jgi.p|Nanoce1779_2|598123, mRNA_7288 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598123
Unique Name	mRNA_7288
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2233
Alignment location	scaffold_19:131992..134467 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598209
Track	FilteredModels2
ProteinId	598123

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:131992..134467 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598123	gene_7288	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598123	mRNA_7288-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7288	CDS_7288	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:131992..134467+
coding sequence from alignment at scaffold_19:131992..134467+

mRNA sequence

>mRNA_7288 ID=mRNA_7288|Name=jgi.p|Nanoce1779_2|598123|organism=Nannochloropsis oceanica|type=mRNA|length=2233bp
AACAGAACCATACAGCAGGCGGCCGCCTTGGTTCCGCTGTTGCGAACGCC
GGAGGAATGACCTTATTACTCTTGCAAAGGATAAGGCGGGGACATGCGGC
ACTGGAGACGACAGAGCCCGTCGCCAGCTCAGCCTCCTCCCTCTCCTCCT
TCTCCTTTACCCCTCGTCCAAGCCGGGCCTCCTACCACATGACCACCTTC
GTTGCTACCACGCTGATGGGGCTGCTCCTTGCCCTACAGCTGATGCCGGA
GGCCTGCGCCTGGCGCGTCCCATTCTCCCCTGCATCCTGCATGCAGTGCA
CCCCCCCCCGCACCAGTCTCAGCCGGACCACGCCCCTCTACTCCACCCTC
CCCGACCAGCAGCAGCCACCACAAGATGAAAAGGGCATCTGCAGCAGTAC
TAGCAGCAGCAGTGAGGCAGCCGTCCAGACATCTCCCTCACTAGTCCAAG
TGCAAAGCTTCAGTCCCTTCCTCGGGCGACAAAAGAGAAGACCCGGCTTA
CTCTTCGAGGAGGAAATTGACTTCTGCCTCGCTATCCCTACTTTGGAAGG
GGTAAGCGTGGGTAATAGTAATGTGGAGATTTCCAAGGTCGTTAACACTT
TCGCTAACCAAGCAGCTAAGAAGATTCTGATCGGTTTTGACTGTTGCTTT
GGGGATCTTGCCGATGCAGTCAAGGAGAGATTAAGAGCGGAGTATTTGGA
AGGTGGGGGAGAGAGAGAAGATCCGAATGGAGGAGAGTCAAGAATGGTGG
TGGAGGGGGCGTGTGGGTTTATTGATGCGGTCGCCGCCCTCTCCCCCTGC
TCCGACCTGAAGGTCAGCACTACGAAAGCAGCCCTCCTTCCCGCCTATAG
CGAAGCTTACATGCGTGTTATTGACACCCTCATCAGCAACAACTGCGAAT
TCCGGTCTATTTCTGCTTCCACCCCATCCTCGGAAGTAGGCACAACGCCC
TCAAACGACAAGGACCTGAAGATTTTGCCGCGAGATCGTGATATTTGCTT
GTCTTTATATGATACCATCACAGGCGCCCAAACCAAGACCAAAATTTTAA
ACAAAATTTCGAATCGCGTTTCCCGGACCATGCTCTATGGTGATGAGGAC
GATGTCGCAAAGCTCACAACTGAGCTAACGACGGGCAAAGCCTCTTTTGT
CGATGAGTGGTTGGACGGAGAGGCCGAGAGAGGATGTGACGAGTCCGTGT
ATTATGATTCGTTGATCTCGCATCTGACAGGAGGGTTGGAGGCTCCGGCG
CCGGCGGCGATGGGAGGGGGCTATAGTAACGCGTATCAACGCTTTATAAC
TTTGTTGGTGCAGGAACTGGGGACGCGCTCGGCATCAGTTGATCCAGAGA
TGTTTGACGCCTTTGTCCGGTGGGAGAGTACTCTAAGGAAAAATCTGACG
CAGGATATGTGGGACCCGCACCCGAAAGAACTGACTGGGCAGTGGACGCT
GATGGACAGTGGTCCTAATCCTGGAAGTGCGGCGATGGCGACATCTGGGG
GGGGTTCGGCGGGCAGTAAGAACAAAGGAAAGTTGCGCACGGCGAACTTA
GTGTTTCGACGTGACGGGACTTTGAGGGTACCGCCGGAGTTGGGCTTGGA
TGGCTCCTGGAGTTTTGAACCGGGGCCAACGCATTTGGATACGATTCGGT
TTGAGCTCCGGTTGGGGACGCCGGACAATCGCGTGCTGGCGTATACGGGG
TATGTGGATCGGGGACAGCGGATCGAGACAAGGTTTTCAAAGAGGCCGAT
CAAAATGAAGGGACGAGTAGTCTTGCGGGTTAGGGGAGAGCCGAGGTCGA
GTAGTAAGTTCACGATGGAATTGTGTAAGAAGAATATGCTACTTGAAAAC
TTGGTCGTAGGCTCCACGCGGGGCACGCTGCAAGAGTAAGTGTGACGTAA
AAAGTAGAAGTGATAGAGGGGGTCATGTAAAAAGGTATATTTTAGGTGGC
GCGCGAATCGCGAAAGCATTAGTCGTGGACTTTTCCATGGCCACTAGTAA
ACAGCCGATGCAAGCGAACAAAAGAAGGACAAAAGAACGGCGAATAATAC
TGTTCCAAAGATTGAAGAATAAATCATCCTCGACCCTCTGTCAAAGAGTT
TCTATTTTTGCCGTTATTGCTCTTTGGACTCAAGACACCCATCAGCATGA
CGAATGTAGGAACCAATCTTATTTGTACTTTAGATCAGAAACGGCCGCGT
AATAAGATCTGCTTACGCTATATAGGTACAAGC

protein sequence of jgi.p|Nanoce1779_2|598123

>mRNA_7288-protein ID=mRNA_7288-protein|Name=jgi.p|Nanoce1779_2|598123|organism=Nannochloropsis oceanica|type=polypeptide|length=611bp
MTLLLLQRIRRGHAALETTEPVASSASSLSSFSFTPRPSRASYHMTTFVA
TTLMGLLLALQLMPEACAWRVPFSPASCMQCTPPRTSLSRTTPLYSTLPD
QQQPPQDEKGICSSTSSSSEAAVQTSPSLVQVQSFSPFLGRQKRRPGLLF
EEEIDFCLAIPTLEGVSVGNSNVEISKVVNTFANQAAKKILIGFDCCFGD
LADAVKERLRAEYLEGGGEREDPNGGESRMVVEGACGFIDAVAALSPCSD
LKVSTTKAALLPAYSEAYMRVIDTLISNNCEFRSISASTPSSEVGTTPSN
DKDLKILPRDRDICLSLYDTITGAQTKTKILNKISNRVSRTMLYGDEDDV
AKLTTELTTGKASFVDEWLDGEAERGCDESVYYDSLISHLTGGLEAPAPA
AMGGGYSNAYQRFITLLVQELGTRSASVDPEMFDAFVRWESTLRKNLTQD
MWDPHPKELTGQWTLMDSGPNPGSAAMATSGGGSAGSKNKGKLRTANLVF
RRDGTLRVPPELGLDGSWSFEPGPTHLDTIRFELRLGTPDNRVLAYTGYV
DRGQRIETRFSKRPIKMKGRVVLRVRGEPRSSSKFTMELCKKNMLLENLV
VGSTRGTLQE*

mRNA from alignment at scaffold_19:131992..134467+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7288 ID=mRNA_7288|Name=jgi.p|Nanoce1779_2|598123|organism=Nannochloropsis oceanica|type=mRNA|length=2476bp|location=Sequence derived from alignment at scaffold_19:131992..134467+ (Nannochloropsis oceanica)
AACAGAACCATACAGCAGGCGGCCGCCTTGGTTCCGCTGTTGCGAACGCC
GGAGGAATGACCTTATTACTCTTGCAAAGGATAAGGCGGGGACATGCGGC
ACTGGAGACGACAGAGCCCGTCGCCAGCTCAGCCTCCTCCCTCTCCTCCT
TCTCCTTTACCCCTCGTCCAAGCCGGGCCTCCTACCACATGACCACCTTC
GTTGCTACCACGCTGATGGGGCTGCTCCTTGCCCTACAGCTGATGCCGGA
GGCCTGCGCCTGGCGCGTCCCATTCTCCCCTGCATCCTGCATGCAGTGCA
CCCCCCCCCGCACCAGTCTCAGCCGGACCACGCCCCTCTACTCCACCCTC
CCCGACCAGCAGCAGCCACCACAAGATGAAAAGGGCATCTGCAGCAGTAC
TAGCAGCAGCAGTGAGGCAGCCGTCCAGACATCTCCCTCACTAGTCCAAG
TGCAAAGCTTCAGTCCCTTCCTCGGGCGACAAAAGAGAAGACCCGGCTTA
CTCTTCGAGGAGGAAATTGACTTCTGCCTCGCTATCCCTACTTTGGAAGG
GGTAAGCGTGGGTAATAGTAATGTGGAGATTTCCAAGGTCGTTAACACTT
TCGCTAACCAAGCAGCTAAGAAGATTCTGATCGGTTTTGACTGTTGCTTT
GGGGATCTTGCCGATGCAGTCAAGGAGAGATTAAGAGCGGAGTATTTGGA
AGGTGGGGGAGAGAGAGAAGATCCGAATGGAGGAGAGTCAAGAATGGTGG
TGGAGGGGGCGTGTGGGTTTATTGATGCGGTACGTTTTGTAAAATGGGTT
GGAAGGAGGGATACGGGGGGGAAAGGAGGGAGGATTGGTAGTGGAGCTAC
TTGGTAATGGTGTCCTGTCGATTTCATTCATGGCTTTATCGTTTCTGGTC
TCGTATGGTCTGTGCTTCTATCCATATTTCACGCCTTGCATTGAATTGCA
TCTGTCTCAAGCGACCCTCCCCCTGTTATCCTCACTTCCCTTCGTCCCCA
CCATCCGTCCCTCCATCTTTAGGTCGCCGCCCTCTCCCCCTGCTCCGACC
TGAAGGTCAGCACTACGAAAGCAGCCCTCCTTCCCGCCTATAGCGAAGCT
TACATGCGTGTTATTGACACCCTCATCAGCAACAACTGCGAATTCCGGTC
TATTTCTGCTTCCACCCCATCCTCGGAAGTAGGCACAACGCCCTCAAACG
ACAAGGACCTGAAGATTTTGCCGCGAGATCGTGATATTTGCTTGTCTTTA
TATGATACCATCACAGGCGCCCAAACCAAGACCAAAATTTTAAACAAAAT
TTCGAATCGCGTTTCCCGGACCATGCTCTATGGTGATGAGGACGATGTCG
CAAAGCTCACAACTGAGCTAACGACGGGCAAAGCCTCTTTTGTCGATGAG
TGGTTGGACGGAGAGGCCGAGAGAGGATGTGACGAGTCCGTGTATTATGA
TTCGTTGATCTCGCATCTGACAGGAGGGTTGGAGGCTCCGGCGCCGGCGG
CGATGGGAGGGGGCTATAGTAACGCGTATCAACGCTTTATAACTTTGTTG
GTGCAGGAACTGGGGACGCGCTCGGCATCAGTTGATCCAGAGATGTTTGA
CGCCTTTGTCCGGTGGGAGAGTACTCTAAGGAAAAATCTGACGCAGGATA
TGTGGGACCCGCACCCGAAAGAACTGACTGGGCAGTGGACGCTGATGGAC
AGTGGTCCTAATCCTGGAAGTGCGGCGATGGCGACATCTGGGGGGGGTTC
GGCGGGCAGTAAGAACAAAGGAAAGTTGCGCACGGCGAACTTAGTGTTTC
GACGTGACGGGACTTTGAGGGTACCGCCGGAGTTGGGCTTGGATGGCTCC
TGGAGTTTTGAACCGGGGCCAACGCATTTGGATACGATTCGGTTTGAGCT
CCGGTTGGGGACGCCGGACAATCGCGTGCTGGCGTATACGGGGTATGTGG
ATCGGGGACAGCGGATCGAGACAAGGTTTTCAAAGAGGCCGATCAAAATG
AAGGGACGAGTAGTCTTGCGGGTTAGGGGAGAGCCGAGGTCGAGTAGTAA
GTTCACGATGGAATTGTGTAAGAAGAATATGCTACTTGAAAACTTGGTCG
TAGGCTCCACGCGGGGCACGCTGCAAGAGTAAGTGTGACGTAAAAAGTAG
AAGTGATAGAGGGGGTCATGTAAAAAGGTATATTTTAGGTGGCGCGCGAA
TCGCGAAAGCATTAGTCGTGGACTTTTCCATGGCCACTAGTAAACAGCCG
ATGCAAGCGAACAAAAGAAGGACAAAAGAACGGCGAATAATACTGTTCCA
AAGATTGAAGAATAAATCATCCTCGACCCTCTGTCAAAGAGTTTCTATTT
TTGCCGTTATTGCTCTTTGGACTCAAGACACCCATCAGCATGACGAATGT
AGGAACCAATCTTATTTGTACTTTAGATCAGAAACGGCCGCGTAATAAGA
TCTGCTTACGCTATATAGGTACAAGC

Coding sequence (CDS) from alignment at scaffold_19:131992..134467+

>mRNA_7288 ID=mRNA_7288|Name=jgi.p|Nanoce1779_2|598123|organism=Nannochloropsis oceanica|type=CDS|length=3666bp|location=Sequence derived from alignment at scaffold_19:131992..134467+ (Nannochloropsis oceanica)
ATGACCTTATTACTCTTGCAAAGGATAAGGCGGGGACATGCGGCACTGGA
GACGACAGAGCCCGTCGCCAGCTCAGCCTCCTCCCTCTCCTCCTTCTCCT
TTACCCCTCGTCCAAGCCGGGCCTCCTACCACATGACCACCTTCGTTGCT
ACCACGCTGATGGGGCTGCTCCTTGCCCTACAGCTGATGCCGGAGGCCTG
CGCCTGGCGCGTCCCATTCTCCCCTGCATCCTGCATGCAGTGCACCCCCC
CCCGCACCAGTCTCAGCCGGACCACGCCCCTCTACTCCACCCTCCCCGAC
CAGCAGCAGCCACCACAAGATGAAAAGGGCATCTGCAGCAGTACTAGCAG
CAGCAGTGAGGCAGCCGTCCAGACATCTCCCTCACTAGTCCAAGTGCAAA
GCTTCAGTCCCTTCCTCGGGCGACAAAAGAGAAGACCCGGCTTACTCTTC
GAGGAGGAAATTGACTTCTGCCTCGCTATCCCTACTTTGGAAGGGGTAAG
CGTGGGTAATAGTAATGTGGAGATTTCCAAGGTCGTTAACACTTTCGCTA
ACCAAGCAGCTAAGAAGATTCTGATCGGTTTTGACTGTTGCTTTGGGGAT
CTTGCCGATGCAGTCAAGGAGAGATTAAGAGCGGAGTATTTGGAAGGTGG
GGGAGAGAGAGAAGATCCGAATGGAGGAGAGTCAAGAATGGTGGTGGAGG
GGGCGTGTGGGTTTATTGATGCGGTCGCCGCCCTCTCCCCCTGCTCCGAC
CTGAAGGTCAGCACTACGAAAGCAGCCCTCCTTCCCGCCTATAGCGAAGC
TTACATGCGTGTTATTGACACCCTCATCAGCAACAACTGCGAATTCCGGT
CTATTTCTGCTTCCACCCCATCCTCGGAAGTAGGCACAACGCCCTCAAAC
GACAAGGACCTGAAGATTTTGCCGCGAGATCGTGATATTTGCTTGTCTTT
ATATGATACCATCACAGGCGCCCAAACCAAGACCAAAATTTTAAACAAAA
TTTCGAATCGCGTTTCCCGGACCATGCTCTATGGTGATGAGGACGATGTC
GCAAAGCTCACAACTGAGCTAACGACGGGCAAAGCCTCTTTTGTCGATGA
GTGGTTGGACGGAGAGGCCGAGAGAGGATGTGACGAGTCCGTGTATTATG
ATTCGTTGATCTCGCATCTGACAGGAGGGTTGGAGGCTCCGGCGCCGGCG
GCGATGGGAGGGGGCTATAGTAACGCGTATCAACGCTTTATAACTTTGTT
GGTGCAGGAACTGGGGACGCGCTCGGCATCAGTTGATCCAGAGATGTTTG
ACGCCTTTGTCCGGTGGGAGAGTACTCTAAGGAAAAATCTGACGCAGGAT
ATGTGGGACCCGCACCCGAAAGAACTGACTGGGCAGTGGACGCTGATGGA
CAGTGGTCCTAATCCTGGAAGTGCGGCGATGGCGACATCTGGGGGGGGTT
CGGCGGGCAGTAAGAACAAAGGAAAGTTGCGCACGGCGAACTTAGTGTTT
CGACGTGACGGGACTTTGAGGGTACCGCCGGAGTTGGGCTTGGATGGCTC
CTGGAGTTTTGAACCGGGGCCAACGCATTTGGATACGATTCGGTTTGAGC
TCCGGTTGGGGACGCCGGACAATCGCGTGCTGGCGTATACGGGGTATGTG
GATCGGGGACAGCGGATCGAGACAAGGTTTTCAAAGAGGCCGATCAAAAT
GAAGGGACGAGTAGTCTTGCGGGTTAGGGGAGAGCCGAGGTCGAGTAGTA
AGTTCACGATGGAATTGTGTAAGAAGAATATGCTACTTGAAAACTTGGTC
GTAGGCTCCACGCGGGGCACGCTGCAAGAGTAAATGACCTTATTACTCTT
GCAAAGGATAAGGCGGGGACATGCGGCACTGGAGACGACAGAGCCCGTCG
CCAGCTCAGCCTCCTCCCTCTCCTCCTTCTCCTTTACCCCTCGTCCAAGC
CGGGCCTCCTACCACATGACCACCTTCGTTGCTACCACGCTGATGGGGCT
GCTCCTTGCCCTACAGCTGATGCCGGAGGCCTGCGCCTGGCGCGTCCCAT
TCTCCCCTGCATCCTGCATGCAGTGCACCCCCCCCCGCACCAGTCTCAGC
CGGACCACGCCCCTCTACTCCACCCTCCCCGACCAGCAGCAGCCACCACA
AGATGAAAAGGGCATCTGCAGCAGTACTAGCAGCAGCAGTGAGGCAGCCG
TCCAGACATCTCCCTCACTAGTCCAAGTGCAAAGCTTCAGTCCCTTCCTC
GGGCGACAAAAGAGAAGACCCGGCTTACTCTTCGAGGAGGAAATTGACTT
CTGCCTCGCTATCCCTACTTTGGAAGGGGTAAGCGTGGGTAATAGTAATG
TGGAGATTTCCAAGGTCGTTAACACTTTCGCTAACCAAGCAGCTAAGAAG
ATTCTGATCGGTTTTGACTGTTGCTTTGGGGATCTTGCCGATGCAGTCAA
GGAGAGATTAAGAGCGGAGTATTTGGAAGGTGGGGGAGAGAGAGAAGATC
CGAATGGAGGAGAGTCAAGAATGGTGGTGGAGGGGGCGTGTGGGTTTATT
GATGCGGTCGCCGCCCTCTCCCCCTGCTCCGACCTGAAGGTCAGCACTAC
GAAAGCAGCCCTCCTTCCCGCCTATAGCGAAGCTTACATGCGTGTTATTG
ACACCCTCATCAGCAACAACTGCGAATTCCGGTCTATTTCTGCTTCCACC
CCATCCTCGGAAGTAGGCACAACGCCCTCAAACGACAAGGACCTGAAGAT
TTTGCCGCGAGATCGTGATATTTGCTTGTCTTTATATGATACCATCACAG
GCGCCCAAACCAAGACCAAAATTTTAAACAAAATTTCGAATCGCGTTTCC
CGGACCATGCTCTATGGTGATGAGGACGATGTCGCAAAGCTCACAACTGA
GCTAACGACGGGCAAAGCCTCTTTTGTCGATGAGTGGTTGGACGGAGAGG
CCGAGAGAGGATGTGACGAGTCCGTGTATTATGATTCGTTGATCTCGCAT
CTGACAGGAGGGTTGGAGGCTCCGGCGCCGGCGGCGATGGGAGGGGGCTA
TAGTAACGCGTATCAACGCTTTATAACTTTGTTGGTGCAGGAACTGGGGA
CGCGCTCGGCATCAGTTGATCCAGAGATGTTTGACGCCTTTGTCCGGTGG
GAGAGTACTCTAAGGAAAAATCTGACGCAGGATATGTGGGACCCGCACCC
GAAAGAACTGACTGGGCAGTGGACGCTGATGGACAGTGGTCCTAATCCTG
GAAGTGCGGCGATGGCGACATCTGGGGGGGGTTCGGCGGGCAGTAAGAAC
AAAGGAAAGTTGCGCACGGCGAACTTAGTGTTTCGACGTGACGGGACTTT
GAGGGTACCGCCGGAGTTGGGCTTGGATGGCTCCTGGAGTTTTGAACCGG
GGCCAACGCATTTGGATACGATTCGGTTTGAGCTCCGGTTGGGGACGCCG
GACAATCGCGTGCTGGCGTATACGGGGTATGTGGATCGGGGACAGCGGAT
CGAGACAAGGTTTTCAAAGAGGCCGATCAAAATGAAGGGACGAGTAGTCT
TGCGGGTTAGGGGAGAGCCGAGGTCGAGTAGTAAGTTCACGATGGAATTG
TGTAAGAAGAATATGCTACTTGAAAACTTGGTCGTAGGCTCCACGCGGGG
CACGCTGCAAGAGTAA

Synonyms

Publications