCG
TTTGGGGGATGGAAGAGTCGAGTGGATGTGCCGATGCTGGTGCAGCAGTA
CCTGGGGGGGGAGTTACCCATTGACCACTACGTGACACATGAGTATGACG
GGGTGGACAAGATCAATGACGCGATTCACGCCTTGCATGAGGGAAACTGT
TTGCGAGCGGTGGTGGCGTATGCCACGCCTTGA back to top
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