jgi.p|Nanoce1779_2|558401, mRNA_7282 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|558401
Unique NamemRNA_7282
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length939
Alignment locationscaffold_19:119771..121387 -

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Properties
Property NameValue
TranscriptId558487
TrackFilteredModels2
ProteinId558401
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:119771..121387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558401gene_7282Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558401mRNA_7282-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7282CDS_7282Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7282 ID=mRNA_7282|Name=jgi.p|Nanoce1779_2|558401|organism=Nannochloropsis oceanica|type=mRNA|length=939bp
CAGGACTTTATTTTTGTCCGCTGCACGGCCACGTCATCCCAGCACGGTCT
CCTTCAGCCCCCGTGACACGTTCCAACCCCCTGGTTGTTGTTGACTCGGG
AGCGAGCGTGACAAATCAGTTCAGAGGTTCCACACCACCACTCACACTGC
CGGCGCGACCACCACACCCCCGTTAGCATGTCGTCGTACGAGAATCTGTC
CCCCCAAGTCATTACGCGGGTAGCCCGAGAGATCCAAGACCTAGTCCGCA
AGCCCACGCCTGGCATTCGACTCATGCAAAACAACTGCGACAATATTGCG
GAGATTCACGCCGAGATTGATGGGCCTGAGGACACCCCTTACGTAGAGGG
CAGCTTCCACGTGAAGCTCGTCCTCAGCCAAGACTTCCCCAATTCTCCTC
CTCGCGGGTTTTTTCTCACTAAGATTTACCACCCGAACGTTAGCAGCACG
GGCGACATTTGCGTGAATACGTTGAAGAGAGACTGGACCCCCACTACCAC
CTTGGCCCATGTCCTGCAGGTGATACGCTGTCTCCTAATCGTACCCTTTC
CCGAGAGCTCTCTCAACGACGAAGCTGGCAAGCAGTTCATGACATCTTAC
GACGACTACGCCAAGCGTGCTCGGCTCCTTACCACGGTCCACGCCCTCCG
GAAGAGTAGCAACAGAAACAGCAGCACCAGCAGGAGTAGCAGCAAGAGCA
GTGTGGAGAAAGAGGGGAAGCTACCTGCAGGCACAGCGGAGAAGGAAGAG
GGGGAGGGGAAGGAAGGGAGGAACGGGGCGAAGGAGGGGGCGAGGGAGGG
GGCGAGGGAGGGGGGGGCGGGAGTGCTGGGGTCTCCCAACGTCGTGGGCC
TGACGAAGAGAAAAGTGCATCCTAACCAAAAGGAGACGGCCCTGTCAGTT
GACAAGCGATTGAAGAAGAAGGGATTAAAGCGACTCTAG
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protein sequence of jgi.p|Nanoce1779_2|558401

>mRNA_7282-protein ID=mRNA_7282-protein|Name=jgi.p|Nanoce1779_2|558401|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MSSYENLSPQVITRVAREIQDLVRKPTPGIRLMQNNCDNIAEIHAEIDGP
EDTPYVEGSFHVKLVLSQDFPNSPPRGFFLTKIYHPNVSSTGDICVNTLK
RDWTPTTTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMTSYDDYAKRARL
LTTVHALRKSSNRNSSTSRSSSKSSVEKEGKLPAGTAEKEEGEGKEGRNG
AKEGAREGAREGGAGVLGSPNVVGLTKRKVHPNQKETALSVDKRLKKKGL
KRL*
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mRNA from alignment at scaffold_19:119771..121387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7282 ID=mRNA_7282|Name=jgi.p|Nanoce1779_2|558401|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp|location=Sequence derived from alignment at scaffold_19:119771..121387- (Nannochloropsis oceanica)
CAGGACTTTATTTTTGTCCGCTGCACGGCCACGTCATCCCAGCACGGTCT
CCTTCAGCCCCCGTGACACGTTCCAACCCCCTGGTTGTTGTTGACTCGGG
AGCGAGCGTGACAAATCAGTTCAGAGGTTCCACACCACCACTCACACTGC
CGGCGCGACCACCACACCCCCGTTAGCATGTCGTCGTACGAGAATCTGTC
CCCCCAAGTCATTACGCGGGTAGCCCGAGAGATCCAAGACCTAGTCCGCA
AGCCCACGCCTGGTAAGTCCCGGTATACTTCCAGGTGGGGATATCATTAG
CCCTCAACCAAGGCGATAAGGAGGGAAGAGAAGAGACATGAAAGCAGGGT
CGGGGGACAGGTGAAGCAAAGACAAGGCGCAAATGGGGAGATCTGCATAT
TTCCTGTCGAGCAGTGTGGTTCGGCGGCTCGTGACATTCCACGTGAATCC
AGAAGGACTACGTCCCTCTCCCCCTCCCCCACTCTCTCCACAAACATCTT
ATGCTTCCCTCTCTGACGCACACAATAAATTTTAAACAGGCATTCGACTC
ATGCAAAACAACTGCGACAATATTGCGGAGATTCACGCCGAGATTGATGG
GCCTGGTACGTGCTGTTGTCGCTGTCCCTCCCTCCCTCTTTTCTCCCGTC
CTCCTCTGCTCTTTCGTTGTCCTTTCCTTTACCAAGGTTGAGCCCTCACA
TTATTCTTTATACGTCACATTGTGTGCGTTGCTTGAACCAATCCACCCGC
TGCTCCTCTTATCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCCCGGCCCC
TCCCAGAGGACACCCCTTACGTAGAGGGCAGCTTCCACGTGAAGCTCGTC
CTCAGCCAAGACTTCCCCAATTCTCCTCCTCGCGGGTTTTTTCTCACTAA
GATTTACCACCCGAACGTTAGCAGCACGGGCGACATTTGCGTGAATACGT
TGAAGAGAGACTGGACCCCCACTACCACCTTGGCCCATGTCCTGCAGGTA
AGCCGGCACGCCTTACACTCTCTCCCTCCCTTGCTCCCTCCCTCCCCTCC
TTTCTCCCTCTGTTTATGTATGCACTGAGAAGGATCTTAGAAAGTGGCAC
ACAAGCACTAGTCTGGCCCTTGCCTCAAGCGTGATGACATGAATTCGAAA
TGTTTAATGAACCCCTCCCTTCCTCCCTCCCTCTCTCCCTCCCAAAGGTG
ATACGCTGTCTCCTAATCGTACCCTTTCCCGAGAGCTCTCTCAACGACGA
AGCTGGCAAGCAGTTCATGACATCTTACGACGACTACGCCAAGCGTGCTC
GGCTCCTTACCACGGTCCACGCCCTCCGGAAGAGTAGCAACAGAAACAGC
AGCACCAGCAGGAGTAGCAGCAAGAGCAGTGTGGAGAAAGAGGGGAAGCT
ACCTGCAGGCACAGCGGAGAAGGAAGAGGGGGAGGGGAAGGAAGGGAGGA
ACGGGGCGAAGGAGGGGGCGAGGGAGGGGGCGAGGGAGGGGGGGGCGGGA
GTGCTGGGGTCTCCCAACGTCGTGGGCCTGACGAAGAGAAAAGTGCATCC
TAACCAAAAGGAGACGGCCCTGTCAGTTGACAAGCGATTGAAGAAGAAGG
GATTAAAGCGACTCTAG
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Coding sequence (CDS) from alignment at scaffold_19:119771..121387-

>mRNA_7282 ID=mRNA_7282|Name=jgi.p|Nanoce1779_2|558401|organism=Nannochloropsis oceanica|type=CDS|length=3048bp|location=Sequence derived from alignment at scaffold_19:119771..121387- (Nannochloropsis oceanica)
GTGATACGCTGTCTCCTAATCGTACCCTTTCCCGAGAGCTCTCTCAACGA
CGAAGCTGGCAAGCAGTTCATGACATCTTACGACGACTACGCCAAGCGTG
CTCGGCTCCTTACCACGGTCCACGCCCTCCGGAAGAGTAGCAACAGAAAC
AGCAGCACCAGCAGGAGTAGCAGCAAGAGCAGTGTGGAGAAAGAGGGGAA
GCTACCTGCAGGCACAGCGGAGAAGGAAGAGGGGGAGGGGAAGGAAGGGA
GGAACGGGGCGAAGGAGGGGGCGAGGGAGGGGGCGAGGGAGGGGGGGGCG
GGAGTGCTGGGGTCTCCCAACGTCGTGGGCCTGACGAAGAGAAAAGTGCA
TCCTAACCAAAAGGAGACGGCCCTGTCAGTTGACAAGCGATTGAAGAAGA
AGGGATTAAAGCGACTCTAGAGGACACCCCTTACGTAGAGGGCAGCTTCC
ACGTGAAGCTCGTCCTCAGCCAAGACTTCCCCAATTCTCCTCCTCGCGGG
TTTTTTCTCACTAAGATTTACCACCCGAACGTTAGCAGCACGGGCGACAT
TTGCGTGAATACGTTGAAGAGAGACTGGACCCCCACTACCACCTTGGCCC
ATGTCCTGCAGGCATTCGACTCATGCAAAACAACTGCGACAATATTGCGG
AGATTCACGCCGAGATTGATGGGCCTGATGTCGTCGTACGAGAATCTGTC
CCCCCAAGTCATTACGCGGGTAGCCCGAGAGATCCAAGACCTAGTCCGCA
AGCCCACGCCTGGTGATACGCTGTCTCCTAATCGTACCCTTTCCCGAGAG
CTCTCTCAACGACGAAGCTGGCAAGCAGTTCATGACATCTTACGACGACT
ACGCCAAGCGTGCTCGGCTCCTTACCACGGTCCACGCCCTCCGGAAGAGT
AGCAACAGAAACAGCAGCACCAGCAGGAGTAGCAGCAAGAGCAGTGTGGA
GAAAGAGGGGAAGCTACCTGCAGGCACAGCGGAGAAGGAAGAGGGGGAGG
GGAAGGAAGGGAGGAACGGGGCGAAGGAGGGGGCGAGGGAGGGGGCGAGG
GAGGGGGGGGCGGGAGTGCTGGGGTCTCCCAACGTCGTGGGCCTGACGAA
GAGAAAAGTGCATCCTAACCAAAAGGAGACGGCCCTGTCAGTTGACAAGC
GATTGAAGAAGAAGGGATTAAAGCGACTCTAGAGGACACCCCTTACGTAG
AGGGCAGCTTCCACGTGAAGCTCGTCCTCAGCCAAGACTTCCCCAATTCT
CCTCCTCGCGGGTTTTTTCTCACTAAGATTTACCACCCGAACGTTAGCAG
CACGGGCGACATTTGCGTGAATACGTTGAAGAGAGACTGGACCCCCACTA
CCACCTTGGCCCATGTCCTGCAGGCATTCGACTCATGCAAAACAACTGCG
ACAATATTGCGGAGATTCACGCCGAGATTGATGGGCCTGATGTCGTCGTA
CGAGAATCTGTCCCCCCAAGTCATTACGCGGGTAGCCCGAGAGATCCAAG
ACCTAGTCCGCAAGCCCACGCCTGGTGATACGCTGTCTCCTAATCGTACC
CTTTCCCGAGAGCTCTCTCAACGACGAAGCTGGCAAGCAGTTCATGACAT
CTTACGACGACTACGCCAAGCGTGCTCGGCTCCTTACCACGGTCCACGCC
CTCCGGAAGAGTAGCAACAGAAACAGCAGCACCAGCAGGAGTAGCAGCAA
GAGCAGTGTGGAGAAAGAGGGGAAGCTACCTGCAGGCACAGCGGAGAAGG
AAGAGGGGGAGGGGAAGGAAGGGAGGAACGGGGCGAAGGAGGGGGCGAGG
GAGGGGGCGAGGGAGGGGGGGGCGGGAGTGCTGGGGTCTCCCAACGTCGT
GGGCCTGACGAAGAGAAAAGTGCATCCTAACCAAAAGGAGACGGCCCTGT
CAGTTGACAAGCGATTGAAGAAGAAGGGATTAAAGCGACTCTAGAGGACA
CCCCTTACGTAGAGGGCAGCTTCCACGTGAAGCTCGTCCTCAGCCAAGAC
TTCCCCAATTCTCCTCCTCGCGGGTTTTTTCTCACTAAGATTTACCACCC
GAACGTTAGCAGCACGGGCGACATTTGCGTGAATACGTTGAAGAGAGACT
GGACCCCCACTACCACCTTGGCCCATGTCCTGCAGGCATTCGACTCATGC
AAAACAACTGCGACAATATTGCGGAGATTCACGCCGAGATTGATGGGCCT
GATGTCGTCGTACGAGAATCTGTCCCCCCAAGTCATTACGCGGGTAGCCC
GAGAGATCCAAGACCTAGTCCGCAAGCCCACGCCTGGTGATACGCTGTCT
CCTAATCGTACCCTTTCCCGAGAGCTCTCTCAACGACGAAGCTGGCAAGC
AGTTCATGACATCTTACGACGACTACGCCAAGCGTGCTCGGCTCCTTACC
ACGGTCCACGCCCTCCGGAAGAGTAGCAACAGAAACAGCAGCACCAGCAG
GAGTAGCAGCAAGAGCAGTGTGGAGAAAGAGGGGAAGCTACCTGCAGGCA
CAGCGGAGAAGGAAGAGGGGGAGGGGAAGGAAGGGAGGAACGGGGCGAAG
GAGGGGGCGAGGGAGGGGGCGAGGGAGGGGGGGGCGGGAGTGCTGGGGTC
TCCCAACGTCGTGGGCCTGACGAAGAGAAAAGTGCATCCTAACCAAAAGG
AGACGGCCCTGTCAGTTGACAAGCGATTGAAGAAGAAGGGATTAAAGCGA
CTCTAGAGGACACCCCTTACGTAGAGGGCAGCTTCCACGTGAAGCTCGTC
CTCAGCCAAGACTTCCCCAATTCTCCTCCTCGCGGGTTTTTTCTCACTAA
GATTTACCACCCGAACGTTAGCAGCACGGGCGACATTTGCGTGAATACGT
TGAAGAGAGACTGGACCCCCACTACCACCTTGGCCCATGTCCTGCAGGCA
TTCGACTCATGCAAAACAACTGCGACAATATTGCGGAGATTCACGCCGAG
ATTGATGGGCCTGATGTCGTCGTACGAGAATCTGTCCCCCCAAGTCATTA
CGCGGGTAGCCCGAGAGATCCAAGACCTAGTCCGCAAGCCCACGCCTG
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Synonyms
Publications