jgi.p|Nanoce1779_2|567780, mRNA_7297 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567780
Unique NamemRNA_7297
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length630
Alignment locationscaffold_19:158769..159713 +

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Properties
Property NameValue
TranscriptId567866
TrackFilteredModels2
ProteinId567780
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:158769..159713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567780gene_7297Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567780mRNA_7297-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7297CDS_7297Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7297 ID=mRNA_7297|Name=jgi.p|Nanoce1779_2|567780|organism=Nannochloropsis oceanica|type=mRNA|length=630bp
ATGTGCGGCGGAAAGAGGCTCTCCTCGCCACTATGCTTGCCCGGACCATT
CCTGACCCCGCTCTTCCTCTCTTGCTATAGGGCGACTACCTATCCCGCTT
TCCTCCCGCACGGCTTCACCACCATCACCCCCTCCAAAGAAGAGCACCAT
CGGGTCAAGTATCAAGAGGTCCTGACCAGTCTAGGCGGTAACCTGACTCA
AGCTGCTGCCCAGTCATTGACTGGTGCCGAGGATATGTTCAGCAGGAGCA
GGAGCAGCATGAGCAGCAGAGGCACTGGTGCCCCTCCTCTAGCGCCTGCG
AAGGTCTTGATGGCCGCCAAGCAGAGTACTGAAGAGCTTCTCGCAGAAGC
AGACCCACCTTTGCCACCCGAAGCATTGTTGTTTCTAGGAGATTTGTTTT
GGTCGGGCTTGCAGGCGCAGGGGATGTTTATTCCCCAGGACCAGGAAAAG
GCAGCCGCGCTCTGGCGGGCTGCGGGATTGAGAGGGGACGAGGAGGGGAC
ATATAACTATGCCAACTGCTTGCTCTTTGGGAGTGGGACCGCAGAGAATC
GATCACAAGCGCAGGGACGGAGTCCGCGCGTGCCTCGTGATGACGAGGTG
GCCTTGGAGCTTTACAGCGCAGGTTTGTGA
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protein sequence of jgi.p|Nanoce1779_2|567780

>mRNA_7297-protein ID=mRNA_7297-protein|Name=jgi.p|Nanoce1779_2|567780|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MCGGKRLSSPLCLPGPFLTPLFLSCYRATTYPAFLPHGFTTITPSKEEHH
RVKYQEVLTSLGGNLTQAAAQSLTGAEDMFSRSRSSMSSRGTGAPPLAPA
KVLMAAKQSTEELLAEADPPLPPEALLFLGDLFWSGLQAQGMFIPQDQEK
AAALWRAAGLRGDEEGTYNYANCLLFGSGTAENRSQAQGRSPRVPRDDEV
ALELYSAGL*
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mRNA from alignment at scaffold_19:158769..159713+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7297 ID=mRNA_7297|Name=jgi.p|Nanoce1779_2|567780|organism=Nannochloropsis oceanica|type=mRNA|length=945bp|location=Sequence derived from alignment at scaffold_19:158769..159713+ (Nannochloropsis oceanica)
ATGTGCGGCGGAAAGAGGCTCTCCTCGCCACTATGCTTGCCCGGACCATT
CCTGACCCCGCTCTTCCTCTCTTGCTATAGGGCGACTACCTATCCCGCTT
TCCTCCCGCACGGCTTCACCACCATCACCCCCTCCAAAGAAGAGCACCAT
CGGGTCAAGTATCAAGAGGTCCTGACCAGTCTAGGCGGTAACCTGACTCA
AGCTGCTGCCCAGTCATTGACTGGTGCCGAGGATATGTTCAGCAGGAGCA
GGAGCAGCATGAGCAGCAGAGGCACTGGTGCCCCTCCTCTAGCGCCTGCG
AAGGTCTTGATGGCCGCCAAGCAGAGTACTGAAGAGCTTCTCGCAGAAGC
AGACCCACCTTTGCCACCCGAAGCATTGTTGTTTCTAGGAGATTTGTTTT
GGTCGGGCTTGCAGGCGCAGGGGATGTTTATTCCCCAGGACCAGGAAAAG
GCAGCCGCGCTCTGGCGGGCTGCGGGATTGAGAGGGGACGAGGAGGGGAC
ATATAACTATGCCAACTGCTTGCTCTTTGGGAGTGGGACCGCAGAGAATC
GATCACAAGCGCAGGTACTATTGAATAAACTCGCCGAAAAAGGCCATGCT
CAGGCCAGCTACAGCTTGGCTGTCTTGCTGACGGCGGCGCAGCAAACGCA
ACAACACCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGC
GGCAGCAAATTCCAGCGAAAAGAGAAAGAGGAAGACGATCCATTTGTGCG
CATATACGACCTGTTGTGCTGCGCGGTCAAAGGAGGGGTGGTCCCCGCCA
TCCATAATTTGGGGAACTTGCTTGCCGAGGGACGGAGTCCGCGCGTGCCT
CGTGATGACGAGGTGGCCTTGGAGCTTTACAGCGCAGGTTTGTGA
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Coding sequence (CDS) from alignment at scaffold_19:158769..159713+

>mRNA_7297 ID=mRNA_7297|Name=jgi.p|Nanoce1779_2|567780|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_19:158769..159713+ (Nannochloropsis oceanica)
ATGTGCGGCGGAAAGAGGCTCTCCTCGCCACTATGCTTGCCCGGACCATT
CCTGACCCCGCTCTTCCTCTCTTGCTATAGGGCGACTACCTATCCCGCTT
TCCTCCCGCACGGCTTCACCACCATCACCCCCTCCAAAGAAGAGCACCAT
CGGGTCAAGTATCAAGAGGTCCTGACCAGTCTAGGCGGTAACCTGACTCA
AGCTGCTGCCCAGTCATTGACTGGTGCCGAGGATATGTTCAGCAGGAGCA
GGAGCAGCATGAGCAGCAGAGGCACTGGTGCCCCTCCTCTAGCGCCTGCG
AAGGTCTTGATGGCCGCCAAGCAGAGTACTGAAGAGCTTCTCGCAGAAGC
AGACCCACCTTTGCCACCCGAAGCATTGTTGTTTCTAGGAGATTTGTTTT
GGTCGGGCTTGCAGGCGCAGGGGATGTTTATTCCCCAGGACCAGGAAAAG
GCAGCCGCGCTCTGGCGGGCTGCGGGATTGAGAGGGGACGAGGAGGGGAC
ATATAACTATGCCAACTGCTTGCTCTTTGGGAGTGGGACCGCAGAGAATC
GATCACAAGCGCAGGGACGGAGTCCGCGCGTGCCTCGTGATGACGAGGTG
GCCTTGGAGCTTTACAGCGCAGGTTTGTGAATGTGCGGCGGAAAGAGGCT
CTCCTCGCCACTATGCTTGCCCGGACCATTCCTGACCCCGCTCTTCCTCT
CTTGCTATAGGGCGACTACCTATCCCGCTTTCCTCCCGCACGGCTTCACC
ACCATCACCCCCTCCAAAGAAGAGCACCATCGGGTCAAGTATCAAGAGGT
CCTGACCAGTCTAGGCGGTAACCTGACTCAAGCTGCTGCCCAGTCATTGA
CTGGTGCCGAGGATATGTTCAGCAGGAGCAGGAGCAGCATGAGCAGCAGA
GGCACTGGTGCCCCTCCTCTAGCGCCTGCGAAGGTCTTGATGGCCGCCAA
GCAGAGTACTGAAGAGCTTCTCGCAGAAGCAGACCCACCTTTGCCACCCG
AAGCATTGTTGTTTCTAGGAGATTTGTTTTGGTCGGGCTTGCAGGCGCAG
GGGATGTTTATTCCCCAGGACCAGGAAAAGGCAGCCGCGCTCTGGCGGGC
TGCGGGATTGAGAGGGGACGAGGAGGGGACATATAACTATGCCAACTGCT
TGCTCTTTGGGAGTGGGACCGCAGAGAATCGATCACAAGCGCAGGGACGG
AGTCCGCGCGTGCCTCGTGATGACGAGGTGGCCTTGGAGCTTTACAGCGC
AGGTTTGTGA
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Synonyms
Publications