jgi.p|Nanoce1779_2|598150, mRNA_7295 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598150
Unique NamemRNA_7295
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length748
Alignment locationscaffold_19:155880..156627 -

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Properties
Property NameValue
TranscriptId598236
TrackFilteredModels2
ProteinId598150
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:155880..156627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598150gene_7295Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598150mRNA_7295-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7295CDS_7295Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7295 ID=mRNA_7295|Name=jgi.p|Nanoce1779_2|598150|organism=Nannochloropsis oceanica|type=mRNA|length=748bp
TGTATGGACAGTGAGTGTGTCTTACAGTAGGCTTAATTTCCTCTTTCCGC
CTCCGCCTCCTCCTTCCCTTGAGTTTCTCTTCCTCCTCTTCCCCTTGTTG
CTATTCCCTCGAGCCGTTCCTCTTCCGCGGTGTTTCATTCTCTCTCTCTC
TCAACCCTCCGTATGAAGATCTTCTTTTTCTTTAACTTTCTCTCTTCCTC
TTTCCCTGTTTCGGTGGCCGCCGTTGGTCCCCCAGCCCAGCTAAACCATT
ATTTGCCCCTCCCTCCCTCCAGCTCTCCCTTCCCATCTCGATGGCTATTT
TTGCTTGTCCACATTCCTGTGATTTTTACAGAGTATTTGACTTTTCTCTC
CTTTTCGACGATTATCCCCTTTTTCTGCTTCTGCTGCTTTTCCTCTTTCT
TCCCCCTTTCTCGAAGTTCTTCTTCCTCTAGCTTCTTTTTCTCTAGAAAG
ACAACCTTGTATGAATTTCCCGTGACAATACATGGGAATAATAGAGAAAT
CTTGTGAGGTTTTCTTGGAAGTAGGAGAGCGGTACAGAGAGAGTATAAGA
GGGACAGCGGAGAAAGATATTACTATAACTATGTATATATGAATGACGCC
AGAGTGGACCGTGCAAAAGTGAGGGGCACGCCTCTCGCTCGCTCTCTCCT
TCTCTGTCCCTCCCTCTCTCTCTCCCTCCCTCTCTCCCTCTCCCTCTCCC
TCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACAC
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protein sequence of jgi.p|Nanoce1779_2|598150

>mRNA_7295-protein ID=mRNA_7295-protein|Name=jgi.p|Nanoce1779_2|598150|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MKIFFFFNFLSSSFPVSVAAVGPPAQLNHYLPLPPSSSPFPSRWLFLLVH
IPVIFTEYLTFLSFSTIIPFFCFCCFSSFFPLSRSSSSSSFFFSRKTTLY
EFPVTIHGNNREIL*
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mRNA from alignment at scaffold_19:155880..156627-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7295 ID=mRNA_7295|Name=jgi.p|Nanoce1779_2|598150|organism=Nannochloropsis oceanica|type=mRNA|length=748bp|location=Sequence derived from alignment at scaffold_19:155880..156627- (Nannochloropsis oceanica)
TGTATGGACAGTGAGTGTGTCTTACAGTAGGCTTAATTTCCTCTTTCCGC
CTCCGCCTCCTCCTTCCCTTGAGTTTCTCTTCCTCCTCTTCCCCTTGTTG
CTATTCCCTCGAGCCGTTCCTCTTCCGCGGTGTTTCATTCTCTCTCTCTC
TCAACCCTCCGTATGAAGATCTTCTTTTTCTTTAACTTTCTCTCTTCCTC
TTTCCCTGTTTCGGTGGCCGCCGTTGGTCCCCCAGCCCAGCTAAACCATT
ATTTGCCCCTCCCTCCCTCCAGCTCTCCCTTCCCATCTCGATGGCTATTT
TTGCTTGTCCACATTCCTGTGATTTTTACAGAGTATTTGACTTTTCTCTC
CTTTTCGACGATTATCCCCTTTTTCTGCTTCTGCTGCTTTTCCTCTTTCT
TCCCCCTTTCTCGAAGTTCTTCTTCCTCTAGCTTCTTTTTCTCTAGAAAG
ACAACCTTGTATGAATTTCCCGTGACAATACATGGGAATAATAGAGAAAT
CTTGTGAGGTTTTCTTGGAAGTAGGAGAGCGGTACAGAGAGAGTATAAGA
GGGACAGCGGAGAAAGATATTACTATAACTATGTATATATGAATGACGCC
AGAGTGGACCGTGCAAAAGTGAGGGGCACGCCTCTCGCTCGCTCTCTCCT
TCTCTGTCCCTCCCTCTCTCTCTCCCTCCCTCTCTCCCTCTCCCTCTCCC
TCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACAC
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Coding sequence (CDS) from alignment at scaffold_19:155880..156627-

>mRNA_7295 ID=mRNA_7295|Name=jgi.p|Nanoce1779_2|598150|organism=Nannochloropsis oceanica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_19:155880..156627- (Nannochloropsis oceanica)
ATGAAGATCTTCTTTTTCTTTAACTTTCTCTCTTCCTCTTTCCCTGTTTC
GGTGGCCGCCGTTGGTCCCCCAGCCCAGCTAAACCATTATTTGCCCCTCC
CTCCCTCCAGCTCTCCCTTCCCATCTCGATGGCTATTTTTGCTTGTCCAC
ATTCCTGTGATTTTTACAGAGTATTTGACTTTTCTCTCCTTTTCGACGAT
TATCCCCTTTTTCTGCTTCTGCTGCTTTTCCTCTTTCTTCCCCCTTTCTC
GAAGTTCTTCTTCCTCTAGCTTCTTTTTCTCTAGAAAGACAACCTTGTAT
GAATTTCCCGTGACAATACATGGGAATAATAGAGAAATCTTGTGA
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Synonyms
Publications