jgi.p|Nanoce1779_2|598130, mRNA_7290 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598130
Unique NamemRNA_7290
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1405
Alignment locationscaffold_19:139122..140526 -

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Properties
Property NameValue
TranscriptId598216
TrackFilteredModels2
ProteinId598130
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:139122..140526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598130gene_7290Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598130mRNA_7290-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7290CDS_7290Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7290 ID=mRNA_7290|Name=jgi.p|Nanoce1779_2|598130|organism=Nannochloropsis oceanica|type=mRNA|length=1405bp
ACAGATCACCATGGATACTTCGAGCAGCAGAAGACAAACCTACCGGCTGA
GCTATCTAGTCTTCCTTCTCCTGGCGACGTTTCTGCGGCACGTCGTACAG
TCCTTTGTCCTCCAAAGGCCCGCTACACGACGACCTCCCCTACAACAGAC
TGCCTCCCTCTCTGTTGCCTCTGCCCCCTCCCAAACCCGCCGTCAGTCCT
CCTCCTTCTTGTACCCCTTAACCTCGCTTCATGCCGCCGCTGATGGCGCA
GAGAATGACAAAGAAGATGCCAACGGCGGCAGCTCCACTTCATCTCTCTC
CTCCCCCTTCCCCGACGACCGGCCTTTAAACTCGGTGGAGCAACGGAGAA
TAGACCGGGCCGCCAAGACGGACAAGGCCCGCAAGCTAAGTAAGAATGCG
CGGTTGATGGACGACTTTTTTGGGAAGCGCATGGGGGCAGGCACGGTCTT
TTATGGGGAGAGCTTATCGGATCTGGATGATGAGGCCTATGCCAAAAAAG
TTGAGGCAAGTAACGACAATGACGCCCGATTAGAGATCAAGGCGCTGCGC
GAGAACCCAGTGGTGGTCGTAGGAGCGACGGGTAAGACGGGACAGTGGGT
GGTTACTGATCTGTTGAGCAAGGGGTTTAGTGTGAGGGCGTTCGTCCGGA
ATTTGGACAAGGCAGAGGATCTATTTGGTTGGGATGGTTCGAATCTGGAT
TTGTTTGAGGGGAATGTCAAAGATTTGAGCGCGCTGACTGAAGTGATGAA
GGGCGCGTTAGCTGTTATATATTGCGCGGGGTCCCGGGAAGTGATTGGCA
CGAATACCTTTTCGCAGGTTGATGGCCTGGGTGTCGAGAACGCGGTCAAG
GCTGCTGAGCTCTCCGGAGAGGGCGGGGTACCTTCAGTCCGCAAATTCAT
TTTGCTGTCGAGCATCGGCGTCTCCAAACCGGACGGGTATGGTTTTGTAG
GTAAGCTTCTAGGGGACCCTTTGAAGGCCAAGGCGCGGGGGGAGGACGCG
GTTCGAAAGGGGAATTTGGAGTCGTATTGCATAGTGCGCGCCGGGGGTTT
GAGGGACGGGGATGGAACCAAGCGCGCGATCGAGATAGGGCAAGGGGACA
TGTTTGGGAAGTGTGGGGTATCGCGGTTAGATGTGGCCCAGATGCTTGTG
CAGGCATTGGTGCAGGATGTGAATAATGTGACGTTTGAGGTAAAGAACGA
TGACAGTCGGCAGGAGGACCAGGAGAGGTTAAATAACATTTTGTCAACGC
CGGACCAGAGGCAGATCGTCGAGTACTTTTTGACAGAGGACGCGAAGGAC
GAGGAGATGTGGGGGCAGCGGTTGAGTGCGTTGAAGCCAGATGTGCTTTG
AGTCGTCGTGCAAGTAAGTAGCGAGACAAGGGGAAGAAAGAAAAGCTATT
GGGTC
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protein sequence of jgi.p|Nanoce1779_2|598130

>mRNA_7290-protein ID=mRNA_7290-protein|Name=jgi.p|Nanoce1779_2|598130|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MDTSSSRRQTYRLSYLVFLLLATFLRHVVQSFVLQRPATRRPPLQQTASL
SVASAPSQTRRQSSSFLYPLTSLHAAADGAENDKEDANGGSSTSSLSSPF
PDDRPLNSVEQRRIDRAAKTDKARKLSKNARLMDDFFGKRMGAGTVFYGE
SLSDLDDEAYAKKVEASNDNDARLEIKALRENPVVVVGATGKTGQWVVTD
LLSKGFSVRAFVRNLDKAEDLFGWDGSNLDLFEGNVKDLSALTEVMKGAL
AVIYCAGSREVIGTNTFSQVDGLGVENAVKAAELSGEGGVPSVRKFILLS
SIGVSKPDGYGFVGKLLGDPLKAKARGEDAVRKGNLESYCIVRAGGLRDG
DGTKRAIEIGQGDMFGKCGVSRLDVAQMLVQALVQDVNNVTFEVKNDDSR
QEDQERLNNILSTPDQRQIVEYFLTEDAKDEEMWGQRLSALKPDVL*
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mRNA from alignment at scaffold_19:139122..140526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7290 ID=mRNA_7290|Name=jgi.p|Nanoce1779_2|598130|organism=Nannochloropsis oceanica|type=mRNA|length=1405bp|location=Sequence derived from alignment at scaffold_19:139122..140526- (Nannochloropsis oceanica)
ACAGATCACCATGGATACTTCGAGCAGCAGAAGACAAACCTACCGGCTGA
GCTATCTAGTCTTCCTTCTCCTGGCGACGTTTCTGCGGCACGTCGTACAG
TCCTTTGTCCTCCAAAGGCCCGCTACACGACGACCTCCCCTACAACAGAC
TGCCTCCCTCTCTGTTGCCTCTGCCCCCTCCCAAACCCGCCGTCAGTCCT
CCTCCTTCTTGTACCCCTTAACCTCGCTTCATGCCGCCGCTGATGGCGCA
GAGAATGACAAAGAAGATGCCAACGGCGGCAGCTCCACTTCATCTCTCTC
CTCCCCCTTCCCCGACGACCGGCCTTTAAACTCGGTGGAGCAACGGAGAA
TAGACCGGGCCGCCAAGACGGACAAGGCCCGCAAGCTAAGTAAGAATGCG
CGGTTGATGGACGACTTTTTTGGGAAGCGCATGGGGGCAGGCACGGTCTT
TTATGGGGAGAGCTTATCGGATCTGGATGATGAGGCCTATGCCAAAAAAG
TTGAGGCAAGTAACGACAATGACGCCCGATTAGAGATCAAGGCGCTGCGC
GAGAACCCAGTGGTGGTCGTAGGAGCGACGGGTAAGACGGGACAGTGGGT
GGTTACTGATCTGTTGAGCAAGGGGTTTAGTGTGAGGGCGTTCGTCCGGA
ATTTGGACAAGGCAGAGGATCTATTTGGTTGGGATGGTTCGAATCTGGAT
TTGTTTGAGGGGAATGTCAAAGATTTGAGCGCGCTGACTGAAGTGATGAA
GGGCGCGTTAGCTGTTATATATTGCGCGGGGTCCCGGGAAGTGATTGGCA
CGAATACCTTTTCGCAGGTTGATGGCCTGGGTGTCGAGAACGCGGTCAAG
GCTGCTGAGCTCTCCGGAGAGGGCGGGGTACCTTCAGTCCGCAAATTCAT
TTTGCTGTCGAGCATCGGCGTCTCCAAACCGGACGGGTATGGTTTTGTAG
GTAAGCTTCTAGGGGACCCTTTGAAGGCCAAGGCGCGGGGGGAGGACGCG
GTTCGAAAGGGGAATTTGGAGTCGTATTGCATAGTGCGCGCCGGGGGTTT
GAGGGACGGGGATGGAACCAAGCGCGCGATCGAGATAGGGCAAGGGGACA
TGTTTGGGAAGTGTGGGGTATCGCGGTTAGATGTGGCCCAGATGCTTGTG
CAGGCATTGGTGCAGGATGTGAATAATGTGACGTTTGAGGTAAAGAACGA
TGACAGTCGGCAGGAGGACCAGGAGAGGTTAAATAACATTTTGTCAACGC
CGGACCAGAGGCAGATCGTCGAGTACTTTTTGACAGAGGACGCGAAGGAC
GAGGAGATGTGGGGGCAGCGGTTGAGTGCGTTGAAGCCAGATGTGCTTTG
AGTCGTCGTGCAAGTAAGTAGCGAGACAAGGGGAAGAAAGAAAAGCTATT
GGGTC
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Coding sequence (CDS) from alignment at scaffold_19:139122..140526-

>mRNA_7290 ID=mRNA_7290|Name=jgi.p|Nanoce1779_2|598130|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_19:139122..140526- (Nannochloropsis oceanica)
ATGGATACTTCGAGCAGCAGAAGACAAACCTACCGGCTGAGCTATCTAGT
CTTCCTTCTCCTGGCGACGTTTCTGCGGCACGTCGTACAGTCCTTTGTCC
TCCAAAGGCCCGCTACACGACGACCTCCCCTACAACAGACTGCCTCCCTC
TCTGTTGCCTCTGCCCCCTCCCAAACCCGCCGTCAGTCCTCCTCCTTCTT
GTACCCCTTAACCTCGCTTCATGCCGCCGCTGATGGCGCAGAGAATGACA
AAGAAGATGCCAACGGCGGCAGCTCCACTTCATCTCTCTCCTCCCCCTTC
CCCGACGACCGGCCTTTAAACTCGGTGGAGCAACGGAGAATAGACCGGGC
CGCCAAGACGGACAAGGCCCGCAAGCTAAGTAAGAATGCGCGGTTGATGG
ACGACTTTTTTGGGAAGCGCATGGGGGCAGGCACGGTCTTTTATGGGGAG
AGCTTATCGGATCTGGATGATGAGGCCTATGCCAAAAAAGTTGAGGCAAG
TAACGACAATGACGCCCGATTAGAGATCAAGGCGCTGCGCGAGAACCCAG
TGGTGGTCGTAGGAGCGACGGGTAAGACGGGACAGTGGGTGGTTACTGAT
CTGTTGAGCAAGGGGTTTAGTGTGAGGGCGTTCGTCCGGAATTTGGACAA
GGCAGAGGATCTATTTGGTTGGGATGGTTCGAATCTGGATTTGTTTGAGG
GGAATGTCAAAGATTTGAGCGCGCTGACTGAAGTGATGAAGGGCGCGTTA
GCTGTTATATATTGCGCGGGGTCCCGGGAAGTGATTGGCACGAATACCTT
TTCGCAGGTTGATGGCCTGGGTGTCGAGAACGCGGTCAAGGCTGCTGAGC
TCTCCGGAGAGGGCGGGGTACCTTCAGTCCGCAAATTCATTTTGCTGTCG
AGCATCGGCGTCTCCAAACCGGACGGGTATGGTTTTGTAGGTAAGCTTCT
AGGGGACCCTTTGAAGGCCAAGGCGCGGGGGGAGGACGCGGTTCGAAAGG
GGAATTTGGAGTCGTATTGCATAGTGCGCGCCGGGGGTTTGAGGGACGGG
GATGGAACCAAGCGCGCGATCGAGATAGGGCAAGGGGACATGTTTGGGAA
GTGTGGGGTATCGCGGTTAGATGTGGCCCAGATGCTTGTGCAGGCATTGG
TGCAGGATGTGAATAATGTGACGTTTGAGGTAAAGAACGATGACAGTCGG
CAGGAGGACCAGGAGAGGTTAAATAACATTTTGTCAACGCCGGACCAGAG
GCAGATCGTCGAGTACTTTTTGACAGAGGACGCGAAGGACGAGGAGATGT
GGGGGCAGCGGTTGAGTGCGTTGAAGCCAGATGTGCTTTGA
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Synonyms
Publications