jgi.p|Nanoce1779_2|598132, mRNA_7291 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598132
Unique Name	mRNA_7291
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2247
Alignment location	scaffold_19:140862..143108 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598218
Track	FilteredModels2
ProteinId	598132

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:140862..143108 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598132	gene_7291	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598132	mRNA_7291-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7291	CDS_7291	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:140862..143108+
coding sequence from alignment at scaffold_19:140862..143108+

mRNA sequence

>mRNA_7291 ID=mRNA_7291|Name=jgi.p|Nanoce1779_2|598132|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp
ACAGGCTCAAGCAGCCAAGGCGCCGCAGGGGGACCAAGCTCATTGCGTCT
TTTTATTCTCCCGTGCGTGCCAACCCCCTCGCTGACCCACCCCTCGTAGG
GTCCCGCCGTGTTCTCCCCTCCAAGACACACCCCCAACCGGCCATGGACC
CCCTAACGCAACCCGCTCCCTCCTCCGCCTCCCAACCCTCCTCGGCAATT
CTCGACGAAGAAGAAGCTCTAAATGCTGCTTTAGCCATCAAACTCAGCAA
GCTCCGTGGATTCCGGGAGGTGCTCGACCAAAAATCCCGACAATTGCAAC
TACTTGAGAAGGAAAAGGAGGAACGAGAGGCCTTGTTAAGCCCCCTATTA
GACCAGGTAGACGAGCTTAAGGTTCAAGTGGCGCGACAGCGGGCAGAAAT
CGAGGCGACACATGAAGAAAGCGCACAACGTTCTAGATGTGTGGAGGGTG
AGGTGGCCCAATTAAGAGAGGAAGTGAAGCGACAAAAAGCAGCGGGCAAG
ATGTTGGAAGGGATGCGAAGGGATTATCGTCTGTGCCAAGAGCATTGCGA
GGCTTTCTTGACGACACTGATCCGCTTGAGTCGTCGTCGTCGCAACAGAT
TGCAACCGCCAGGCAGCGGCGGCAGTATCTACAGGAGCAGTAGTCTTGAG
AAAATAGCAGGGGAGGAGGACGCGGTCGGGGTGGAGCAACAAGCCCTCCT
TGACACCTTCTTCCCTCCCTCCCTTACCCCATCTTCGACCTCCATATTCA
CACAATCTCCATTGTGCTCCTCCCCCTCCCGAAGAATAAAGAACAAAGAC
AAAGAGAAGGGAAATTCCAAGGGCGGGCGTCAGCGCCCGCTTTGGACTTC
TCTCCGTGTCCTCGTCGAAGAAGTCGTCTCCCTTCTGGGCGAGCTCCACC
GCAGCCAGTCTGAAGCAACACAAGCACGGCACGAGAAACAAAACTTGGCC
CAGCGTGTGCAGGAAATGGAACAAGATTTGAGAGAAGTGAGGGGGGAGGT
TGACGAGATGAAGATGGTGGTAGAGGCACACTCCCTCCGAGCGGAGGCGG
CAGAGGACGACCTCCTCCACGCCAGGACAGAGGTAGACTCGATGCGTGCA
GTGATGGGACACGAAAGTCAACGTGCCTGCGAAGCGGAGGAAAAGATGGA
GGAGATGAGGGGGCTCATAAAGGCACATGCCTCGCGGACAGAGGCAGCAG
AAAATGAATTGAGAGAGACGAGGCTTCTGGTGGGGGAGTTGGAATCACTA
GCGGGACACTTAAGGGAGAGCGTGGAGGGGCTTGAGGGGGCGAGGGAACA
ACTGAACTCAGAATTAAAAGAGAGGGGTGACTTCTTGGTGGGGCTGGTCG
GGAGGATGAAGCTTCTGGAGGAGGGTGAGGATGAGGAGGAAGGGAGGGCG
GAAGGTGGGGTGGAGGAGGCGGAGGGCCAAAGCGATGTTGATGAGCAAGC
ACGGGGCGCAACGAAGACAGGTCGTAAGCGACTCTTCTTTTCCCCTGACG
GTTCCTCCTCTTTCTCGTTCCTAAGCCTCCAACGCCGCATCGACAAACAC
CTCACTCACCTCATGGCCCGGCTTCAGCTGCTGCACGCGCTGCACGCGGA
CGCCACCCGCGACAGCCATCGCCGTGAAGAGGAACTCCACGCCCTCCACC
AGGCCCTCAAGCAACTAGAAGAACAAAAGGGTGACAATGTGGGAGCAAGG
GAGATCTGCGAGCAACAGCAGGAGCAGCTGCAGGCTTTGGCGGGGCGGGT
AAAGGAGTACAAGGTGGTGGTGCAGGAGAAAGACCGAAACATAATGTTGC
TCGAGGGGGAGTTGATGAAAAATAAGGAGAGAAATGAGAGGCTAGGGGGG
GATTTGGCGAGGTGCCAAGCTGGGAGGGATGGAGAGAGGAGATTGCTGCA
GCAGAGGGTGGAGGAAGCGGGCGCTTGGAAGAGACAAGCGCTCAAACTGC
AGAGGGAAGTAGGGGAGTGGCATGAGAAAATGAAGATGGGTGGTATCTGG
AGTGCAGGTGCTGCTAGAGCTGGTGCTGGTGCTGGTGTCGGACATGGATT
CGGAAGTAGTAGTAGCAGCAGCAGCAACAACGGCAGACGATTTTGGTGAG
TGATGAAAGGTCAAGAAGAGGTGGGGCAGGTGTGAAATATTGTAGATGAG
TGGAGGTCGGGGTGGAGGAGGAGGAGAAGAGGGAAATATTGCCGAAAATT
AATGAGATGAATATAATAAAAGAAACAAAAGAAAATGCAATTCAAAA

protein sequence of jgi.p|Nanoce1779_2|598132

>mRNA_7291-protein ID=mRNA_7291-protein|Name=jgi.p|Nanoce1779_2|598132|organism=Nannochloropsis oceanica|type=polypeptide|length=652bp
MDPLTQPAPSSASQPSSAILDEEEALNAALAIKLSKLRGFREVLDQKSRQ
LQLLEKEKEEREALLSPLLDQVDELKVQVARQRAEIEATHEESAQRSRCV
EGEVAQLREEVKRQKAAGKMLEGMRRDYRLCQEHCEAFLTTLIRLSRRRR
NRLQPPGSGGSIYRSSSLEKIAGEEDAVGVEQQALLDTFFPPSLTPSSTS
IFTQSPLCSSPSRRIKNKDKEKGNSKGGRQRPLWTSLRVLVEEVVSLLGE
LHRSQSEATQARHEKQNLAQRVQEMEQDLREVRGEVDEMKMVVEAHSLRA
EAAEDDLLHARTEVDSMRAVMGHESQRACEAEEKMEEMRGLIKAHASRTE
AAENELRETRLLVGELESLAGHLRESVEGLEGAREQLNSELKERGDFLVG
LVGRMKLLEEGEDEEEGRAEGGVEEAEGQSDVDEQARGATKTGRKRLFFS
PDGSSSFSFLSLQRRIDKHLTHLMARLQLLHALHADATRDSHRREEELHA
LHQALKQLEEQKGDNVGAREICEQQQEQLQALAGRVKEYKVVVQEKDRNI
MLLEGELMKNKERNERLGGDLARCQAGRDGERRLLQQRVEEAGAWKRQAL
KLQREVGEWHEKMKMGGIWSAGAARAGAGAGVGHGFGSSSSSSSNNGRRF
W*

mRNA from alignment at scaffold_19:140862..143108+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7291 ID=mRNA_7291|Name=jgi.p|Nanoce1779_2|598132|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp|location=Sequence derived from alignment at scaffold_19:140862..143108+ (Nannochloropsis oceanica)
ACAGGCTCAAGCAGCCAAGGCGCCGCAGGGGGACCAAGCTCATTGCGTCT
TTTTATTCTCCCGTGCGTGCCAACCCCCTCGCTGACCCACCCCTCGTAGG
GTCCCGCCGTGTTCTCCCCTCCAAGACACACCCCCAACCGGCCATGGACC
CCCTAACGCAACCCGCTCCCTCCTCCGCCTCCCAACCCTCCTCGGCAATT
CTCGACGAAGAAGAAGCTCTAAATGCTGCTTTAGCCATCAAACTCAGCAA
GCTCCGTGGATTCCGGGAGGTGCTCGACCAAAAATCCCGACAATTGCAAC
TACTTGAGAAGGAAAAGGAGGAACGAGAGGCCTTGTTAAGCCCCCTATTA
GACCAGGTAGACGAGCTTAAGGTTCAAGTGGCGCGACAGCGGGCAGAAAT
CGAGGCGACACATGAAGAAAGCGCACAACGTTCTAGATGTGTGGAGGGTG
AGGTGGCCCAATTAAGAGAGGAAGTGAAGCGACAAAAAGCAGCGGGCAAG
ATGTTGGAAGGGATGCGAAGGGATTATCGTCTGTGCCAAGAGCATTGCGA
GGCTTTCTTGACGACACTGATCCGCTTGAGTCGTCGTCGTCGCAACAGAT
TGCAACCGCCAGGCAGCGGCGGCAGTATCTACAGGAGCAGTAGTCTTGAG
AAAATAGCAGGGGAGGAGGACGCGGTCGGGGTGGAGCAACAAGCCCTCCT
TGACACCTTCTTCCCTCCCTCCCTTACCCCATCTTCGACCTCCATATTCA
CACAATCTCCATTGTGCTCCTCCCCCTCCCGAAGAATAAAGAACAAAGAC
AAAGAGAAGGGAAATTCCAAGGGCGGGCGTCAGCGCCCGCTTTGGACTTC
TCTCCGTGTCCTCGTCGAAGAAGTCGTCTCCCTTCTGGGCGAGCTCCACC
GCAGCCAGTCTGAAGCAACACAAGCACGGCACGAGAAACAAAACTTGGCC
CAGCGTGTGCAGGAAATGGAACAAGATTTGAGAGAAGTGAGGGGGGAGGT
TGACGAGATGAAGATGGTGGTAGAGGCACACTCCCTCCGAGCGGAGGCGG
CAGAGGACGACCTCCTCCACGCCAGGACAGAGGTAGACTCGATGCGTGCA
GTGATGGGACACGAAAGTCAACGTGCCTGCGAAGCGGAGGAAAAGATGGA
GGAGATGAGGGGGCTCATAAAGGCACATGCCTCGCGGACAGAGGCAGCAG
AAAATGAATTGAGAGAGACGAGGCTTCTGGTGGGGGAGTTGGAATCACTA
GCGGGACACTTAAGGGAGAGCGTGGAGGGGCTTGAGGGGGCGAGGGAACA
ACTGAACTCAGAATTAAAAGAGAGGGGTGACTTCTTGGTGGGGCTGGTCG
GGAGGATGAAGCTTCTGGAGGAGGGTGAGGATGAGGAGGAAGGGAGGGCG
GAAGGTGGGGTGGAGGAGGCGGAGGGCCAAAGCGATGTTGATGAGCAAGC
ACGGGGCGCAACGAAGACAGGTCGTAAGCGACTCTTCTTTTCCCCTGACG
GTTCCTCCTCTTTCTCGTTCCTAAGCCTCCAACGCCGCATCGACAAACAC
CTCACTCACCTCATGGCCCGGCTTCAGCTGCTGCACGCGCTGCACGCGGA
CGCCACCCGCGACAGCCATCGCCGTGAAGAGGAACTCCACGCCCTCCACC
AGGCCCTCAAGCAACTAGAAGAACAAAAGGGTGACAATGTGGGAGCAAGG
GAGATCTGCGAGCAACAGCAGGAGCAGCTGCAGGCTTTGGCGGGGCGGGT
AAAGGAGTACAAGGTGGTGGTGCAGGAGAAAGACCGAAACATAATGTTGC
TCGAGGGGGAGTTGATGAAAAATAAGGAGAGAAATGAGAGGCTAGGGGGG
GATTTGGCGAGGTGCCAAGCTGGGAGGGATGGAGAGAGGAGATTGCTGCA
GCAGAGGGTGGAGGAAGCGGGCGCTTGGAAGAGACAAGCGCTCAAACTGC
AGAGGGAAGTAGGGGAGTGGCATGAGAAAATGAAGATGGGTGGTATCTGG
AGTGCAGGTGCTGCTAGAGCTGGTGCTGGTGCTGGTGTCGGACATGGATT
CGGAAGTAGTAGTAGCAGCAGCAGCAACAACGGCAGACGATTTTGGTGAG
TGATGAAAGGTCAAGAAGAGGTGGGGCAGGTGTGAAATATTGTAGATGAG
TGGAGGTCGGGGTGGAGGAGGAGGAGAAGAGGGAAATATTGCCGAAAATT
AATGAGATGAATATAATAAAAGAAACAAAAGAAAATGCAATTCAAAA

Coding sequence (CDS) from alignment at scaffold_19:140862..143108+

>mRNA_7291 ID=mRNA_7291|Name=jgi.p|Nanoce1779_2|598132|organism=Nannochloropsis oceanica|type=CDS|length=1956bp|location=Sequence derived from alignment at scaffold_19:140862..143108+ (Nannochloropsis oceanica)
ATGGACCCCCTAACGCAACCCGCTCCCTCCTCCGCCTCCCAACCCTCCTC
GGCAATTCTCGACGAAGAAGAAGCTCTAAATGCTGCTTTAGCCATCAAAC
TCAGCAAGCTCCGTGGATTCCGGGAGGTGCTCGACCAAAAATCCCGACAA
TTGCAACTACTTGAGAAGGAAAAGGAGGAACGAGAGGCCTTGTTAAGCCC
CCTATTAGACCAGGTAGACGAGCTTAAGGTTCAAGTGGCGCGACAGCGGG
CAGAAATCGAGGCGACACATGAAGAAAGCGCACAACGTTCTAGATGTGTG
GAGGGTGAGGTGGCCCAATTAAGAGAGGAAGTGAAGCGACAAAAAGCAGC
GGGCAAGATGTTGGAAGGGATGCGAAGGGATTATCGTCTGTGCCAAGAGC
ATTGCGAGGCTTTCTTGACGACACTGATCCGCTTGAGTCGTCGTCGTCGC
AACAGATTGCAACCGCCAGGCAGCGGCGGCAGTATCTACAGGAGCAGTAG
TCTTGAGAAAATAGCAGGGGAGGAGGACGCGGTCGGGGTGGAGCAACAAG
CCCTCCTTGACACCTTCTTCCCTCCCTCCCTTACCCCATCTTCGACCTCC
ATATTCACACAATCTCCATTGTGCTCCTCCCCCTCCCGAAGAATAAAGAA
CAAAGACAAAGAGAAGGGAAATTCCAAGGGCGGGCGTCAGCGCCCGCTTT
GGACTTCTCTCCGTGTCCTCGTCGAAGAAGTCGTCTCCCTTCTGGGCGAG
CTCCACCGCAGCCAGTCTGAAGCAACACAAGCACGGCACGAGAAACAAAA
CTTGGCCCAGCGTGTGCAGGAAATGGAACAAGATTTGAGAGAAGTGAGGG
GGGAGGTTGACGAGATGAAGATGGTGGTAGAGGCACACTCCCTCCGAGCG
GAGGCGGCAGAGGACGACCTCCTCCACGCCAGGACAGAGGTAGACTCGAT
GCGTGCAGTGATGGGACACGAAAGTCAACGTGCCTGCGAAGCGGAGGAAA
AGATGGAGGAGATGAGGGGGCTCATAAAGGCACATGCCTCGCGGACAGAG
GCAGCAGAAAATGAATTGAGAGAGACGAGGCTTCTGGTGGGGGAGTTGGA
ATCACTAGCGGGACACTTAAGGGAGAGCGTGGAGGGGCTTGAGGGGGCGA
GGGAACAACTGAACTCAGAATTAAAAGAGAGGGGTGACTTCTTGGTGGGG
CTGGTCGGGAGGATGAAGCTTCTGGAGGAGGGTGAGGATGAGGAGGAAGG
GAGGGCGGAAGGTGGGGTGGAGGAGGCGGAGGGCCAAAGCGATGTTGATG
AGCAAGCACGGGGCGCAACGAAGACAGGTCGTAAGCGACTCTTCTTTTCC
CCTGACGGTTCCTCCTCTTTCTCGTTCCTAAGCCTCCAACGCCGCATCGA
CAAACACCTCACTCACCTCATGGCCCGGCTTCAGCTGCTGCACGCGCTGC
ACGCGGACGCCACCCGCGACAGCCATCGCCGTGAAGAGGAACTCCACGCC
CTCCACCAGGCCCTCAAGCAACTAGAAGAACAAAAGGGTGACAATGTGGG
AGCAAGGGAGATCTGCGAGCAACAGCAGGAGCAGCTGCAGGCTTTGGCGG
GGCGGGTAAAGGAGTACAAGGTGGTGGTGCAGGAGAAAGACCGAAACATA
ATGTTGCTCGAGGGGGAGTTGATGAAAAATAAGGAGAGAAATGAGAGGCT
AGGGGGGGATTTGGCGAGGTGCCAAGCTGGGAGGGATGGAGAGAGGAGAT
TGCTGCAGCAGAGGGTGGAGGAAGCGGGCGCTTGGAAGAGACAAGCGCTC
AAACTGCAGAGGGAAGTAGGGGAGTGGCATGAGAAAATGAAGATGGGTGG
TATCTGGAGTGCAGGTGCTGCTAGAGCTGGTGCTGGTGCTGGTGTCGGAC
ATGGATTCGGAAGTAGTAGTAGCAGCAGCAGCAACAACGGCAGACGATTT
TGGTGA

Synonyms

Publications