jgi.p|Nanoce1779_2|598106, mRNA_7283 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598106
Unique NamemRNA_7283
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length872
Alignment locationscaffold_19:123023..123894 +

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Properties
Property NameValue
TranscriptId598192
TrackFilteredModels2
ProteinId598106
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:123023..123894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598106gene_7283Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598106mRNA_7283-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7283CDS_7283Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7283 ID=mRNA_7283|Name=jgi.p|Nanoce1779_2|598106|organism=Nannochloropsis oceanica|type=mRNA|length=872bp
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAAGTGGG
GGCCAGCCCCGCGGCTGACGATGGATGGGATATTGATGACTTTGGTATTT
CCTGGGAAGCTCCCGAGGAGGCCGTTGCTCCTACTGCTGATGCTGATGCT
GTTGCGGCTGTGCCCGTCCAGCGTGGGCAGCATGAACGCCAGGAGGAGGC
GGTGCCTGCACCTGAAATCTCATCGGGAAATGTGAGCGCGCCTCGAGGGA
AGAAGGTCAGTGCGATCGAGGCGGCTATCATGGCCGAGCATAAGATGGAG
GGGAATGTTTTGGCGCGAATCTCGGTGCGGACGCTGATCGTGAAGGAGTG
GAAAGAAACCTACTGGGTCATTCACCATGGCAAAATCCTACTCTACCGCT
CCAAGGAAGATTATCTCTACAACCCCATCGGGGTGATGGTGAAGAAAGAC
ATCCCACTGCGTTGTAATTTGCGGTGCTCTGAAGTGACCTGTAAGCCCTA
CAAGGGCTATGGCGACCTCTACCACTTCACTTTGGAGGAAATATTTGAAT
ATGGACCCTCTCTCGTGGCTAAATTTGCATCTGTTGACGTGAAAAGCATC
CGAGAGCTTCGCGCCGTCATTGTTGCCTACATCATCGCGGAGCGGAAGAA
GAGGGGTGGTGGCGGTCGCCGTAGCCCCGTTGGGGCCCAGGGACACAGTA
GTGTCTTTGCTAATCAAGAGCGCGGGCGGCCTCAGCTGCCTTCGCCCGTA
CAACAAAGGCAGGCCAGCCCAAAGCGAGGGGGAGGAAGCCCTAAGGTGGC
TAATGGGGCCTCGGCGGTGTCGGGCGCGGGCGGAGTGGATAAATATGCGA
AGTGGGGGCAGATTAGTTGAGG
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protein sequence of jgi.p|Nanoce1779_2|598106

>mRNA_7283-protein ID=mRNA_7283-protein|Name=jgi.p|Nanoce1779_2|598106|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MAEHKMEGNVLARISVRTLIVKEWKETYWVIHHGKILLYRSKEDYLYNPI
GVMVKKDIPLRCNLRCSEVTCKPYKGYGDLYHFTLEEIFEYGPSLVAKFA
SVDVKSIRELRAVIVAYIIAERKKRGGGGRRSPVGAQGHSSVFANQERGR
PQLPSPVQQRQASPKRGGGSPKVANGASAVSGAGGVDKYAKWGQIS*
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mRNA from alignment at scaffold_19:123023..123894+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7283 ID=mRNA_7283|Name=jgi.p|Nanoce1779_2|598106|organism=Nannochloropsis oceanica|type=mRNA|length=872bp|location=Sequence derived from alignment at scaffold_19:123023..123894+ (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAAGTGGG
GGCCAGCCCCGCGGCTGACGATGGATGGGATATTGATGACTTTGGTATTT
CCTGGGAAGCTCCCGAGGAGGCCGTTGCTCCTACTGCTGATGCTGATGCT
GTTGCGGCTGTGCCCGTCCAGCGTGGGCAGCATGAACGCCAGGAGGAGGC
GGTGCCTGCACCTGAAATCTCATCGGGAAATGTGAGCGCGCCTCGAGGGA
AGAAGGTCAGTGCGATCGAGGCGGCTATCATGGCCGAGCATAAGATGGAG
GGGAATGTTTTGGCGCGAATCTCGGTGCGGACGCTGATCGTGAAGGAGTG
GAAAGAAACCTACTGGGTCATTCACCATGGCAAAATCCTACTCTACCGCT
CCAAGGAAGATTATCTCTACAACCCCATCGGGGTGATGGTGAAGAAAGAC
ATCCCACTGCGTTGTAATTTGCGGTGCTCTGAAGTGACCTGTAAGCCCTA
CAAGGGCTATGGCGACCTCTACCACTTCACTTTGGAGGAAATATTTGAAT
ATGGACCCTCTCTCGTGGCTAAATTTGCATCTGTTGACGTGAAAAGCATC
CGAGAGCTTCGCGCCGTCATTGTTGCCTACATCATCGCGGAGCGGAAGAA
GAGGGGTGGTGGCGGTCGCCGTAGCCCCGTTGGGGCCCAGGGACACAGTA
GTGTCTTTGCTAATCAAGAGCGCGGGCGGCCTCAGCTGCCTTCGCCCGTA
CAACAAAGGCAGGCCAGCCCAAAGCGAGGGGGAGGAAGCCCTAAGGTGGC
TAATGGGGCCTCGGCGGTGTCGGGCGCGGGCGGAGTGGATAAATATGCGA
AGTGGGGGCAGATTAGTTGAGG
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Coding sequence (CDS) from alignment at scaffold_19:123023..123894+

>mRNA_7283 ID=mRNA_7283|Name=jgi.p|Nanoce1779_2|598106|organism=Nannochloropsis oceanica|type=CDS|length=591bp|location=Sequence derived from alignment at scaffold_19:123023..123894+ (Nannochloropsis oceanica)
ATGGCCGAGCATAAGATGGAGGGGAATGTTTTGGCGCGAATCTCGGTGCG
GACGCTGATCGTGAAGGAGTGGAAAGAAACCTACTGGGTCATTCACCATG
GCAAAATCCTACTCTACCGCTCCAAGGAAGATTATCTCTACAACCCCATC
GGGGTGATGGTGAAGAAAGACATCCCACTGCGTTGTAATTTGCGGTGCTC
TGAAGTGACCTGTAAGCCCTACAAGGGCTATGGCGACCTCTACCACTTCA
CTTTGGAGGAAATATTTGAATATGGACCCTCTCTCGTGGCTAAATTTGCA
TCTGTTGACGTGAAAAGCATCCGAGAGCTTCGCGCCGTCATTGTTGCCTA
CATCATCGCGGAGCGGAAGAAGAGGGGTGGTGGCGGTCGCCGTAGCCCCG
TTGGGGCCCAGGGACACAGTAGTGTCTTTGCTAATCAAGAGCGCGGGCGG
CCTCAGCTGCCTTCGCCCGTACAACAAAGGCAGGCCAGCCCAAAGCGAGG
GGGAGGAAGCCCTAAGGTGGCTAATGGGGCCTCGGCGGTGTCGGGCGCGG
GCGGAGTGGATAAATATGCGAAGTGGGGGCAGATTAGTTGA
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Synonyms
Publications