jgi.p|Nanoce1779_2|598117, mRNA_7286 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598117
Unique Name	mRNA_7286
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1508
Alignment location	scaffold_19:126527..128235 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598203
Track	FilteredModels2
ProteinId	598117

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:126527..128235 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598117	gene_7286	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598117	mRNA_7286-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7286	CDS_7286	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:126527..128235+
coding sequence from alignment at scaffold_19:126527..128235+

mRNA sequence

>mRNA_7286 ID=mRNA_7286|Name=jgi.p|Nanoce1779_2|598117|organism=Nannochloropsis oceanica|type=mRNA|length=1508bp
TAGAACAAAGCAAATTGTGCGGGTTCTCGAGTGGGAGCGCCGCATGTCCG
ACCTACCAAAGAAATGTTTTTGTGTTTTTGTGCATAGAACCACTTCGGAA
ACGCGTGGTATGTGGATGATGCGCTGTGCGGGTTTGGTCGGCCCGGGTGT
GATTTGTTTGATGAAAGCGTGACTGAGGCGTCTTATGCCGAATGATCAAG
GCCGTTGCCGCTTGCTTCACATACATCTAGTCCTCTCTGTGCCTCCAGCA
AACAAACTTGACACTCGAGCTAAACGCACCTCACATCACCTCCGTCGTCT
TTCTTTCCGCACAGAATCCATCATAGGAAGCGCCTTAAACCATACGAGCA
CGGGAACCAACATACCAGAATACCCACTCTTGCCTCCCAAGTTTTCTTGT
CTTCCCATTCTACCGGCACCACATTACACCCTATTAGCAGCAGTCAACCG
AGCCACCGGGCTACCATGTCGGGCGACTCGAAGTGGCAGATTTTCATCGG
GAATGTAAGCAGCTCCACCACGGATGAGAGATTGCGCCAGGTCTTCTCCA
CGGTGGGGCACGTGGTGAATGTCCGCGTCATGACTGACCGCGGGGACCCT
AAGAAAGGTTACGCCTTTGTGGAATATGACAACCCCGACACGGCACTTAC
AGCCATCCAAAACCTGGGCAATGTCGAAGTGGATGGGCGGCGACTGCGTG
TCGGCTTCAGCAACAACAGCGGATTGGAAGCGATAGCAAAGCAACGCGGA
CTTACCATAACGCCTAACGGTGGGGTGACAGGCAAAAATCTCGAAGGGGT
ACTCGCTAATTTCCCGTTGTCGGATATGTACGACATGATTGCGCATCTTA
AAGAAGTGGCCGAGACCAAACCTGAAGAACTTCGCCTCCTCCTCATCTCG
CACCCCCAAATCGCGGAAGCCATCGTCCACATGCAAGTCAAGATCGGCAT
GATTAAGCCCCTGACTCGTGCCTCGGATCAGCAACCTTACCAGCAACAAC
AGCATCAACAACAGCAGCAACAACAACCACTTCAACTGCAACCACCGGTA
CATCTAGGTGCCTTTGGCCATCAGCAGCAACAACAACAACAACAACAACA
ACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCACATTG
GTGGGCTTGCGGCAGCTGGTGGATACTACCAAGCGCAGCCCCCCTCTCAT
TTTACTCCTCAGCAAGCGGGAGGGTGGAGCGGACAGATGCCCCCCTTGCC
ACCGCCTGTGCCATTCGACCCTTCTGCAGCTGCGGGTGCTGCTGGGGGTG
GTGGAGGGGGTTTAGGCGCATTGGGAGCTCTGCTTGCGGGCGGGAATCAG
GCCATGGCGCAAGAAACGTTGCGGCAGGTGATGAGCATGACGCCGGAGCA
ATTGGCTGGAATGGAGCCAGGGCAGAGGCAGCTGATGATGGAATTGCAGC
AGGCGGTATTGATGCAGACGCAGCAGGCTGGAGGGATGAGGTAGAGGGGA
AGGAAAGA

protein sequence of jgi.p|Nanoce1779_2|598117

>mRNA_7286-protein ID=mRNA_7286-protein|Name=jgi.p|Nanoce1779_2|598117|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MSGDSKWQIFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPKKGYA
FVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTITP
NGGVTGKNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIA
EAIVHMQVKIGMIKPLTRASDQQPYQQQQHQQQQQQQPLQLQPPVHLGAF
GHQQQQQQQQQQQQQQQQQQQQQQQPHIGGLAAAGGYYQAQPPSHFTPQQ
AGGWSGQMPPLPPPVPFDPSAAAGAAGGGGGGLGALGALLAGGNQAMAQE
TLRQVMSMTPEQLAGMEPGQRQLMMELQQAVLMQTQQAGGMR*

mRNA from alignment at scaffold_19:126527..128235+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7286 ID=mRNA_7286|Name=jgi.p|Nanoce1779_2|598117|organism=Nannochloropsis oceanica|type=mRNA|length=1709bp|location=Sequence derived from alignment at scaffold_19:126527..128235+ (Nannochloropsis oceanica)
TAGAACAAAGCAAATTGTGCGGGTTCTCGAGTGGGAGCGCCGCATGTCCG
ACCTACCAAAGAAATGTTTTTGTGTTTTTGTGCATAGAACCACTTCGGAA
ACGCGTGGTATGTGGATGATGCGCTGTGCGGGTTTGGTCGGCCCGGGTGT
GATTTGTTTGATGAAAGCGTGACTGAGGCGTCTTATGCCGAATGATCAAG
GCCGTTGCCGCTTGCTTCACATACATCTAGTCCTCTCTGTGCCTCCAGCA
AACAAACTTGACACTCGAGCTAAACGCACCTCACATCACCTCCGTCGTCT
TTCTTTCCGCACAGAATCCATCATAGGAAGCGCCTTAAACCATACGAGCA
CGGGAACCAACATACCAGAATACCCACTCTTGCCTCCCAAGTTTTCTTGT
CTTCCCATTCTACCGGCACCACATTACACCCTATTAGCAGCAGTCAACCG
AGCCACCGGGCTACCATGTCGGGCGACTCGAAGTGGCAGATTTTCATCGG
GAATGTAAGCAGCTCCACCACGGATGAGAGATTGCGCCAGGTCTTCTCCA
CGGTGGGGCACGTGGTGAATGTCCGCGTCATGACTGACCGCGGGGACCCT
AAGAAAGGTGAGGACTCACTCACCACAAGCACACAAGCACACAAGCACAC
AAGCACACAAGCACATATAATACGCGGCGCATGCATGTTAGCCTCCATGC
TTATACATCTTACTGTCCGCCACTACAACCTTCTCTGGGCCCGCCTCGTG
ATTCCTCGCCACCGACTCACGCTTCCCGCTCCTCCCTCTCTTCCTCCTTC
TCAAACAGGTTACGCCTTTGTGGAATATGACAACCCCGACACGGCACTTA
CAGCCATCCAAAACCTGGGCAATGTCGAAGTGGATGGGCGGCGACTGCGT
GTCGGCTTCAGCAACAACAGCGGATTGGAAGCGATAGCAAAGCAACGCGG
ACTTACCATAACGCCTAACGGTGGGGTGACAGGCAAAAATCTCGAAGGGG
TACTCGCTAATTTCCCGTTGTCGGATATGTACGACATGATTGCGCATCTT
AAAGAAGTGGCCGAGACCAAACCTGAAGAACTTCGCCTCCTCCTCATCTC
GCACCCCCAAATCGCGGAAGCCATCGTCCACATGCAAGTCAAGATCGGCA
TGATTAAGCCCCTGACTCGTGCCTCGGATCAGCAACCTTACCAGCAACAA
CAGCATCAACAACAGCAGCAACAACAACCACTTCAACTGCAACCACCGGT
ACATCTAGGTGCCTTTGGCCATCAGCAGCAACAACAACAACAACAACAAC
AACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCACATT
GGTGGGCTTGCGGCAGCTGGTGGATACTACCAAGCGCAGCCCCCCTCTCA
TTTTACTCCTCAGCAAGCGGGAGGGTGGAGCGGACAGATGCCCCCCTTGC
CACCGCCTGTGCCATTCGACCCTTCTGCAGCTGCGGGTGCTGCTGGGGGT
GGTGGAGGGGGTTTAGGCGCATTGGGAGCTCTGCTTGCGGGCGGGAATCA
GGCCATGGCGCAAGAAACGTTGCGGCAGGTGATGAGCATGACGCCGGAGC
AATTGGCTGGAATGGAGCCAGGGCAGAGGCAGCTGATGATGGAATTGCAG
CAGGCGGTATTGATGCAGACGCAGCAGGCTGGAGGGATGAGGTAGAGGGG
AAGGAAAGA

Coding sequence (CDS) from alignment at scaffold_19:126527..128235+

>mRNA_7286 ID=mRNA_7286|Name=jgi.p|Nanoce1779_2|598117|organism=Nannochloropsis oceanica|type=CDS|length=2058bp|location=Sequence derived from alignment at scaffold_19:126527..128235+ (Nannochloropsis oceanica)
ATGTCGGGCGACTCGAAGTGGCAGATTTTCATCGGGAATGTAAGCAGCTC
CACCACGGATGAGAGATTGCGCCAGGTCTTCTCCACGGTGGGGCACGTGG
TGAATGTCCGCGTCATGACTGACCGCGGGGACCCTAAGAAAGGTTACGCC
TTTGTGGAATATGACAACCCCGACACGGCACTTACAGCCATCCAAAACCT
GGGCAATGTCGAAGTGGATGGGCGGCGACTGCGTGTCGGCTTCAGCAACA
ACAGCGGATTGGAAGCGATAGCAAAGCAACGCGGACTTACCATAACGCCT
AACGGTGGGGTGACAGGCAAAAATCTCGAAGGGGTACTCGCTAATTTCCC
GTTGTCGGATATGTACGACATGATTGCGCATCTTAAAGAAGTGGCCGAGA
CCAAACCTGAAGAACTTCGCCTCCTCCTCATCTCGCACCCCCAAATCGCG
GAAGCCATCGTCCACATGCAAGTCAAGATCGGCATGATTAAGCCCCTGAC
TCGTGCCTCGGATCAGCAACCTTACCAGCAACAACAGCATCAACAACAGC
AGCAACAACAACCACTTCAACTGCAACCACCGGTACATCTAGGTGCCTTT
GGCCATCAGCAGCAACAACAACAACAACAACAACAACAACAACAACAACA
GCAGCAGCAGCAGCAGCAGCAGCAGCCGCACATTGGTGGGCTTGCGGCAG
CTGGTGGATACTACCAAGCGCAGCCCCCCTCTCATTTTACTCCTCAGCAA
GCGGGAGGGTGGAGCGGACAGATGCCCCCCTTGCCACCGCCTGTGCCATT
CGACCCTTCTGCAGCTGCGGGTGCTGCTGGGGGTGGTGGAGGGGGTTTAG
GCGCATTGGGAGCTCTGCTTGCGGGCGGGAATCAGGCCATGGCGCAAGAA
ACGTTGCGGCAGGTGATGAGCATGACGCCGGAGCAATTGGCTGGAATGGA
GCCAGGGCAGAGGCAGCTGATGATGGAATTGCAGCAGGCGGTATTGATGC
AGACGCAGCAGGCTGGAGGGATGAGGTAGATGTCGGGCGACTCGAAGTGG
CAGATTTTCATCGGGAATGTAAGCAGCTCCACCACGGATGAGAGATTGCG
CCAGGTCTTCTCCACGGTGGGGCACGTGGTGAATGTCCGCGTCATGACTG
ACCGCGGGGACCCTAAGAAAGGTTACGCCTTTGTGGAATATGACAACCCC
GACACGGCACTTACAGCCATCCAAAACCTGGGCAATGTCGAAGTGGATGG
GCGGCGACTGCGTGTCGGCTTCAGCAACAACAGCGGATTGGAAGCGATAG
CAAAGCAACGCGGACTTACCATAACGCCTAACGGTGGGGTGACAGGCAAA
AATCTCGAAGGGGTACTCGCTAATTTCCCGTTGTCGGATATGTACGACAT
GATTGCGCATCTTAAAGAAGTGGCCGAGACCAAACCTGAAGAACTTCGCC
TCCTCCTCATCTCGCACCCCCAAATCGCGGAAGCCATCGTCCACATGCAA
GTCAAGATCGGCATGATTAAGCCCCTGACTCGTGCCTCGGATCAGCAACC
TTACCAGCAACAACAGCATCAACAACAGCAGCAACAACAACCACTTCAAC
TGCAACCACCGGTACATCTAGGTGCCTTTGGCCATCAGCAGCAACAACAA
CAACAACAACAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCCGCACATTGGTGGGCTTGCGGCAGCTGGTGGATACTACCAAGCGC
AGCCCCCCTCTCATTTTACTCCTCAGCAAGCGGGAGGGTGGAGCGGACAG
ATGCCCCCCTTGCCACCGCCTGTGCCATTCGACCCTTCTGCAGCTGCGGG
TGCTGCTGGGGGTGGTGGAGGGGGTTTAGGCGCATTGGGAGCTCTGCTTG
CGGGCGGGAATCAGGCCATGGCGCAAGAAACGTTGCGGCAGGTGATGAGC
ATGACGCCGGAGCAATTGGCTGGAATGGAGCCAGGGCAGAGGCAGCTGAT
GATGGAATTGCAGCAGGCGGTATTGATGCAGACGCAGCAGGCTGGAGGGA
TGAGGTAG

Synonyms

Publications