jgi.p|Nanoce1779_2|558409, mRNA_7287 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|558409
Unique Name	mRNA_7287
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1334
Alignment location	scaffold_19:130140..131987 -

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Properties


Property Name	Value
TranscriptId	558495
Track	FilteredModels2
ProteinId	558409

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:130140..131987 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558409	gene_7287	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558409	mRNA_7287-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7287	CDS_7287	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:130140..131987-
coding sequence from alignment at scaffold_19:130140..131987-

mRNA sequence

>mRNA_7287 ID=mRNA_7287|Name=jgi.p|Nanoce1779_2|558409|organism=Nannochloropsis oceanica|type=mRNA|length=1334bp
GGAGGGGTTCGTACAATTGGAAGGAGAAAGAGTGTATGCATCGCAAAGAT
CAGACAAGTCGTGTGCCAAGGGCTCGTGCGGGCCGCCGATGATGACAAAC
GTATCAGGTTGATGGTGCCACCTATGGGTCTATTGAGAGTCACTTTACAG
TAGAGAAAGCATGCGCATCGCTCCGCGTAATCGAAGGAAATCTACAATTT
TGTGCTTAGTCTGTCCAAGCAGGAAAATCGTGCTGAAGCACGGCGTACGG
GGCCAAAAAAACGAAGATGATCGCCGCCGTAGTTTTTTTCTACAGCCATG
GTTAAGCACAGATAGCTCATCAAGACCACCCATGGGTACGCCCCGTCACT
AAAAATATAGCTTGGCCTTGGTGTTGGGGCTGGAGTGGGACCGTAATGTT
GTTACCCACATGGTGTACAGCCCATCCAATCACAAGTCTCTCGACCACCC
ACCATTCCTCTCTTTGCTTCATCAGAAAAAACGCACCATCAGATTTTGCC
CAAGTTACCCGCATAAAAAAGGAGGAGCACGAACATTAAAAACACGCAAC
GCTTGAGAAGGCGGATACTGGAGCAGACATGGCGGTGGACGGAAGTGTGG
AGGGTCCCGGTGTCACGCCCTTGCAGAGGGGGTACACGTTTTACTACATT
AACAAGCAGAAAGCCCCGGCTGAGAACTATGAGGATTCGATCAAGCGAAT
TGCTTCCTTTCGGACCGCCGAGGGCTTTTGGCGTGTTTACAACCATATTT
TGAGGCCACACCAGCTGAGGGAAGGCGGGGGGGAGGAGTATCAGCTGTTC
GTGGAAGGAGTGAAGCCGACGTGGGAAGACCCTCAGAATGCAAAAGGCGG
AAAATTAGTTATTAAATGCCCGCCTGGTTTGACCTCGAGATACTGGGAAG
AGTTGCTCTTGGCCTTTGTCGGCGAGCAGATCGATGGCGGGGAGGACGAA
GTTTGCGGCGTCATCGTGAGTGTGCGCTACAACGGGGACGTGATTCAAAT
ATGGAACAGACACGCGGACAACAAAGAATTCAAAAATAGGTTGGTTAGAA
GACTGAAAAGTCTGTGGGAGCTCCCGCCCTTCGTCGCCATGGACTACAAA
CGTCACTTTCCCGGGCCTGTGCCGGAGGGAGGGAGGGAGGGAGGGGGGAA
TGCTCATGTGGGACTTGGGGTAGGGGGGGGGGAGGATGGAGGGAAGAGAG
CGGCATGGAGGGCGGCGAGGATTTTTGGGCAAACGGGCGGTGGAGGAGGA
GCGAATGGCGGGGGTAGAGAGGGAGCGAGGGAGAAGTTTGGAGGGAGGGA
GAGGGGGGGGGGGGGGCGGAGGCGCTTTTGTTGA

protein sequence of jgi.p|Nanoce1779_2|558409

>mRNA_7287-protein ID=mRNA_7287-protein|Name=jgi.p|Nanoce1779_2|558409|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MAVDGSVEGPGVTPLQRGYTFYYINKQKAPAENYEDSIKRIASFRTAEGF
WRVYNHILRPHQLREGGGEEYQLFVEGVKPTWEDPQNAKGGKLVIKCPPG
LTSRYWEELLLAFVGEQIDGGEDEVCGVIVSVRYNGDVIQIWNRHADNKE
FKNRLVRRLKSLWELPPFVAMDYKRHFPGPVPEGGREGGGNAHVGLGVGG
GEDGGKRAAWRAARIFGQTGGGGGANGGGREGAREKFGGRERGGGGRRRF
C*

mRNA from alignment at scaffold_19:130140..131987-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7287 ID=mRNA_7287|Name=jgi.p|Nanoce1779_2|558409|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp|location=Sequence derived from alignment at scaffold_19:130140..131987- (Nannochloropsis oceanica)
GGAGGGGTTCGTACAATTGGAAGGAGAAAGAGTGTATGCATCGCAAAGAT
CAGACAAGTCGTGTGCCAAGGGCTCGTGCGGGCCGCCGATGATGACAAAC
GTATCAGGTTGATGGTGCCACCTATGGGTCTATTGAGAGTCACTTTACAG
TAGAGAAAGCATGCGCATCGCTCCGCGTAATCGAAGGAAATCTACAATTT
TGTGCTTAGTCTGTCCAAGCAGGAAAATCGTGCTGAAGCACGGCGTACGG
GGCCAAAAAAACGAAGATGATCGCCGCCGTAGTTTTTTTCTACAGCCATG
GTTAAGCACAGATAGCTCATCAAGACCACCCATGGGTACGCCCCGTCACT
AAAAATATAGCTTGGCCTTGGTGTTGGGGCTGGAGTGGGACCGTAATGTT
GTTACCCACATGGTGTACAGCCCATCCAATCACAAGTCTCTCGACCACCC
ACCATTCCTCTCTTTGCTTCATCAGAAAAAACGCACCATCAGATTTTGCC
CAAGTTACCCGCATAAAAAAGGAGGAGCACGAACATTAAAAACACGCAAC
GCTTGAGAAGGCGGATACTGGAGCAGACATGGCGGTGGACGGAAGTGTGG
AGGGTCCCGGTGTCACGCCCTTGCAGGTAAGCTCTAGCCTGCCCACTCTT
TCTTCTCACCCACCCACCCCATTCTTGTTAAGCACGGCTCATGACCTTCC
GGACATTTCCGCATATTTCGCTTACATTCTCTTCCCCCCTCATCCTTGCC
TTGCTCACACCTAGAGGGGGTACACGTTTTACTACATTAACAAGCAGAAA
GCCCCGGCTGAGGTAAGAAAAGCGGAGAGGAGACTGAGGCGGGGAGGGAG
GGAAGAAAGGAGAGTCTGAGCGGGTATCAGTATTGATGTGATTTATGTAA
AGAGAGAGGGGAAGTGAATGGGTGTGGTGTTCTGTTTTTGGCATGACTGG
AAGATTTGATGACATTCACTTTAATCACCCCTTTTCCCTCCTTCCCCACT
GCGCTCTTTCCCTCTCTTCCTCCCTCTCCCTCTCTCCATGCCTTTCTCCT
TCCACAGAACTATGAGGATTCGATCAAGCGAATTGCTTCCTTTCGGACCG
CCGAGGGCTTTTGGCGTGTTTACAACCATATTTTGAGGCCACACCAGCTG
AGGGAAGGCGGGGGGGAGGAGTATCAGCTGTTCGTGGAAGGAGTGAAGCC
GACGTGGGAAGACCCTCAGAATGCAAAAGGCGGAAAATTAGTTATTAAAT
GCCCGCCTGGTTTGACCTCGAGGTAGGAGGGAGGGAGGGAGGGTGGTGGA
GAGTACGTATTCGATCAGGCATCTTGGCAACAGATGAGATGAGACTCATT
TAGACATCGACGTATCCTCTCTCTCTCCCTCTCTCCCTCCTTTCTTGCCT
TAGATACTGGGAAGAGTTGCTCTTGGCCTTTGTCGGCGAGCAGATCGATG
GCGGGGAGGACGAAGTTTGCGGCGTCATCGTGAGTGTGCGCTACAACGGG
GACGTGATTCAAATATGGAACAGACACGCGGACAACAAAGAATTCAAAAA
TAGGTTGGTTAGAAGACTGAAAAGTCTGTGGGAGCTCCCGCCCTTCGTCG
CCATGGACTACAAACGTCACTTTCCCGGGCCTGTGCCGGAGGGAGGGAGG
GAGGGAGGGGGGAATGCTCATGTGGGACTTGGGGTAGGGGGGGGGGAGGA
TGGAGGGAAGAGAGCGGCATGGAGGGCGGCGAGGATTTTTGGGCAAACGG
GCGGTGGAGGAGGAGCGAATGGCGGGGGTAGAGAGGGAGCGAGGGAGAAG
TTTGGAGGGAGGGAGAGGGGGGGGGGGGGGCGGAGGCGCTTTTGTTGA

Coding sequence (CDS) from alignment at scaffold_19:130140..131987-

>mRNA_7287 ID=mRNA_7287|Name=jgi.p|Nanoce1779_2|558409|organism=Nannochloropsis oceanica|type=CDS|length=3024bp|location=Sequence derived from alignment at scaffold_19:130140..131987- (Nannochloropsis oceanica)
ATACTGGGAAGAGTTGCTCTTGGCCTTTGTCGGCGAGCAGATCGATGGCG
GGGAGGACGAAGTTTGCGGCGTCATCGTGAGTGTGCGCTACAACGGGGAC
GTGATTCAAATATGGAACAGACACGCGGACAACAAAGAATTCAAAAATAG
GTTGGTTAGAAGACTGAAAAGTCTGTGGGAGCTCCCGCCCTTCGTCGCCA
TGGACTACAAACGTCACTTTCCCGGGCCTGTGCCGGAGGGAGGGAGGGAG
GGAGGGGGGAATGCTCATGTGGGACTTGGGGTAGGGGGGGGGGAGGATGG
AGGGAAGAGAGCGGCATGGAGGGCGGCGAGGATTTTTGGGCAAACGGGCG
GTGGAGGAGGAGCGAATGGCGGGGGTAGAGAGGGAGCGAGGGAGAAGTTT
GGAGGGAGGGAGAGGGGGGGGGGGGGGCGGAGGCGCTTTTGTTGAAACTA
TGAGGATTCGATCAAGCGAATTGCTTCCTTTCGGACCGCCGAGGGCTTTT
GGCGTGTTTACAACCATATTTTGAGGCCACACCAGCTGAGGGAAGGCGGG
GGGGAGGAGTATCAGCTGTTCGTGGAAGGAGTGAAGCCGACGTGGGAAGA
CCCTCAGAATGCAAAAGGCGGAAAATTAGTTATTAAATGCCCGCCTGGTT
TGACCTCGAGAGGGGGTACACGTTTTACTACATTAACAAGCAGAAAGCCC
CGGCTGAGATGGCGGTGGACGGAAGTGTGGAGGGTCCCGGTGTCACGCCC
TTGCAGATACTGGGAAGAGTTGCTCTTGGCCTTTGTCGGCGAGCAGATCG
ATGGCGGGGAGGACGAAGTTTGCGGCGTCATCGTGAGTGTGCGCTACAAC
GGGGACGTGATTCAAATATGGAACAGACACGCGGACAACAAAGAATTCAA
AAATAGGTTGGTTAGAAGACTGAAAAGTCTGTGGGAGCTCCCGCCCTTCG
TCGCCATGGACTACAAACGTCACTTTCCCGGGCCTGTGCCGGAGGGAGGG
AGGGAGGGAGGGGGGAATGCTCATGTGGGACTTGGGGTAGGGGGGGGGGA
GGATGGAGGGAAGAGAGCGGCATGGAGGGCGGCGAGGATTTTTGGGCAAA
CGGGCGGTGGAGGAGGAGCGAATGGCGGGGGTAGAGAGGGAGCGAGGGAG
AAGTTTGGAGGGAGGGAGAGGGGGGGGGGGGGGCGGAGGCGCTTTTGTTG
AAACTATGAGGATTCGATCAAGCGAATTGCTTCCTTTCGGACCGCCGAGG
GCTTTTGGCGTGTTTACAACCATATTTTGAGGCCACACCAGCTGAGGGAA
GGCGGGGGGGAGGAGTATCAGCTGTTCGTGGAAGGAGTGAAGCCGACGTG
GGAAGACCCTCAGAATGCAAAAGGCGGAAAATTAGTTATTAAATGCCCGC
CTGGTTTGACCTCGAGAGGGGGTACACGTTTTACTACATTAACAAGCAGA
AAGCCCCGGCTGAGATGGCGGTGGACGGAAGTGTGGAGGGTCCCGGTGTC
ACGCCCTTGCAGATACTGGGAAGAGTTGCTCTTGGCCTTTGTCGGCGAGC
AGATCGATGGCGGGGAGGACGAAGTTTGCGGCGTCATCGTGAGTGTGCGC
TACAACGGGGACGTGATTCAAATATGGAACAGACACGCGGACAACAAAGA
ATTCAAAAATAGGTTGGTTAGAAGACTGAAAAGTCTGTGGGAGCTCCCGC
CCTTCGTCGCCATGGACTACAAACGTCACTTTCCCGGGCCTGTGCCGGAG
GGAGGGAGGGAGGGAGGGGGGAATGCTCATGTGGGACTTGGGGTAGGGGG
GGGGGAGGATGGAGGGAAGAGAGCGGCATGGAGGGCGGCGAGGATTTTTG
GGCAAACGGGCGGTGGAGGAGGAGCGAATGGCGGGGGTAGAGAGGGAGCG
AGGGAGAAGTTTGGAGGGAGGGAGAGGGGGGGGGGGGGGCGGAGGCGCTT
TTGTTGAAACTATGAGGATTCGATCAAGCGAATTGCTTCCTTTCGGACCG
CCGAGGGCTTTTGGCGTGTTTACAACCATATTTTGAGGCCACACCAGCTG
AGGGAAGGCGGGGGGGAGGAGTATCAGCTGTTCGTGGAAGGAGTGAAGCC
GACGTGGGAAGACCCTCAGAATGCAAAAGGCGGAAAATTAGTTATTAAAT
GCCCGCCTGGTTTGACCTCGAGAGGGGGTACACGTTTTACTACATTAACA
AGCAGAAAGCCCCGGCTGAGATGGCGGTGGACGGAAGTGTGGAGGGTCCC
GGTGTCACGCCCTTGCAGATACTGGGAAGAGTTGCTCTTGGCCTTTGTCG
GCGAGCAGATCGATGGCGGGGAGGACGAAGTTTGCGGCGTCATCGTGAGT
GTGCGCTACAACGGGGACGTGATTCAAATATGGAACAGACACGCGGACAA
CAAAGAATTCAAAAATAGGTTGGTTAGAAGACTGAAAAGTCTGTGGGAGC
TCCCGCCCTTCGTCGCCATGGACTACAAACGTCACTTTCCCGGGCCTGTG
CCGGAGGGAGGGAGGGAGGGAGGGGGGAATGCTCATGTGGGACTTGGGGT
AGGGGGGGGGGAGGATGGAGGGAAGAGAGCGGCATGGAGGGCGGCGAGGA
TTTTTGGGCAAACGGGCGGTGGAGGAGGAGCGAATGGCGGGGGTAGAGAG
GGAGCGAGGGAGAAGTTTGGAGGGAGGGAGAGGGGGGGGGGGGGGCGGAG
GCGCTTTTGTTGAAACTATGAGGATTCGATCAAGCGAATTGCTTCCTTTC
GGACCGCCGAGGGCTTTTGGCGTGTTTACAACCATATTTTGAGGCCACAC
CAGCTGAGGGAAGGCGGGGGGGAGGAGTATCAGCTGTTCGTGGAAGGAGT
GAAGCCGACGTGGGAAGACCCTCAGAATGCAAAAGGCGGAAAATTAGTTA
TTAAATGCCCGCCTGGTTTGACCTCGAGAGGGGGTACACGTTTTACTACA
TTAACAAGCAGAAAGCCCCGGCTGAGATGGCGGTGGACGGAAGTGTGGAG
GGTCCCGGTGTCACGCCCTTGCAG

Synonyms

Publications