jgi.p|Nanoce1779_2|632169, mRNA_7298 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632169
Unique NamemRNA_7298
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length671
Alignment locationscaffold_19:159493..160299 +

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Properties
Property NameValue
TranscriptId632255
TrackFilteredModels2
ProteinId632169
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:159493..160299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632169gene_7298Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632169mRNA_7298-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7298CDS_7298Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7298 ID=mRNA_7298|Name=jgi.p|Nanoce1779_2|632169|organism=Nannochloropsis oceanica|type=mRNA|length=671bp
AGCAGCAGCAGCAGCAGCAGCAAAGCGGCAGCAAATTCCAGCGAAAAGAG
AAAGAGGAAGACGATCCATTTGTGCGCATATACGACCTGTTGTGCTGCGC
GGTCAAAGGAGGGGTGGTCCCCGCCATCCATAATTTGGGGAACTTGCTTG
CCGAGGGACGGAGTCCGCGCGTGCCTCGTGATGACGAGGTGGCCTTGGAG
CTTTACAGCGCAGGCGTCGAGCTAGGCGATCCTATGTCTACCTACACCTT
GGCCACCTGGCTCTGCCAAGGTCGTGGCGGTGAAGAAGACTGGGACCGAG
GTTTCGAACTCCACCGACAAGCAGCGGGGATGGGCATGCCCCAGGCGATG
TACAACACGGCCACTCATTTTTTTGCGGGACGAGGTGTAGTGCAGGATAT
GGTGCAGGCGGCCCACTGGTTTCAACAAGCAGCTGAAGCAGGCTTTTCCA
AAGCGATGATTAATCTGGGAAACATGCATTTGGAGGGCTTGGCACCCGCG
CCACCGGTGGGTGTGGCCCCTGTGGACGAAGCGCGACGATGGTTTGAGAG
GGCGGCGATGGCCGGCGACTCAGCAGCTGCTGAGGGACTGGCCAAGTGCG
ACGCGGCCTTGGCTACTGCTACTGAGAAAGAAAAGGCGGAGGAGGGAGAA
AAAGGAAAAACGATAAATTAA
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protein sequence of jgi.p|Nanoce1779_2|632169

>mRNA_7298-protein ID=mRNA_7298-protein|Name=jgi.p|Nanoce1779_2|632169|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MSTYTLATWLCQGRGGEEDWDRGFELHRQAAGMGMPQAMYNTATHFFAGR
GVVQDMVQAAHWFQQAAEAGFSKAMINLGNMHLEGLAPAPPVGVAPVDEA
RRWFERAAMAGDSAAAEGLAKCDAALATATEKEKAEEGEKGKTIN*
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mRNA from alignment at scaffold_19:159493..160299+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7298 ID=mRNA_7298|Name=jgi.p|Nanoce1779_2|632169|organism=Nannochloropsis oceanica|type=mRNA|length=807bp|location=Sequence derived from alignment at scaffold_19:159493..160299+ (Nannochloropsis oceanica)
AGCAGCAGCAGCAGCAGCAGCAAAGCGGCAGCAAATTCCAGCGAAAAGAG
AAAGAGGAAGACGATCCATTTGTGCGCATATACGACCTGTTGTGCTGCGC
GGTCAAAGGAGGGGTGGTCCCCGCCATCCATAATTTGGGGAACTTGCTTG
CCGAGGGACGGAGTCCGCGCGTGCCTCGTGATGACGAGGTGGCCTTGGAG
CTTTACAGCGCAGGTTTGTGACAAGAGTAAAGAAAACTCAAGAGAGGAAC
GATTGGGTGCTTGATAAATAGAACATGTACACGTACCCAATACACTTCGA
TCCCCCCTTTCTCTCTCTCTTGGTGCACGACATGAACACGAACAAACAGG
CGTCGAGCTAGGCGATCCTATGTCTACCTACACCTTGGCCACCTGGCTCT
GCCAAGGTCGTGGCGGTGAAGAAGACTGGGACCGAGGTTTCGAACTCCAC
CGACAAGCAGCGGGGATGGGCATGCCCCAGGCGATGTACAACACGGCCAC
TCATTTTTTTGCGGGACGAGGTGTAGTGCAGGATATGGTGCAGGCGGCCC
ACTGGTTTCAACAAGCAGCTGAAGCAGGCTTTTCCAAAGCGATGATTAAT
CTGGGAAACATGCATTTGGAGGGCTTGGCACCCGCGCCACCGGTGGGTGT
GGCCCCTGTGGACGAAGCGCGACGATGGTTTGAGAGGGCGGCGATGGCCG
GCGACTCAGCAGCTGCTGAGGGACTGGCCAAGTGCGACGCGGCCTTGGCT
ACTGCTACTGAGAAAGAAAAGGCGGAGGAGGGAGAAAAAGGAAAAACGAT
AAATTAA
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Coding sequence (CDS) from alignment at scaffold_19:159493..160299+

>mRNA_7298 ID=mRNA_7298|Name=jgi.p|Nanoce1779_2|632169|organism=Nannochloropsis oceanica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_19:159493..160299+ (Nannochloropsis oceanica)
ATGTCTACCTACACCTTGGCCACCTGGCTCTGCCAAGGTCGTGGCGGTGA
AGAAGACTGGGACCGAGGTTTCGAACTCCACCGACAAGCAGCGGGGATGG
GCATGCCCCAGGCGATGTACAACACGGCCACTCATTTTTTTGCGGGACGA
GGTGTAGTGCAGGATATGGTGCAGGCGGCCCACTGGTTTCAACAAGCAGC
TGAAGCAGGCTTTTCCAAAGCGATGATTAATCTGGGAAACATGCATTTGG
AGGGCTTGGCACCCGCGCCACCGGTGGGTGTGGCCCCTGTGGACGAAGCG
CGACGATGGTTTGAGAGGGCGGCGATGGCCGGCGACTCAGCAGCTGCTGA
GGGACTGGCCAAGTGCGACGCGGCCTTGGCTACTGCTACTGAGAAAGAAA
AGGCGGAGGAGGGAGAAAAAGGAAAAACGATAAATTAA
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Synonyms
Publications