jgi.p|Nanoce1779_2|598127, mRNA_7289 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598127
Unique Name	mRNA_7289
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1627
Alignment location	scaffold_19:136772..139104 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598213
Track	FilteredModels2
ProteinId	598127

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:136772..139104 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598127	gene_7289	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598127	mRNA_7289-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7289	CDS_7289	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:136772..139104+
coding sequence from alignment at scaffold_19:136772..139104+

mRNA sequence

>mRNA_7289 ID=mRNA_7289|Name=jgi.p|Nanoce1779_2|598127|organism=Nannochloropsis oceanica|type=mRNA|length=1627bp
CAGAAACACAACACAAAACTACCCCATCCACGCACACCATGATGGCCAGC
AGCGCCGCCATGTTGGCCCGCAGTCTGGGTCGGGCGGCGAGAAGATTAAG
AGGCAGCGGTGGTGGCGATGCGCGCTCATTGTCGACGATGCCCGGGAGCA
ACAATCGTCACTCTTTTCAGCCTAATACGCAGCAGCGCCGCCGCCCTTCC
TCGAGCTTGGGCTCCCTGAACTACCCGCACGTGGCTCCTGATCCTCTGGC
AGACCCGACTGTCTTTGACGATATAAATACGTATTCCTGCAAGCGCCAGA
CGGGTGTGTCTCTCAAGACGTTGTTGGACACAGGACGAGGGCATCTATTG
CAGAAAAAATATTTTGGGAAGGAAGAGAATACGACGGCCAGTCAGCAGAT
GCTTCAGCAGGTAGCTTGTTTTTTGCACCGGGAGCTGCCCATCCGCCTTG
CCCACCGCGTACGGGACTTGGACGCCATCCCGGTGATGCGCGAAATGCCC
TCCATCCAACTCGTCAAGACCTGGTACGTCAAATCCTTCCACGAGCTCCG
GAACACCCCCACGCCCAATACTGTGGCCAAAGAGGCTGACTTCGCCGTTT
TACTCAAAAATATCTACGAGCGACACGCCCCCGTCCTTCTAACCATGGCT
CGAGGCGCCTATGAACTGAGGCAAAAGTACGTGGCAGGCTCCAGCGAATT
TTATGACTTGGAGGTGCATAACTTCCTGGACGCATTCTATTTGAGCCGCA
TCGGGATCCGGATGCTGATCGGGCAGTACTTGGAACTCCGCGAACCTCCC
AAGCCGGACTACATTGGTCTCTGTTGCCTCCGCACTTCCCCCCGCGATGT
CGCTCTCACTGCGATCGAAGACGCCAAGTACATGTGCACGCGTCAGCACG
GAGACGCACCCGAGGTGACCTTGCACGGTCGTCTCGATTTGACCTTCGCG
TATGTCTCCGAGCACGTCCATTACATTTTGTTAGAACTTTTGAAGAACAG
TATGAGAGCCACGGCGGAATTTCATGGGACGGATGACATGCCGCCGATTC
GAATAGTGATTGCGGACGGGGAGGATAATGAGGATGTGGTGATAAAGGTG
TCTGATGAGGGAGGGGGGATCCCACGCTCGCATATAAGTAGGATCTGGAG
TTATTTGTTCACGACTGCCGACCCCGAGATCCAGAGGGGGTTTGTGGATC
TGTCGCATCCGGCGTCGGATTTTGATACGGCGAGTCCTTTGGCGGGGTTG
GGGTATGGATTGCCGATTAGTCGTGCATACGCGCGGTATTTTGGGGGGGA
TTTGTCAATTATGTCTATGGAGGGGTACGGGACTGATGCGTTTGTGCATT
TGAGTCGGTTGGGGAACCATGACGAGCCTCTGCCTTAAGTGCGAGAGAGA
GCGGGGAAAAAAAAAGGGGGGGCTCCCCGAGTTTTGGCGTCTGGGCGTGT
GTGTGTATGAGATGGGGAAAAGGGGGTTGGGTGCCTATCCTATCCAACAA
CAGACAGAAGCAAAAGAGAAAGAATCATATACTGAAGGACCAAACAGGAA
AGTTCCCCGTCCGTGATCATACGGAGTGCGTATAAATACACAGAACAGAA
AAGAACATCGTTATGTGGTGGCAAGGC

protein sequence of jgi.p|Nanoce1779_2|598127

>mRNA_7289-protein ID=mRNA_7289-protein|Name=jgi.p|Nanoce1779_2|598127|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MMASSAAMLARSLGRAARRLRGSGGGDARSLSTMPGSNNRHSFQPNTQQR
RRPSSSLGSLNYPHVAPDPLADPTVFDDINTYSCKRQTGVSLKTLLDTGR
GHLLQKKYFGKEENTTASQQMLQQVACFLHRELPIRLAHRVRDLDAIPVM
REMPSIQLVKTWYVKSFHELRNTPTPNTVAKEADFAVLLKNIYERHAPVL
LTMARGAYELRQKYVAGSSEFYDLEVHNFLDAFYLSRIGIRMLIGQYLEL
REPPKPDYIGLCCLRTSPRDVALTAIEDAKYMCTRQHGDAPEVTLHGRLD
LTFAYVSEHVHYILLELLKNSMRATAEFHGTDDMPPIRIVIADGEDNEDV
VIKVSDEGGGIPRSHISRIWSYLFTTADPEIQRGFVDLSHPASDFDTASP
LAGLGYGLPISRAYARYFGGDLSIMSMEGYGTDAFVHLSRLGNHDEPLP*

mRNA from alignment at scaffold_19:136772..139104+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7289 ID=mRNA_7289|Name=jgi.p|Nanoce1779_2|598127|organism=Nannochloropsis oceanica|type=mRNA|length=2333bp|location=Sequence derived from alignment at scaffold_19:136772..139104+ (Nannochloropsis oceanica)
CAGAAACACAACACAAAACTACCCCATCCACGCACACCATGATGGCCAGC
AGCGCCGCCATGTTGGCCCGCAGTCTGGGTCGGGCGGCGAGAAGATTAAG
AGGCAGCGGTGGTGGCGATGCGCGCTCATTGTCGACGATGCCCGGGAGCA
ACAATCGTCACTCTTTTCAGCCTAATACGCAGCAGCGCCGCCGCCCTTCC
TCGAGCTTGGGCTCCCTGAACTACCCGCACGTGGCTCCTGATCCTCTGGC
AGACCCGACTGTCTTTGACGATATAAATACGTATTCCTGCAAGCGCCAGA
CGGGTGTGTCTCTCAAGACGTTGTTGGACACAGGTACGTGAAGAGGGAAT
GGAGGGGGAGAGTTGAGTAGTGGAAAGACGGGTGGTAGATTTGAATCACA
TGCTCCTTCCCCGTGATCGAGAGAGAAAGTAGAATGTAAGGTAGACAATG
GCTGGAACCCTGCCAGTTGATCGGAGGGTATGAATGTCAAAGACAGCTTC
CTCTTTACCGACCCCTCTTAAACCCTCCCCCTTTTTTGCATGCACAGGAC
GAGGGCATCTATTGCAGAAAAAATATTTTGGGAAGGAAGAGAATACGACG
GCCAGTCAGCAGATGCTTCAGCAGGTAGCTTGTTTTTTGCACCGGGAGCT
GCCCATCCGCCTTGCCCACCGCGTACGGGACTTGGACGCCATGTACGTTC
TTATGTGTGATACACATGTGCAGCATTAGTATGTTTGAATCATGGATCCT
GCATACATGCATGTGTGGTAGATGTATGCTATTTTTTTAAGTCTCCGAAT
CTGATTTGGACCAGCGAAGTATTTGGATGCATTGCTTCACTCTATCTTGC
GACGCGTCTTAACAGCTTGGCCAAACAAAATCATGAGGGCATAACCCTCC
CTCCCTCCCTCCCTCCTGCCCTCTTTCCCTTCCCTTAAGCCCGGTGATGC
GCGAAATGCCCTCCATCCAACTCGTCAAGACCTGGTACGTCAAATCCTTC
CACGAGCTCCGGAACACCCCCACGCCCAATACTGTGGCCAAAGAGGCTGA
CTTCGCCGTTTTACTCAAAAATATCTACGAGCGACACGCCCCCGTCCTTC
TAACCATGGCTCGAGGCGCCTATGAACTGAGGCAAAAGTACGTGGCAGGC
TCCAGCGAATTTTATGACTTGGAGGTGCATAACTTCCTGGACGCATTCTA
TTTGAGCCGCATCGGGATCCGGATGCTGATCGGGCAGTACTTGGGTGAGT
AGTTGGAAGGGAGGGAGGGAGGGAGGGAGAGAGAGAGGGAGGGAGGGACA
AGTGGGTTGATGAGAAGTCGCAGCTCTCGGCTTCGCGCACATGATGACTC
AAGCGCTGCAGTCGATGCTACGTCCACAACTCCTCGTGTGACAATGCCTT
GGCCGCAATCGAAGATGCTTACACACACTCACTTCTATACGCAATCCTTC
CTCGCTTTCTCCCTCGCTCCCTCCCTCCCACTCAATTAGAACTCCGCGAA
CCTCCCAAGCCGGACTACATTGGTCTCTGTTGCCTCCGCACTTCCCCCCG
CGATGTCGCTCTCACTGCGATCGAAGACGCCAAGTACATGTGCACGCGTC
AGCACGGAGACGCACCCGAGGTGACCTTGCACGGTCGTCTCGATTTGACC
TTCGCGTATGTCTCCGAGCACGTCCATTACATTTTGTTAGAACTTTTGAA
GAACAGTATGAGAGCCACGGCGGAATTTCATGGGACGGATGACATGCCGC
CGATTCGAATAGTGATTGCGGACGGGGAGGATAATGAGGATGTGGTGATA
AAGGTGTCTGATGAGGGAGGGGGGATCCCACGCTCGCATATAAGTAGGAT
CTGGAGTTATTTGTTCACGACTGCCGACCCCGAGATCCAGAGGGGGTTTG
TGGATCTGTCGCATCCGGCGTCGGATTTTGATACGGCGAGTCCTTTGGCG
GGGTTGGGGTATGGATTGCCGATTAGTCGTGCATACGCGCGGTATTTTGG
GGGGGATTTGTCAATTATGTCTATGGAGGGGTACGGGACTGATGCGTTTG
TGCATTTGAGTCGGTTGGGGAACCATGACGAGCCTCTGCCTTAAGTGCGA
GAGAGAGCGGGGAAAAAAAAAGGGGGGGCTCCCCGAGTTTTGGCGTCTGG
GCGTGTGTGTGTATGAGATGGGGAAAAGGGGGTTGGGTGCCTATCCTATC
CAACAACAGACAGAAGCAAAAGAGAAAGAATCATATACTGAAGGACCAAA
CAGGAAAGTTCCCCGTCCGTGATCATACGGAGTGCGTATAAATACACAGA
ACAGAAAAGAACATCGTTATGTGGTGGCAAGGC

Coding sequence (CDS) from alignment at scaffold_19:136772..139104+

>mRNA_7289 ID=mRNA_7289|Name=jgi.p|Nanoce1779_2|598127|organism=Nannochloropsis oceanica|type=CDS|length=5400bp|location=Sequence derived from alignment at scaffold_19:136772..139104+ (Nannochloropsis oceanica)
ATGATGGCCAGCAGCGCCGCCATGTTGGCCCGCAGTCTGGGTCGGGCGGC
GAGAAGATTAAGAGGCAGCGGTGGTGGCGATGCGCGCTCATTGTCGACGA
TGCCCGGGAGCAACAATCGTCACTCTTTTCAGCCTAATACGCAGCAGCGC
CGCCGCCCTTCCTCGAGCTTGGGCTCCCTGAACTACCCGCACGTGGCTCC
TGATCCTCTGGCAGACCCGACTGTCTTTGACGATATAAATACGTATTCCT
GCAAGCGCCAGACGGGTGTGTCTCTCAAGACGTTGTTGGACACAGGACGA
GGGCATCTATTGCAGAAAAAATATTTTGGGAAGGAAGAGAATACGACGGC
CAGTCAGCAGATGCTTCAGCAGGTAGCTTGTTTTTTGCACCGGGAGCTGC
CCATCCGCCTTGCCCACCGCGTACGGGACTTGGACGCCATCCCGGTGATG
CGCGAAATGCCCTCCATCCAACTCGTCAAGACCTGGTACGTCAAATCCTT
CCACGAGCTCCGGAACACCCCCACGCCCAATACTGTGGCCAAAGAGGCTG
ACTTCGCCGTTTTACTCAAAAATATCTACGAGCGACACGCCCCCGTCCTT
CTAACCATGGCTCGAGGCGCCTATGAACTGAGGCAAAAGTACGTGGCAGG
CTCCAGCGAATTTTATGACTTGGAGGTGCATAACTTCCTGGACGCATTCT
ATTTGAGCCGCATCGGGATCCGGATGCTGATCGGGCAGTACTTGGAACTC
CGCGAACCTCCCAAGCCGGACTACATTGGTCTCTGTTGCCTCCGCACTTC
CCCCCGCGATGTCGCTCTCACTGCGATCGAAGACGCCAAGTACATGTGCA
CGCGTCAGCACGGAGACGCACCCGAGGTGACCTTGCACGGTCGTCTCGAT
TTGACCTTCGCGTATGTCTCCGAGCACGTCCATTACATTTTGTTAGAACT
TTTGAAGAACAGTATGAGAGCCACGGCGGAATTTCATGGGACGGATGACA
TGCCGCCGATTCGAATAGTGATTGCGGACGGGGAGGATAATGAGGATGTG
GTGATAAAGGTGTCTGATGAGGGAGGGGGGATCCCACGCTCGCATATAAG
TAGGATCTGGAGTTATTTGTTCACGACTGCCGACCCCGAGATCCAGAGGG
GGTTTGTGGATCTGTCGCATCCGGCGTCGGATTTTGATACGGCGAGTCCT
TTGGCGGGGTTGGGGTATGGATTGCCGATTAGTCGTGCATACGCGCGGTA
TTTTGGGGGGGATTTGTCAATTATGTCTATGGAGGGGTACGGGACTGATG
CGTTTGTGCATTTGAGTCGGTTGGGGAACCATGACGAGCCTCTGCCTTAA
ATGATGGCCAGCAGCGCCGCCATGTTGGCCCGCAGTCTGGGTCGGGCGGC
GAGAAGATTAAGAGGCAGCGGTGGTGGCGATGCGCGCTCATTGTCGACGA
TGCCCGGGAGCAACAATCGTCACTCTTTTCAGCCTAATACGCAGCAGCGC
CGCCGCCCTTCCTCGAGCTTGGGCTCCCTGAACTACCCGCACGTGGCTCC
TGATCCTCTGGCAGACCCGACTGTCTTTGACGATATAAATACGTATTCCT
GCAAGCGCCAGACGGGTGTGTCTCTCAAGACGTTGTTGGACACAGGACGA
GGGCATCTATTGCAGAAAAAATATTTTGGGAAGGAAGAGAATACGACGGC
CAGTCAGCAGATGCTTCAGCAGGTAGCTTGTTTTTTGCACCGGGAGCTGC
CCATCCGCCTTGCCCACCGCGTACGGGACTTGGACGCCATCCCGGTGATG
CGCGAAATGCCCTCCATCCAACTCGTCAAGACCTGGTACGTCAAATCCTT
CCACGAGCTCCGGAACACCCCCACGCCCAATACTGTGGCCAAAGAGGCTG
ACTTCGCCGTTTTACTCAAAAATATCTACGAGCGACACGCCCCCGTCCTT
CTAACCATGGCTCGAGGCGCCTATGAACTGAGGCAAAAGTACGTGGCAGG
CTCCAGCGAATTTTATGACTTGGAGGTGCATAACTTCCTGGACGCATTCT
ATTTGAGCCGCATCGGGATCCGGATGCTGATCGGGCAGTACTTGGAACTC
CGCGAACCTCCCAAGCCGGACTACATTGGTCTCTGTTGCCTCCGCACTTC
CCCCCGCGATGTCGCTCTCACTGCGATCGAAGACGCCAAGTACATGTGCA
CGCGTCAGCACGGAGACGCACCCGAGGTGACCTTGCACGGTCGTCTCGAT
TTGACCTTCGCGTATGTCTCCGAGCACGTCCATTACATTTTGTTAGAACT
TTTGAAGAACAGTATGAGAGCCACGGCGGAATTTCATGGGACGGATGACA
TGCCGCCGATTCGAATAGTGATTGCGGACGGGGAGGATAATGAGGATGTG
GTGATAAAGGTGTCTGATGAGGGAGGGGGGATCCCACGCTCGCATATAAG
TAGGATCTGGAGTTATTTGTTCACGACTGCCGACCCCGAGATCCAGAGGG
GGTTTGTGGATCTGTCGCATCCGGCGTCGGATTTTGATACGGCGAGTCCT
TTGGCGGGGTTGGGGTATGGATTGCCGATTAGTCGTGCATACGCGCGGTA
TTTTGGGGGGGATTTGTCAATTATGTCTATGGAGGGGTACGGGACTGATG
CGTTTGTGCATTTGAGTCGGTTGGGGAACCATGACGAGCCTCTGCCTTAA
ATGATGGCCAGCAGCGCCGCCATGTTGGCCCGCAGTCTGGGTCGGGCGGC
GAGAAGATTAAGAGGCAGCGGTGGTGGCGATGCGCGCTCATTGTCGACGA
TGCCCGGGAGCAACAATCGTCACTCTTTTCAGCCTAATACGCAGCAGCGC
CGCCGCCCTTCCTCGAGCTTGGGCTCCCTGAACTACCCGCACGTGGCTCC
TGATCCTCTGGCAGACCCGACTGTCTTTGACGATATAAATACGTATTCCT
GCAAGCGCCAGACGGGTGTGTCTCTCAAGACGTTGTTGGACACAGGACGA
GGGCATCTATTGCAGAAAAAATATTTTGGGAAGGAAGAGAATACGACGGC
CAGTCAGCAGATGCTTCAGCAGGTAGCTTGTTTTTTGCACCGGGAGCTGC
CCATCCGCCTTGCCCACCGCGTACGGGACTTGGACGCCATCCCGGTGATG
CGCGAAATGCCCTCCATCCAACTCGTCAAGACCTGGTACGTCAAATCCTT
CCACGAGCTCCGGAACACCCCCACGCCCAATACTGTGGCCAAAGAGGCTG
ACTTCGCCGTTTTACTCAAAAATATCTACGAGCGACACGCCCCCGTCCTT
CTAACCATGGCTCGAGGCGCCTATGAACTGAGGCAAAAGTACGTGGCAGG
CTCCAGCGAATTTTATGACTTGGAGGTGCATAACTTCCTGGACGCATTCT
ATTTGAGCCGCATCGGGATCCGGATGCTGATCGGGCAGTACTTGGAACTC
CGCGAACCTCCCAAGCCGGACTACATTGGTCTCTGTTGCCTCCGCACTTC
CCCCCGCGATGTCGCTCTCACTGCGATCGAAGACGCCAAGTACATGTGCA
CGCGTCAGCACGGAGACGCACCCGAGGTGACCTTGCACGGTCGTCTCGAT
TTGACCTTCGCGTATGTCTCCGAGCACGTCCATTACATTTTGTTAGAACT
TTTGAAGAACAGTATGAGAGCCACGGCGGAATTTCATGGGACGGATGACA
TGCCGCCGATTCGAATAGTGATTGCGGACGGGGAGGATAATGAGGATGTG
GTGATAAAGGTGTCTGATGAGGGAGGGGGGATCCCACGCTCGCATATAAG
TAGGATCTGGAGTTATTTGTTCACGACTGCCGACCCCGAGATCCAGAGGG
GGTTTGTGGATCTGTCGCATCCGGCGTCGGATTTTGATACGGCGAGTCCT
TTGGCGGGGTTGGGGTATGGATTGCCGATTAGTCGTGCATACGCGCGGTA
TTTTGGGGGGGATTTGTCAATTATGTCTATGGAGGGGTACGGGACTGATG
CGTTTGTGCATTTGAGTCGGTTGGGGAACCATGACGAGCCTCTGCCTTAA
ATGATGGCCAGCAGCGCCGCCATGTTGGCCCGCAGTCTGGGTCGGGCGGC
GAGAAGATTAAGAGGCAGCGGTGGTGGCGATGCGCGCTCATTGTCGACGA
TGCCCGGGAGCAACAATCGTCACTCTTTTCAGCCTAATACGCAGCAGCGC
CGCCGCCCTTCCTCGAGCTTGGGCTCCCTGAACTACCCGCACGTGGCTCC
TGATCCTCTGGCAGACCCGACTGTCTTTGACGATATAAATACGTATTCCT
GCAAGCGCCAGACGGGTGTGTCTCTCAAGACGTTGTTGGACACAGGACGA
GGGCATCTATTGCAGAAAAAATATTTTGGGAAGGAAGAGAATACGACGGC
CAGTCAGCAGATGCTTCAGCAGGTAGCTTGTTTTTTGCACCGGGAGCTGC
CCATCCGCCTTGCCCACCGCGTACGGGACTTGGACGCCATCCCGGTGATG
CGCGAAATGCCCTCCATCCAACTCGTCAAGACCTGGTACGTCAAATCCTT
CCACGAGCTCCGGAACACCCCCACGCCCAATACTGTGGCCAAAGAGGCTG
ACTTCGCCGTTTTACTCAAAAATATCTACGAGCGACACGCCCCCGTCCTT
CTAACCATGGCTCGAGGCGCCTATGAACTGAGGCAAAAGTACGTGGCAGG
CTCCAGCGAATTTTATGACTTGGAGGTGCATAACTTCCTGGACGCATTCT
ATTTGAGCCGCATCGGGATCCGGATGCTGATCGGGCAGTACTTGGAACTC
CGCGAACCTCCCAAGCCGGACTACATTGGTCTCTGTTGCCTCCGCACTTC
CCCCCGCGATGTCGCTCTCACTGCGATCGAAGACGCCAAGTACATGTGCA
CGCGTCAGCACGGAGACGCACCCGAGGTGACCTTGCACGGTCGTCTCGAT
TTGACCTTCGCGTATGTCTCCGAGCACGTCCATTACATTTTGTTAGAACT
TTTGAAGAACAGTATGAGAGCCACGGCGGAATTTCATGGGACGGATGACA
TGCCGCCGATTCGAATAGTGATTGCGGACGGGGAGGATAATGAGGATGTG
GTGATAAAGGTGTCTGATGAGGGAGGGGGGATCCCACGCTCGCATATAAG
TAGGATCTGGAGTTATTTGTTCACGACTGCCGACCCCGAGATCCAGAGGG
GGTTTGTGGATCTGTCGCATCCGGCGTCGGATTTTGATACGGCGAGTCCT
TTGGCGGGGTTGGGGTATGGATTGCCGATTAGTCGTGCATACGCGCGGTA
TTTTGGGGGGGATTTGTCAATTATGTCTATGGAGGGGTACGGGACTGATG
CGTTTGTGCATTTGAGTCGGTTGGGGAACCATGACGAGCCTCTGCCTTAA

Synonyms

Publications