jgi.p|Nanoce1779_2|598107, mRNA_7284 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598107
Unique NamemRNA_7284
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length787
Alignment locationscaffold_19:123958..124744 -

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Properties
Property NameValue
TranscriptId598193
TrackFilteredModels2
ProteinId598107
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:123958..124744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598107gene_7284Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598107mRNA_7284-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7284CDS_7284Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7284 ID=mRNA_7284|Name=jgi.p|Nanoce1779_2|598107|organism=Nannochloropsis oceanica|type=mRNA|length=787bp
ATTTATTGTTGTATTCACATTCTTCTTTGGGTATCAATTATAATAGCGAT
GTTAAGATAAGATATGAAACAAAGTCAGCGTGGCTGTCTATCGGTCTGTC
TGGCCGGTCTGTCGGTATACGTATGTGTGAATGTCTGTCTCTTTTGTCTC
TCTCTCTCTCTCTCTCTGCCTCTCTCTCTCTCTCTTTCAGTCTCTCTCCC
ATTCTGTCTGTCCTTCTATCTCTTTTCCTCGTTAATTAACACTACTCTTT
AATCTCTTCCCGTATAAATGTCTTCTTCTTCCTTGAATCTTTCTTCAGCC
TCTCCGTTACTCCTATTTCTTCTCCTACTTCTCTTCCTCGACAAAAATCG
ATTTACCACAGCTGGGGTGGGAGAAATTGATTGTCATCATATTGTGAGAG
GGTTACTCGGTATGACAGCGACGCTCTTACCCTTATTTTTCCATTGTGTT
TGTCTCGATGATGCTGGATCTCCTTTCGTTCTATGCTCTCCCTCTCTCTC
TCTGTCAGTCCAAGTGCAATAGCAACAGCAATATTTTTAATATTCTACTC
CAATTGACAAATCTCTCTATAGCAATTTCCTCTTTCTATTTGTTATGGAA
ATACACATCTTTTAATTTACTCACACACGACAAGGGCAGGTGCAAAATTC
ACACACGTGGGAACAAAAGATGGATGACAATAGTGTTGGTATATACAAAG
GCTATTCTCTTCCTACTCCTCCCCTTCCCTTTTCATGGAAATCCCACTCC
TTAATTTTCCCTCCCTTCCTCCCTTCCTCCCTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|598107

>mRNA_7284-protein ID=mRNA_7284-protein|Name=jgi.p|Nanoce1779_2|598107|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MMLDLLSFYALPLSLCQSKCNSNSNIFNILLQLTNLSIAISSFYLLWKYT
SFNLLTHDKGRCKIHTRGNKRWMTIVLVYTKAILFLLLPFPFHGNPTP*
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mRNA from alignment at scaffold_19:123958..124744-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7284 ID=mRNA_7284|Name=jgi.p|Nanoce1779_2|598107|organism=Nannochloropsis oceanica|type=mRNA|length=787bp|location=Sequence derived from alignment at scaffold_19:123958..124744- (Nannochloropsis oceanica)
ATTTATTGTTGTATTCACATTCTTCTTTGGGTATCAATTATAATAGCGAT
GTTAAGATAAGATATGAAACAAAGTCAGCGTGGCTGTCTATCGGTCTGTC
TGGCCGGTCTGTCGGTATACGTATGTGTGAATGTCTGTCTCTTTTGTCTC
TCTCTCTCTCTCTCTCTGCCTCTCTCTCTCTCTCTTTCAGTCTCTCTCCC
ATTCTGTCTGTCCTTCTATCTCTTTTCCTCGTTAATTAACACTACTCTTT
AATCTCTTCCCGTATAAATGTCTTCTTCTTCCTTGAATCTTTCTTCAGCC
TCTCCGTTACTCCTATTTCTTCTCCTACTTCTCTTCCTCGACAAAAATCG
ATTTACCACAGCTGGGGTGGGAGAAATTGATTGTCATCATATTGTGAGAG
GGTTACTCGGTATGACAGCGACGCTCTTACCCTTATTTTTCCATTGTGTT
TGTCTCGATGATGCTGGATCTCCTTTCGTTCTATGCTCTCCCTCTCTCTC
TCTGTCAGTCCAAGTGCAATAGCAACAGCAATATTTTTAATATTCTACTC
CAATTGACAAATCTCTCTATAGCAATTTCCTCTTTCTATTTGTTATGGAA
ATACACATCTTTTAATTTACTCACACACGACAAGGGCAGGTGCAAAATTC
ACACACGTGGGAACAAAAGATGGATGACAATAGTGTTGGTATATACAAAG
GCTATTCTCTTCCTACTCCTCCCCTTCCCTTTTCATGGAAATCCCACTCC
TTAATTTTCCCTCCCTTCCTCCCTTCCTCCCTCCCTC
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Coding sequence (CDS) from alignment at scaffold_19:123958..124744-

>mRNA_7284 ID=mRNA_7284|Name=jgi.p|Nanoce1779_2|598107|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_19:123958..124744- (Nannochloropsis oceanica)
ATGATGCTGGATCTCCTTTCGTTCTATGCTCTCCCTCTCTCTCTCTGTCA
GTCCAAGTGCAATAGCAACAGCAATATTTTTAATATTCTACTCCAATTGA
CAAATCTCTCTATAGCAATTTCCTCTTTCTATTTGTTATGGAAATACACA
TCTTTTAATTTACTCACACACGACAAGGGCAGGTGCAAAATTCACACACG
TGGGAACAAAAGATGGATGACAATAGTGTTGGTATATACAAAGGCTATTC
TCTTCCTACTCCTCCCCTTCCCTTTTCATGGAAATCCCACTCCTTAA
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Synonyms
Publications